Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ATRNL1	26033	broad.mit.edu	36	10	117216732	117216732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207303	exon23	c.C3476T	p.T1159M	.	.	.
TUBB8	347688	broad.mit.edu	36	10	83397	83397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164154	exon4	c.C719T	p.T240M	.	.	.
BTG4	54766	broad.mit.edu	36	11	110871133	110871133	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017589	exon5	c.T627A	p.P209P	.	.	.
SPON1	10418	broad.mit.edu	36	11	14241049	14241049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006108	exon15	c.C2211T	p.A737A	.	.	.
SAAL1	113174	broad.mit.edu	36	11	18061763	18061763	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138421	exon10	c.A1134G	p.T378T	.	.	.
OR51B4	79339	broad.mit.edu	36	11	5279482	5279482	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033179	exon1	c.G271T	p.A91S	.	.	.
OR5D18	219438	broad.mit.edu	36	11	55344470	55344470	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001952	exon1	c.C789G	p.P263P	.	.	.
PPP6R3	55291	broad.mit.edu	36	11	68134030	68134030	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164164	exon22	c.G2293A	p.A765T	.	.	.
GNPTAB	79158	broad.mit.edu	36	12	100707941	100707941	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024312	exon3	c.G229A	p.V77I	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29516132	29516132	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183378	exon16	c.G1726A	p.A576T	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41144652	41144652	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144882	exon7	c.C1451T	p.A484V	.	.	.
GPR84	53831	broad.mit.edu	36	12	53043551	53043551	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020370	exon2	c.C352T	p.R118C	.	.	.
PLEKHG7	440107	broad.mit.edu	36	12	91674261	91674261	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004330	exon8	c.C663T	p.S221S	.	.	.
KLRB1	3820	broad.mit.edu	36	12	9641939	9641939	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002258	exon5	c.G500A	p.W167X	.	.	.
ATP12A	479	broad.mit.edu	36	13	24179181	24179181	+	Silent	SNP	C	T	T	rs2289908	byFrequency	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001185085	exon16	c.C2208T	p.T736T	.	.	.
FAM123A	219287	broad.mit.edu	36	13	24643584	24643584	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152704	exon1	c.G174A	p.P58P	.	.	.
SHISA2	387914	broad.mit.edu	36	13	25518912	25518912	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007538	exon2	c.G627A	p.P209P	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66103528	66103528	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020403	exon3	c.C3053T	p.T1018M	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77372708	77372708	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001122659	exon5	c.T1034C	p.L345P	.	.	.
HS6ST3	266722	broad.mit.edu	36	13	96282898	96282898	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153456	exon2	c.G861T	p.G287G	.	.	.
PCCA	5095	broad.mit.edu	36	13	99605322	99605322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001178004	exon5	c.C389T	p.A130V	.	.	.
TOX4	9878	broad.mit.edu	36	14	21030570	21030570	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014828	exon7	c.A955G	p.M319V	.	.	.
NARG2	79664	broad.mit.edu	36	15	58522034	58522034	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024611	exon12	c.A2298G	p.Q766Q	.	.	.
C15orf21	283651	broad.mit.edu	36	15	43635433	43635433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SCNN1G	6340	broad.mit.edu	36	16	23134032	23134032	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039	exon13	c.G1691A	p.R564H	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24273772	24273772	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006539	exon3	c.C413T	p.A138V	.	.	.
TIGD7	91151	broad.mit.edu	36	16	3290350	3290350	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033208	exon2	c.A266C	p.Q89P	.	.	.
SALL1	6299	broad.mit.edu	36	16	49732992	49732992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002968	exon2	c.G642A	p.A214A	.	.	.
CHD9	80205	broad.mit.edu	36	16	51915719	51915719	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025134	exon39	c.G8057A	p.G2686E	.	.	.
KRT26	353288	broad.mit.edu	36	17	36180148	36180148	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181539	exon3	c.C564T	p.A188A	.	.	.
ACLY	47	broad.mit.edu	36	17	37317242	37317242	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198830	exon7	c.C726T	p.F242F	.	.	.
CYB5D1	124637	broad.mit.edu	36	17	7702826	7702826	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144607	exon3	c.C415T	p.R139C	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42815430	42815430	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016427	exon1	c.C204T	p.D68D	.	.	.
ST8SIA3	51046	broad.mit.edu	36	18	53178255	53178255	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015879	exon4	c.C892T	p.R298W	.	.	.
FBXO15	201456	broad.mit.edu	36	18	69891878	69891878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152676	exon10	c.C1103T	p.P368L	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8059983	8059983	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002845	exon8	c.G1432T	p.D478Y	.	.	.
CYP4F11	57834	broad.mit.edu	36	19	15899110	15899110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128932	exon5	c.G437A	p.R146H	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21782270	21782270	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003423	exon4	c.A2409C	p.Q803H	.	.	.
SLC7A9	11136	broad.mit.edu	36	19	38046848	38046848	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126335	exon4	c.G472A	p.A158T	.	.	.
TULP2	7288	broad.mit.edu	36	19	54078891	54078891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003323	exon11	c.C1207T	p.R403W	.	.	.
MUC16	94025	broad.mit.edu	36	19	8910723	8910723	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon5	c.C31908A	p.V10636V	.	.	.
STXBP3	6814	broad.mit.edu	36	1	109100902	109100902	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007269	exon4	c.G249A	p.P83P	.	.	.
NRAS	4893	broad.mit.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon3	c.C181A	p.Q61K	 NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
SYCP1	6847	broad.mit.edu	36	1	115291412	115291412	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003176	exon27	c.A2270T	p.K757I	.	.	.
MRPS21	54460	broad.mit.edu	36	1	148547264	148547264	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018997	exon2	c.C242T	p.A81V	.	.	.
C1orf226	400793	broad.mit.edu	36	1	160618435	160618435	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085375	exon1	c.G120T	p.G40G	.	.	.
CTSE	1510	broad.mit.edu	36	1	204486828	204486828	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001910	exon4	c.G348T	p.T116T	.	.	.
OR11L1	391189	broad.mit.edu	36	1	246071284	246071284	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001959	exon1	c.G538A	p.D180N	.	.	.
C1orf38	9473	broad.mit.edu	36	1	28081447	28081447	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105556	exon4	c.A1025C	p.Q342P	.	.	.
GJB3	2707	broad.mit.edu	36	1	35023591	35023592	+	Missense_Mutation	DNP	TC	AA	AA	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024009	exon2	c.641_642AA	.	.	.	.
TRIM33	51592	broad.mit.edu	36	1	114777798	114777800	+	In_Frame_Del	DEL	TTC	-	-	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	TTC	TTC	TTC	-	TTC	TTC	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015906	exon5	c.1002_1004del	p.334_335del	.	.	.
DEFB119	245932	broad.mit.edu	36	20	29440614	29440614	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153323	exon2	c.C142T	p.R48W	.	.	.
SLC17A9	63910	broad.mit.edu	36	20	61067496	61067496	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022082	exon10	c.C1035T	p.S345S	.	.	.
CBS	875	broad.mit.edu	36	21	43349243	43349244	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
USP18	11274	broad.mit.edu	36	22	17020570	17020570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017414	exon2	c.C140T	p.A47V	.	.	.
BPIL2	254240	broad.mit.edu	36	22	31159708	31159708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174932	exon9	c.C976T	p.R326W	.	.	.
FMNL2	114793	broad.mit.edu	36	2	153181894	153181894	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052905	exon13	c.A1256C	p.K419T	.	.	.
TTN	7273	broad.mit.edu	36	2	179144071	179144071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon154	c.C47838T	p.D15946D	.	.	.
PTPRN	5798	broad.mit.edu	36	2	219869445	219869445	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199764	exon17	c.C2078T	p.T693M	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155752	226155752	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020864	exon4	c.G1375A	p.A459T	.	.	.
DNER	92737	broad.mit.edu	36	2	230164728	230164728	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139072	exon2	c.G397T	p.E133X	.	.	.
PNPT1	87178	broad.mit.edu	36	2	55747706	55747706	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033109	exon13	c.T1100A	p.L367H	.	.	.
PCBP1	5093	broad.mit.edu	36	2	70168684	70168684	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006196	exon1	c.T305A	p.L102Q	.	.	.
PLS1	5357	broad.mit.edu	36	3	143885689	143885689	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002670	exon7	c.T731A	p.I244N	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14774051	14774051	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184958	exon13	c.C1744G	p.P582A	.	.	.
SMC4	10051	broad.mit.edu	36	3	161621323	161621323	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002800	exon13	c.A1959T	p.E653D	.	.	.
HTR3D	200909	broad.mit.edu	36	3	185239263	185239263	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163646	exon8	c.C1171G	p.P391A	.	.	.
CACNA2D2	9254	broad.mit.edu	36	3	50392411	50392411	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006030	exon9	c.C885T	p.I295I	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123339978	123339978	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015312	exon12	c.A1303C	p.I435L	.	.	.
FAT4	79633	broad.mit.edu	36	4	126556032	126556032	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon5	c.C6464T	p.A2155V	.	.	.
STOX2	56977	broad.mit.edu	36	4	185175353	185175353	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020225	exon4	c.C2703T	p.S901S	.	.	.
CDH12	1010	broad.mit.edu	36	5	22114362	22114363	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004061	exon5	c.181_182insC	p.F61fs	.	.	.
APC	324	broad.mit.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	T	T	rs62619935	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127510	exon8	c.C646T	p.R216X	.	.	.
PCDHB16	57717	broad.mit.edu	36	5	140544284	140544284	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020957	exon1	c.G1966A	p.A656T	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140575484	140575484	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018933	exon1	c.C1605G	p.D535E	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140778599	140778599	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032101	exon1	c.G989A	p.R330Q	.	.	.
ITK	3702	broad.mit.edu	36	5	156582452	156582452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005546	exon6	c.G497A	p.R166Q	.	.	.
FGF18	8817	broad.mit.edu	36	5	170795860	170795860	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003862	exon3	c.C228T	p.R76R	.	.	.
GZMK	3003	broad.mit.edu	36	5	54356323	54356323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002104	exon2	c.G143A	p.G48E	.	.	.
C6orf204	387119	broad.mit.edu	36	6	118909727	118909727	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178035	exon9	c.A1662T	p.K554N	.	.	.
VNN1	8876	broad.mit.edu	36	6	133055891	133055891	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004666	exon4	c.C791A	p.A264E	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152564707	152564707	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015293	exon42	c.C6662T	p.S2221L	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34932017	34932017	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017754	exon10	c.C1144T	p.R382C	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75944184	75944184	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004370	exon12	c.A2352G	p.P784P	.	.	.
LRCH4	4034	broad.mit.edu	36	7	100013955	100013956	+	Splice_Site	INS	-	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MUC17	140453	broad.mit.edu	36	7	100463729	100463729	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040105	exon3	c.C2312G	p.P771R	.	.	.
DUS4L	11062	broad.mit.edu	36	7	107002967	107002967	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181581	exon6	c.G455C	p.G152A	.	.	.
SLC26A4	5172	broad.mit.edu	36	7	107101900	107101900	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000441	exon5	c.C471T	p.P157P	.	.	.
GPR37	2861	broad.mit.edu	36	7	124191608	124191608	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005302	exon1	c.C659G	p.A220G	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131503713	131503713	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020911	exon22	c.C4176T	p.T1392T	.	.	.
TAS2R3	50831	broad.mit.edu	36	7	141110578	141110578	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016943	exon1	c.C151T	p.L51L	.	.	.
NEUROD6	63974	broad.mit.edu	36	7	31344457	31344457	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022728	exon2	c.C951G	p.D317E	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70438550	70438550	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022479	exon2	c.C317G	p.A106G	.	.	.
PEX1	5189	broad.mit.edu	36	7	91985460	91985460	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000466	exon4	c.C403T	p.R135X	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92599901	92599901	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152703	exon5	c.G3320A	p.R1107H	.	.	.
ZNF3	7551	broad.mit.edu	36	7	99511113	99511113	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017715	exon4	c.G132C	p.K44N	.	.	.
ABCF2	10061	broad.mit.edu	36	7	150552877	150552877	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005692	exon3	c.285delT	p.F95fs	.	.	.
FAM49B	51571	broad.mit.edu	36	8	130952822	130952822	+	De_novo_Start_OutOfFrame	SNP	G	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016623	exon7	c.C176A	p.A59D	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23235735	23235735	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002318	exon7	c.C1155T	p.I385I	.	.	.
HOOK3	84376	broad.mit.edu	36	8	42880516	42880516	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032410	exon2	c.A101C	p.D34A	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77926695	77926695	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024721	exon10	c.A4983C	p.K1661N	.	.	.
TSPYL5	85453	broad.mit.edu	36	8	98358864	98358864	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033512	exon1	c.G385A	p.V129M	.	.	.
DBH	1621	broad.mit.edu	36	9	135498387	135498387	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000787	exon4	c.C776A	p.A259D	.	.	.
CREB3	10488	broad.mit.edu	36	9	35722997	35722997	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006368	exon2	c.C134G	p.P45R	.	.	.
IL1RAPL2	26280	broad.mit.edu	36	X	104871298	104871298	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017416	exon8	c.C1006T	p.R336X	.	.	.
CNGA2	1260	broad.mit.edu	36	X	150658775	150658775	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3894-01A-01W-1073-09	TCGA-AG-3894-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005140	exon4	c.C289T	p.R97C	.	.	.