Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target SGMS1 259230 hgsc.bcm.edu 36 10 51773409 51773409 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_147156 exon7 c.G472A p.E158K . . . ITIH5 80760 hgsc.bcm.edu 36 10 7667989 7667989 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_030569 exon8 c.G989A p.R330H . . . TRPC6 7225 hgsc.bcm.edu 36 11 100859061 100859061 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_004621 exon5 c.G1339A p.A447T . . . KIF18A 81930 hgsc.bcm.edu 36 11 28014507 28014507 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_031217 exon14 c.T2229G p.N743K . . . WNT11 7481 hgsc.bcm.edu 36 11 75575778 75575778 + Silent SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_004626 exon5 c.G1044A p.V348V . . . SFRS8 6433 hgsc.bcm.edu 36 12 130764620 130764620 + Silent SNP T T C novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_004592 exon2 c.T270C p.Y90Y . . . KRAS 3845 hgsc.bcm.edu 36 12 25289551 25289551 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_004985 exon2 c.G35T p.G12V KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . IRAK4 51135 hgsc.bcm.edu 36 12 42462531 42462531 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_016123 exon9 c.C1096A p.P366T . . . TMEM117 84216 hgsc.bcm.edu 36 12 43068650 43068650 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_032256 exon8 c.G1473T p.Q491H . . . DDIT3 1649 hgsc.bcm.edu 36 12 56197024 56197024 + Silent SNP A A G novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_001195055 exon4 c.T414C p.A138A DDIT3,large_intestine,colon,Substitution - Missense,-1 . . CHD4 1108 hgsc.bcm.edu 36 12 6574832 6574832 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_001273 exon14 c.C2050T p.R684X . . . WNK1 65125 hgsc.bcm.edu 36 12 840559 840559 + Silent SNP A A G novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_001184985 exon7 c.A1740G p.E580E . . . IMP3 55272 hgsc.bcm.edu 36 15 73719044 73719044 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_018285 exon1 c.A521G p.N174S . . . ZNF423 23090 hgsc.bcm.edu 36 16 48227754 48227754 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_015069 exon5 c.G2810A p.R937Q . . . PRPF8 10594 hgsc.bcm.edu 36 17 1526005 1526005 + Silent SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_006445 exon18 c.G2646A p.K882K . . . TRIM37 4591 hgsc.bcm.edu 36 17 54464126 54464126 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_001005207 exon18 c.C1861T p.H621Y . . . TP53 7157 hgsc.bcm.edu 36 17 7518937 7518937 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_001126114 exon6 c.C637T p.R213X TP53,central_nervous_system,brain,Substitution - Missense,+1 . . C17orf28 283987 hgsc.bcm.edu 36 17 70462025 70462025 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_030630 exon14 c.G1667A p.R556H . . . PIK3C2B 5287 hgsc.bcm.edu 36 1 202685655 202685655 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_002646 exon14 c.G2180A p.R727Q . . . DDOST 1650 hgsc.bcm.edu 36 1 20851537 20851537 + Silent SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_005216 exon11 c.C1293T p.S431S . . . PIK3CD 5293 hgsc.bcm.edu 36 1 9699720 9699720 + Silent SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_005026 exon7 c.G897A p.P299P . . . KRTAP15-1 254950 hgsc.bcm.edu 36 21 30734645 30734645 + Silent SNP G G T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_181623 exon1 c.G129T p.L43L . . . SEZ6L 23544 hgsc.bcm.edu 36 22 25018743 25018743 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_001184776 exon2 c.C466A p.L156I . . . HOXD4 3233 hgsc.bcm.edu 36 2 176725906 176725906 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_014621 exon2 c.C758T p.T253M . . . COL6A3 1293 hgsc.bcm.edu 36 2 237918324 237918324 + Silent SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_057166 exon32 c.C5352T p.Y1784Y . . . GLI2 2736 hgsc.bcm.edu 36 2 121442781 121442781 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_005270 exon5 c.G665A p.R222Q . . . TRA2B 6434 hgsc.bcm.edu 36 3 187118204 187118204 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_004593 exon9 c.G860A p.R287H . . . TMPPE 643853 hgsc.bcm.edu 36 3 33110623 33110623 + Silent SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_001039770 exon2 c.C69T p.S23S . . . TLL1 7092 hgsc.bcm.edu 36 4 167215481 167215481 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_012464 exon17 c.C2190A p.D730E . . . EVC2 132884 hgsc.bcm.edu 36 4 5675369 5675369 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_001166136 exon14 c.G2057A p.R686H . . . FBXW7 55294 hgsc.bcm.edu 36 4 153470306 153470308 + In_Frame_Del DEL TGT TGT - novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 TGT TGT TGT - TGT TGT Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_018315 exon7 c.962_964del p.321_322del . . . YTHDC2 64848 hgsc.bcm.edu 36 5 112955741 112955742 + Frame_Shift_Ins INS - - T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 - - - T - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_022828 exon28 c.4179_4180insT p.D1393fs . . . MYOT 9499 hgsc.bcm.edu 36 5 137241109 137241109 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_006790 exon4 c.G533A p.R178H . . . APC 324 hgsc.bcm.edu 36 5 112202900 112202901 + Frame_Shift_Del DEL AG AG - novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_001127511 exon14 c.3656_3657del p.1219_1219del . . . MAK 4117 hgsc.bcm.edu 36 6 10899964 10899964 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_005906 exon9 c.G1246A p.G416R . . . SLC2A12 154091 hgsc.bcm.edu 36 6 134392191 134392191 + Silent SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_145176 exon2 c.C465T p.I155I . . . SYNE1 23345 hgsc.bcm.edu 36 6 152527122 152527122 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_015293 exon46 c.G7231A p.V2411M . . . NRM 11270 hgsc.bcm.edu 36 6 30765067 30765067 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_007243 exon3 c.G472A p.V158I . . . OGFRL1 79627 hgsc.bcm.edu 36 6 72062949 72062949 + Silent SNP C C T novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_024576 exon5 c.C510T p.N170N . . . PKD1L1 168507 hgsc.bcm.edu 36 7 47827293 47827293 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_138295 exon46 c.A6871G p.I2291V . . . DLX5 1749 hgsc.bcm.edu 36 7 96491548 96491548 + Silent SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_005221 exon1 c.C324T p.Y108Y . . . TNC 3371 hgsc.bcm.edu 36 9 116889303 116889303 + Silent SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_002160 exon3 c.C528T p.C176C . . . KLHL4 56062 hgsc.bcm.edu 36 X 86774021 86774021 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3594-01A-02W-0831-10 TCGA-AG-3594-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID a2974b0a-076a-4610-bd2f-7d2b7d018e1f 1e0918f2-8b94-404d-91db-dcd6b9bc0217 NM_057162 exon7 c.G1480A p.E494K . . .