Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SEPHS1	22929	hgsc.bcm.edu	36	10	13401215	13401215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001195604	exon8	c.G899A	p.R300Q	.	.	.
MPP7	143098	hgsc.bcm.edu	36	10	28567522	28567522	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_173496	exon4	c.G18A	p.T6T	.	.	.
LRRC18	474354	hgsc.bcm.edu	36	10	49791835	49791835	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001006939	exon1	c.C372T	p.R124R	.	.	.
MYST4	23522	hgsc.bcm.edu	36	10	76451914	76451914	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_012330	exon16	c.A3291G	p.E1097E	 MYST4,central_nervous_system,brain,Substitution - coding silent,0 	.	.
RIC8B	55188	hgsc.bcm.edu	36	12	105761817	105761817	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_018157	exon6	c.C1123T	p.R375X	.	.	.
UBE3B	89910	hgsc.bcm.edu	36	12	108425270	108425270	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_130466	exon14	c.G1342A	p.G448R	.	.	.
LALBA	3906	hgsc.bcm.edu	36	12	47249950	47249950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_002289	exon1	c.G121A	p.A41T	.	.	.
GEFT	115557	hgsc.bcm.edu	36	12	56294118	56294118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001111270	exon7	c.G722A	p.R241H	.	.	.
FAM123A	219287	hgsc.bcm.edu	36	13	24642387	24642387	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_152704	exon1	c.G1371A	p.A457A	 FAM123A,large_intestine,colon,Substitution - Missense,-2 	.	.
FRMD6	122786	hgsc.bcm.edu	36	14	51244671	51244671	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_152330	exon7	c.C660T	p.D220D	.	.	.
SAMD4A	23034	hgsc.bcm.edu	36	14	54285325	54285325	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_015589	exon4	c.C1019T	p.A340V	.	.	.
FNTB	2342	hgsc.bcm.edu	36	14	64589794	64589794	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_002028	exon10	c.G1041A	p.A347A	.	.	.
ENTPD5	957	hgsc.bcm.edu	36	14	73509451	73509451	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001249	exon13	c.G916T	p.E306X	.	.	.
ATP10A	57194	hgsc.bcm.edu	36	15	23517991	23517991	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_024490	exon7	c.C1269A	p.Y423X	.	.	.
CYP11A1	1583	hgsc.bcm.edu	36	15	72418047	72418047	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_000781	exon8	c.G1352A	p.R451Q	.	.	.
E2F4	1874	hgsc.bcm.edu	36	16	65786143	65786143	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001950	exon6	c.C567T	p.P189P	.	.	.
SLFN13	146857	hgsc.bcm.edu	36	17	30793147	30793147	+	Silent	SNP	G	G	A	rs62078110	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_144682	exon5	c.C1470T	p.T490T	.	.	.
SLC4A1	6521	hgsc.bcm.edu	36	17	39692768	39692768	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_000342	exon7	c.G544C	p.G182R	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001126114	exon7	c.C742T	p.R248W	 TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 	.	.
FAM38B	63895	hgsc.bcm.edu	36	18	10679666	10679666	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_022068	exon45	c.G7145T	p.R2382L	.	.	.
SMAD2	4087	hgsc.bcm.edu	36	18	43628930	43628930	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001135937	exon7	c.A821G	p.D274G	.	.	.
JAK3	3718	hgsc.bcm.edu	36	19	17811354	17811354	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_000215	exon10	c.G1373T	p.W458L	.	.	.
TULP2	7288	hgsc.bcm.edu	36	19	54077251	54077251	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_003323	exon12	c.C1297T	p.R433C	.	.	.
SIGLEC10	89790	hgsc.bcm.edu	36	19	56606253	56606253	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001171157	exon10	c.C1721T	p.T574M	.	.	.
SLC6A17	388662	hgsc.bcm.edu	36	1	110519079	110519079	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001010898	exon5	c.G727A	p.V243I	.	.	.
EDEM3	80267	hgsc.bcm.edu	36	1	182970336	182970336	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_025191	exon5	c.A410G	p.D137G	.	.	.
CFHR5	81494	hgsc.bcm.edu	36	1	195231595	195231595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_030787	exon5	c.G733A	p.G245R	.	.	.
PLXNA2	5362	hgsc.bcm.edu	36	1	206273304	206273304	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_025179	exon28	c.C5038T	p.R1680W	.	.	.
PRKCZ	5590	hgsc.bcm.edu	36	1	2072178	2072178	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_002744	exon9	c.G777T	p.G259G	.	.	.
CAMK1G	57172	hgsc.bcm.edu	36	1	207852145	207852145	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_020439	exon11	c.G1301A	p.C434Y	.	.	.
INTS7	25896	hgsc.bcm.edu	36	1	210247249	210247249	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001199809	exon5	c.T575C	p.L192P	.	.	.
EPRS	2058	hgsc.bcm.edu	36	1	218260034	218260034	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_004446	exon10	c.A1268G	p.Y423C	.	.	.
NLRP3	114548	hgsc.bcm.edu	36	1	245678408	245678408	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_004895	exon9	c.C3090A	p.V1030V	.	.	.
OR2B11	127623	hgsc.bcm.edu	36	1	245681385	245681385	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001004492	exon1	c.C523A	p.R175R	.	.	.
ZMYM6	9204	hgsc.bcm.edu	36	1	35243428	35243428	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_007167	exon13	c.G1846C	p.E616Q	.	.	.
ZNF691	51058	hgsc.bcm.edu	36	1	43089671	43089671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_015911	exon2	c.G455A	p.R152H	.	.	.
TOX2	84969	hgsc.bcm.edu	36	20	42116380	42116380	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_032883	exon6	c.G553A	p.D185N	.	.	.
CDH26	60437	hgsc.bcm.edu	36	20	58008101	58008101	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_021810	exon2	c.G84A	p.T28T	.	.	.
TCN2	6948	hgsc.bcm.edu	36	22	29337025	29337025	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001184726	exon2	c.C232A	p.L78I	.	.	.
EFCAB6	64800	hgsc.bcm.edu	36	22	42405370	42405370	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_198856	exon11	c.G802A	p.D268N	.	.	.
TPO	7173	hgsc.bcm.edu	36	2	1436502	1436502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_175721	exon5	c.C512T	p.T171M	.	.	.
SMARCAL1	50485	hgsc.bcm.edu	36	2	216996603	216996603	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_014140	exon6	c.G1099A	p.V367I	.	.	.
C2orf62	375307	hgsc.bcm.edu	36	2	218933561	218933561	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_198559	exon5	c.C397T	p.R133W	.	.	.
TRAF3IP1	26146	hgsc.bcm.edu	36	2	238902700	238902700	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001139490	exon5	c.A893G	p.E298G	.	.	.
TSGA10	80705	hgsc.bcm.edu	36	2	99092293	99092293	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_025244	exon6	c.A42G	p.P14P	.	.	.
TCTEX1D2	255758	hgsc.bcm.edu	36	3	197507332	197507332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_152773	exon4	c.C323T	p.A108V	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_018315	exon8	c.G1154A	p.R385H	 FBXW7,large_intestine,NS,Substitution - Missense,0 	.	.
KCNN2	3781	hgsc.bcm.edu	36	5	113859688	113859688	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_021614	exon8	c.C1650T	p.H550H	.	.	.
CTNNA1	1495	hgsc.bcm.edu	36	5	138251082	138251082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001903	exon9	c.G1148A	p.R383H	.	.	.
PCDHA10	56139	hgsc.bcm.edu	36	5	140216475	140216475	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_031860	exon1	c.G658C	p.E220Q	.	.	.
RAB24	53917	hgsc.bcm.edu	36	5	176662197	176662197	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_130781	exon5	c.G320A	p.R107H	.	.	.
ROS1	6098	hgsc.bcm.edu	36	6	117837490	117837490	+	Silent	SNP	C	C	T	rs55736087	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_002944	exon4	c.G237A	p.S79S	.	.	.
MLN	4295	hgsc.bcm.edu	36	6	33876841	33876841	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_002418	exon2	c.C78T	p.F26F	.	.	.
VNN3	55350	hgsc.bcm.edu	36	6	133091634	133091634	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	.	.	.	.	.	.	.
KCND2	3751	hgsc.bcm.edu	36	7	120168860	120168860	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_012281	exon3	c.G1315A	p.G439R	.	.	.
SULF1	23213	hgsc.bcm.edu	36	8	70698952	70698952	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_001128205	exon15	c.G1816A	p.V606M	.	.	.
PNPLA7	375775	hgsc.bcm.edu	36	9	139557022	139557022	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_152286	exon6	c.G484A	p.V162I	.	.	.
IL1RAPL2	26280	hgsc.bcm.edu	36	X	104871307	104871307	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_017416	exon8	c.C1015T	p.R339W	.	.	.
GPR112	139378	hgsc.bcm.edu	36	X	135254576	135254576	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_153834	exon6	c.G1045T	p.E349X	.	.	.
DACH2	117154	hgsc.bcm.edu	36	X	85956362	85956362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	d1daf7a6-2fce-4178-89b7-248146957a60	e62c9f56-d0da-4cad-a8f5-60dbbe8a0b83	NM_053281	exon10	c.G1553A	p.R518H	.	.	.