Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target LUZP2 338645 hgsc.bcm.edu 36 11 24954737 24954737 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_001009909 exon8 c.C547A p.Q183K . . . DAO 1610 hgsc.bcm.edu 36 12 107812255 107812255 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_001917 exon7 c.C595T p.R199W . . . SOX5 6660 hgsc.bcm.edu 36 12 23890194 23890194 + Silent SNP G G A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_152989 exon6 c.C432T p.N144N . . . LRRK2 120892 hgsc.bcm.edu 36 12 38989214 38989214 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_198578 exon30 c.C4229T p.T1410M . . . EEA1 8411 hgsc.bcm.edu 36 12 91726998 91726998 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_003566 exon18 c.G2265C p.Q755H . . . PCDH20 64881 hgsc.bcm.edu 36 13 60884224 60884224 + Missense_Mutation SNP C C A rs61749965 unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_022843 exon2 c.G2009T p.R670L . . . TRPC4 7223 hgsc.bcm.edu 36 13 37109755 37109755 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_001135956 exon10 c.A2024G p.K675R . . . LGMN 5641 hgsc.bcm.edu 36 14 92242582 92242582 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_001008530 exon13 c.C1190T p.T397M . . . G6PC 2538 hgsc.bcm.edu 36 17 38316523 38316523 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_000151 exon5 c.T628G p.F210V . . . TP53 7157 hgsc.bcm.edu 36 17 7517845 7517845 + Missense_Mutation SNP C C T rs28934576 unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_001126114 exon8 c.G818A p.R273H TP53,central_nervous_system,brain,Substitution - Missense,-1 . . CD22 933 hgsc.bcm.edu 36 19 40527596 40527596 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_001185100 exon10 c.G2060A p.R687Q . . . ZNF585A 199704 hgsc.bcm.edu 36 19 42335270 42335270 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_199126 exon6 c.A1206C p.K402N . . . ZNF585A 199704 hgsc.bcm.edu 36 19 42335272 42335272 + Nonsense_Mutation SNP T T A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_199126 exon6 c.A1204T p.K402X . . . MYBPHL 343263 hgsc.bcm.edu 36 1 109640483 109640483 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_001010985 exon6 c.C763T p.R255X . . . SNIP1 79753 hgsc.bcm.edu 36 1 37778841 37778841 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_024700 exon3 c.C430T p.R144W . . . SIRPG 55423 hgsc.bcm.edu 36 20 1577815 1577815 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_001039508 exon2 c.C313T p.R105C . . . KRTAP19-5 337972 hgsc.bcm.edu 36 21 30796141 30796141 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_181611 exon1 c.G139A p.G47S . . . RNF149 284996 hgsc.bcm.edu 36 2 101264878 101264878 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_173647 exon6 c.G1034A p.S345N . . . SLC19A3 80704 hgsc.bcm.edu 36 2 228260514 228260514 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_025243 exon6 c.A1334G p.Y445C . . . SENP7 57337 hgsc.bcm.edu 36 3 102549470 102549470 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_020654 exon13 c.G1773A p.W591X . . . TRAT1 50852 hgsc.bcm.edu 36 3 110055333 110055333 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_016388 exon6 c.C480A p.S160R . . . ALPK1 80216 hgsc.bcm.edu 36 4 113523046 113523046 + Silent SNP G G A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_025144 exon4 c.G165A p.K55K . . . FLT4 2324 hgsc.bcm.edu 36 5 179969545 179969545 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_182925 exon28 c.T3773A p.F1258Y . . . BRAF 673 hgsc.bcm.edu 36 7 140099605 140099605 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . SLC24A2 25769 hgsc.bcm.edu 36 9 19776158 19776158 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_020344 exon2 c.G707T p.W236L . . . GPR112 139378 hgsc.bcm.edu 36 X 135309766 135309766 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_153834 exon21 c.G8400T p.L2800F . . . FAM47B 170062 hgsc.bcm.edu 36 X 34871709 34871709 + Silent SNP G G A novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_152631 exon1 c.G840A p.A280A . . . UPRT 139596 hgsc.bcm.edu 36 X 74410972 74410972 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3578-01A-01W-0831-10 TCGA-AG-3578-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 2ea76de8-6361-47f9-bbaa-c9bbdab397d0 a296ea9b-0304-4072-8bb0-efc6fe737e6a NM_145052 exon1 c.C158T p.T53M . . .