Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target SFXN2 118980 hgsc.bcm.edu 36 10 104476799 104476799 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_178858 exon3 c.C227T p.S76L . . . KCNJ5 3762 hgsc.bcm.edu 36 11 128286500 128286500 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_000890 exon2 c.G122A p.R41H . . . CNGA4 1262 hgsc.bcm.edu 36 11 6218141 6218141 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001037329 exon4 c.C541A p.H181N . . . ANO4 121601 hgsc.bcm.edu 36 12 100017518 100017518 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_178826 exon21 c.G1933C p.V645L . . . DUSP16 80824 hgsc.bcm.edu 36 12 12521585 12521585 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_030640 exon7 c.C1447T p.R483X . . . KCNA1 3736 hgsc.bcm.edu 36 12 4892133 4892133 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_000217 exon2 c.G1328A p.R443H . . . DDIT3 1649 hgsc.bcm.edu 36 12 56197027 56197027 + Silent SNP C T T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001195055 exon4 c.G411A p.R137R . . . SCFD1 23256 hgsc.bcm.edu 36 14 30189589 30189589 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_182835 exon8 c.T536G p.L179R . . . AHSA1 10598 hgsc.bcm.edu 36 14 76995714 76995714 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_012111 exon2 c.C83T p.T28M . . . CXXC1 30827 hgsc.bcm.edu 36 18 46064353 46064353 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001101654 exon10 c.G1334A p.R445H . . . CNN1 1264 hgsc.bcm.edu 36 19 11521520 11521520 + Silent SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001299 exon7 c.C804T p.Y268Y . . . LSM14A 26065 hgsc.bcm.edu 36 19 39379385 39379385 + Silent SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001114093 exon3 c.C292T p.L98L . . . ZNF567 163081 hgsc.bcm.edu 36 19 41903157 41903157 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_152603 exon4 c.C1598T p.P533L . . . PTGS2 5743 hgsc.bcm.edu 36 1 184913435 184913435 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_000963 exon5 c.G608T p.G203V . . . KIAA0562 9731 hgsc.bcm.edu 36 1 3740317 3740317 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_014704 exon12 c.G1628A p.R543H . . . LEPR 3953 hgsc.bcm.edu 36 1 65875144 65875144 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_002303 exon20 c.G3356T p.S1119I . . . ZNF326 284695 hgsc.bcm.edu 36 1 90258972 90258972 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_182976 exon10 c.A1208G p.E403G . . . ZEB2 9839 hgsc.bcm.edu 36 2 144874242 144874242 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001171653 exon7 c.C910T p.H304Y . . . PRKAG3 53632 hgsc.bcm.edu 36 2 219403778 219403778 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_017431 exon3 c.C164A p.A55D . . . MUC13 56667 hgsc.bcm.edu 36 3 126115102 126115102 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_033049 exon7 c.G1078A p.V360I . . . LPP 4026 hgsc.bcm.edu 36 3 189810000 189810000 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001167671 exon6 c.C787T p.P263S . . . CLDN16 10686 hgsc.bcm.edu 36 3 191588747 191588747 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_006580 exon1 c.C145T p.R49C . . . LRCH3 84859 hgsc.bcm.edu 36 3 199040858 199040858 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_032773 exon6 c.A804G p.I268M . . . MAPK10 5602 hgsc.bcm.edu 36 4 87247478 87247478 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_138982 exon5 c.C288A p.S96R . . . SLC45A2 51151 hgsc.bcm.edu 36 5 33987485 33987486 + In_Frame_Ins INS - - GAT novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 - - - GAT - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_016180 exon5 c.1087_1088insATC p.Y363delinsIY . . . APC 324 hgsc.bcm.edu 36 5 112203538 112203538 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001127511 exon14 c.C4294T p.R1432X APC,large_intestine,rectum,Substitution - Nonsense,0 . . MEGF10 84466 hgsc.bcm.edu 36 5 126762351 126762351 + Silent SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_032446 exon8 c.C744T p.H248H . . . DNAH5 1767 hgsc.bcm.edu 36 5 13975244 13975244 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001369 exon5 c.C632T p.S211L . . . ENPP3 5169 hgsc.bcm.edu 36 6 132048273 132048273 + Silent SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_005021 exon13 c.C1197T p.Y399Y . . . SAMD9L 219285 hgsc.bcm.edu 36 7 92600525 92600525 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_152703 exon5 c.C2696T p.T899I . . . UBR5 51366 hgsc.bcm.edu 36 8 103386551 103386551 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_015902 exon21 c.T2765G p.I922S . . . SLC45A4 57210 hgsc.bcm.edu 36 8 142298161 142298161 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001080431 exon4 c.G607A p.D203N . . . FAM123B 139285 hgsc.bcm.edu 36 X 63327971 63327971 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_152424 exon2 c.C1921T p.R641X . . . TBL1X 6907 hgsc.bcm.edu 36 X 9621421 9621421 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3584-01A-01W-0831-10 TCGA-AG-3584-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 9b11bde3-b798-4ff6-8b7f-61b8bb40fd31 338311a8-6c7c-4c60-b6bb-8aad73f76db3 NM_001139468 exon11 c.C862T p.R288X . . .