Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PTPRN2	5799	broad.mit.edu	36	7	157652437	157652438	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130842	exon5	c.806_807insC	p.Q269fs	.	.	.
MOBKL2A	126308	broad.mit.edu	36	19	2029278	2029279	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130807	exon3	c.282_283insG	p.G94fs	.	.	.
FAM133A	286499	broad.mit.edu	36	X	92851261	92851262	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171110	exon5	c.187_188insA	p.E63fs	.	.	.
SRRT	51593	broad.mit.edu	36	7	100323038	100323038	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128852	exon16	c.T2134G	p.W712G	.	.	.
AKR1B10	57016	broad.mit.edu	36	7	133872414	133872414	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020299	exon6	c.G624A	p.T208T	.	.	.
NUP205	23165	broad.mit.edu	36	7	134936784	134936784	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015135	exon17	c.C2501T	p.A834V	.	.	.
DGKI	9162	broad.mit.edu	36	7	136798784	136798784	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004717	exon28	c.G2750A	p.R917H	.	.	.
HIPK2	28996	broad.mit.edu	36	7	139062973	139062973	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_022740	exon2	c.G347A	p.R116H	.	.	.
SNX13	23161	broad.mit.edu	36	7	17827770	17827770	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015132	exon18	c.T1732C	p.Y578H	.	.	.
CARD11	84433	broad.mit.edu	36	7	2912819	2912819	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_032415	exon25	c.G3444T	p.W1148C	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98360738	98360738	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_003496	exon22	c.G2891A	p.W964X	.	.	.
ZNF498	221785	broad.mit.edu	36	7	99065034	99065034	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145115	exon8	c.G1090A	p.V364I	.	.	.
HNF4A	3172	broad.mit.edu	36	20	42476663	42476663	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030003	exon5	c.G529A	p.V177I	.	.	.
MATN4	8785	broad.mit.edu	36	20	43366379	43366379	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003833	exon3	c.C546T	p.R182R	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44025875	44025875	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022095	exon8	c.A1264G	p.N422D	.	.	.
CDH22	64405	broad.mit.edu	36	20	44240007	44240007	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_021248	exon10	c.G1900A	p.V634I	.	.	.
SS18L1	26039	broad.mit.edu	36	20	60181188	60181188	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198935	exon9	c.G972A	p.Q324Q	.	.	.
ZNF839	55778	broad.mit.edu	36	14	101862407	101862407	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018335	exon2	c.C621T	p.T207T	.	.	.
TRAF3	7187	broad.mit.edu	36	14	102412448	102412448	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145725	exon6	c.G403A	p.V135M	.	.	.
LRFN5	145581	broad.mit.edu	36	14	41425646	41425646	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152447	exon3	c.G68A	p.R23H	.	.	.
PRKCH	5583	broad.mit.edu	36	14	61066958	61066958	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006255	exon12	c.C1653T	p.H551H	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95839300	95839300	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018036	exon33	c.G4888A	p.D1630N	.	.	.
EML1	2009	broad.mit.edu	36	14	99475335	99475335	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001008707	exon22	c.G2297A	p.R766Q	.	.	.
TMED10	10972	broad.mit.edu	36	14	74671379	74671379	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01			G	-	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006827	exon5	c.622delC	p.L208fs	.	.	.
TMED10	10972	broad.mit.edu	36	14	74671382	74671383	+	Frame_Shift_Del	DEL	AG	-	-	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006827	exon5	c.618_619del	p.206_207del	.	.	.
MICAL3	57553	broad.mit.edu	36	22	16673510	16673511	+	Missense_Mutation	DNP	GT	CC	CC	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015241	exon28	c.5514_5515GG	.	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13275691	13275691	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001174080	exon16	c.C1997T	p.T666M	.	.	.
CYP4F22	126410	broad.mit.edu	36	19	15522490	15522490	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173483	exon13	c.C1341A	p.Y447X	.	.	.
CALR3	125972	broad.mit.edu	36	19	16455825	16455825	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145046	exon5	c.C594T	p.Y198Y	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22366721	22366721	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098626	exon4	c.G1156C	p.A386P	.	.	.
ZNF492	57615	broad.mit.edu	36	19	22639480	22639480	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020855	exon4	c.A1169C	p.E390A	.	.	.
DMKN	93099	broad.mit.edu	36	19	40694170	40694170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033317	exon5	c.G901A	p.G301S	.	.	.
PPP1R15A	23645	broad.mit.edu	36	19	54069174	54069174	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014330	exon2	c.C872A	p.S291X	.	.	.
SIGLEC9	27180	broad.mit.edu	36	19	56321153	56321153	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001198558	exon3	c.C704T	p.P235L	.	.	.
FCAR	2204	broad.mit.edu	36	19	60088593	60088593	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002000	exon3	c.C205T	p.R69X	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61165271	61165271	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_176811	exon4	c.G2069A	p.R690H	.	.	.
CHMP2A	27243	broad.mit.edu	36	19	63754893	63754893	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198426	exon6	c.G604T	p.A202S	.	.	.
ZNF34	80778	broad.mit.edu	36	8	145974264	145974264	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030580	exon4	c.C186T	p.D62D	.	.	.
ANK1	286	broad.mit.edu	36	8	41664877	41664877	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020475	exon35	c.G4212A	p.E1404E	.	.	.
VAV3	10451	broad.mit.edu	36	1	108308988	108308988	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006113	exon1	c.G27A	p.Q9Q	.	.	.
BCAS2	10286	broad.mit.edu	36	1	114914844	114914844	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005872	exon5	c.G470A	p.R157K	.	.	.
CLCN6	1185	broad.mit.edu	36	1	11811933	11811933	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021736	exon12	c.G1048A	p.E350K	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12253762	12253762	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018156	exon17	c.T2097C	p.D699D	.	.	.
HRNR	388697	broad.mit.edu	36	1	150454742	150454742	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009931	exon3	c.G5987T	p.R1996L	.	.	.
KCNN3	3782	broad.mit.edu	36	1	153108603	153108603	+	Silent	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002249	exon1	c.G462T	p.R154R	.	.	.
FCRL2	79368	broad.mit.edu	36	1	156003748	156003748	+	Silent	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030764	exon6	c.C1059A	p.S353S	.	.	.
AGMAT	79814	broad.mit.edu	36	1	15773887	15773887	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024758	exon6	c.G937A	p.V313M	.	.	.
NIT1	4817	broad.mit.edu	36	1	159355956	159355956	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185092	exon4	c.C387G	p.F129L	.	.	.
SPEN	23013	broad.mit.edu	36	1	16136994	16136995	+	Missense_Mutation	DNP	CC	AT	AT	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon13	c.10610_10611AT	.	.	.	.
TSEN15	116461	broad.mit.edu	36	1	182307951	182307951	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052965	exon4	c.G391A	p.G131S	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184358766	184358766	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031935	exon81	c.C12290T	p.T4097M	.	.	.
PTPN14	5784	broad.mit.edu	36	1	212616329	212616329	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005401	exon15	c.G2763A	p.A921A	.	.	.
ESRRG	2104	broad.mit.edu	36	1	214963209	214963209	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001438	exon1	c.A56G	p.E19G	.	.	.
PUM1	9698	broad.mit.edu	36	1	31199319	31199319	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001020658	exon15	c.C2420T	p.P807L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39626323	39626323	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012090	exon54	c.G9036A	p.Q3012Q	.	.	.
LRP8	7804	broad.mit.edu	36	1	53518909	53518909	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017522	exon4	c.C434T	p.S145L	.	.	.
ACOT7	11332	broad.mit.edu	36	1	6316186	6316186	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181864	exon4	c.C478T	p.L160L	.	.	.
ST6GALNAC5	81849	broad.mit.edu	36	1	77282846	77282846	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_030965	exon3	c.C631A	p.Q211K	.	.	.
MMP20	9313	broad.mit.edu	36	11	101992832	101992832	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004771	exon2	c.C295A	p.R99S	.	.	.
PATE1	160065	broad.mit.edu	36	11	125121445	125121445	+	Silent	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138294	exon1	c.G36T	p.L12L	.	.	.
OPCML	4978	broad.mit.edu	36	11	131811227	131811227	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001012393	exon7	c.C879A	p.N293K	.	.	.
LDLRAD3	143458	broad.mit.edu	36	11	36205506	36205506	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174902	exon5	c.G750A	p.A250A	.	.	.
OR8K3	219473	broad.mit.edu	36	11	55842516	55842516	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005202	exon1	c.C158A	p.S53Y	.	.	.
VWCE	220001	broad.mit.edu	36	11	60797292	60797292	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152718	exon13	c.C1654T	p.P552S	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62055002	62055002	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001620	exon5	c.G3463A	p.V1155I	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66218229	66218229	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_006946	exon21	c.C4460A	p.S1487Y	.	.	.
ANO1	55107	broad.mit.edu	36	11	69649929	69649930	+	Missense_Mutation	DNP	CA	TG	TG	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018043	exon10	c.1077_1078TG	.	.	.	.
RPS3	6188	broad.mit.edu	36	11	74789398	74789398	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005	exon2	c.G43C	p.G15R	.	.	.
MED23	9439	broad.mit.edu	36	6	131970884	131970884	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015979	exon13	c.T1116C	p.I372I	.	.	.
FOXF2	2295	broad.mit.edu	36	6	1339986	1339986	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001452	exon2	c.G1228A	p.V410I	.	.	.
GPR126	57211	broad.mit.edu	36	6	142763345	142763345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_001032394	exon10	c.G1514A	p.G505D	.	.	.
LTV1	84946	broad.mit.edu	36	6	144220809	144220809	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032860	exon6	c.T767A	p.L256Q	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151899180	151899180	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_025059	exon2	c.C92T	p.T31M	.	.	.
HLA-A	3105	broad.mit.edu	36	6	30019162	30019162	+	Missense_Mutation	SNP	A	C	C	rs72555400	unknown	TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002116	exon3	c.A482C	p.D161A	.	.	.
LTB	4050	broad.mit.edu	36	6	31656576	31656576	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002341	exon4	c.C624T	p.G208G	.	.	.
KIAA0240	23506	broad.mit.edu	36	6	42927890	42927890	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015349	exon6	c.G1922A	p.G641E	.	.	.
TMEM63B	55362	broad.mit.edu	36	6	44222636	44222636	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018426	exon11	c.C857A	p.A286E	.	.	.
ARHGAP44	9912	broad.mit.edu	36	17	12828817	12828817	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014859	exon20	c.C2184T	p.P728P	.	.	.
FBXW10	10517	broad.mit.edu	36	17	18593794	18593794	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031456	exon3	c.C705T	p.S235S	.	.	.
METT10D	79066	broad.mit.edu	36	17	2270095	2270095	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024086	exon10	c.T1608C	p.V536V	.	.	.
SPATA22	84690	broad.mit.edu	36	17	3317583	3317583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001170697	exon3	c.C59T	p.P20L	.	.	.
GFAP	2670	broad.mit.edu	36	17	40341009	40341009	+	Silent	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002055	exon8	c.C1206A	p.G402G	.	.	.
TP53	7157	broad.mit.edu	36	17	7517810	7517810	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.G853T	p.E285X	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
DNAH2	146754	broad.mit.edu	36	17	7620079	7620079	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020877	exon30	c.G4834A	p.D1612N	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40606152	40606152	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001389	exon9	c.G1788A	p.P596P	.	.	.
MYH11	4629	broad.mit.edu	36	16	15824768	15824768	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040114	exon3	c.C347T	p.T116M	.	.	.
IQCK	124152	broad.mit.edu	36	16	19745880	19745880	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153208	exon9	c.G722A	p.R241H	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2755263	2755263	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016333	exon11	c.G4733A	p.R1578Q	.	.	.
LONP2	83752	broad.mit.edu	36	16	46868798	46868798	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031490	exon8	c.G1290T	p.K430N	.	.	.
ALG1	56052	broad.mit.edu	36	16	5065441	5065441	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019109	exon4	c.T442G	p.C148G	.	.	.
ARL2BP	23568	broad.mit.edu	36	16	55843635	55843635	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012106	exon6	c.C447A	p.C149X	.	.	.
CDH16	1014	broad.mit.edu	36	16	65503931	65503931	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004062	exon11	c.G1336A	p.A446T	.	.	.
DUS2L	54920	broad.mit.edu	36	16	66670234	66670234	+	Silent	SNP	T	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017803	exon17	c.T1326G	p.G442G	.	.	.
PLA2G15	23659	broad.mit.edu	36	16	66850727	66850728	+	Missense_Mutation	DNP	TC	CA	CA	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012320	exon6	c.905_906CA	.	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19735178	19735178	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127718	exon10	c.G1099A	p.E367K	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46829114	46829114	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005359	exon3	c.C310T	p.L104F	.	.	.
SERPINB12	89777	broad.mit.edu	36	18	59379335	59379335	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080474	exon4	c.C422T	p.T141M	.	.	.
KIAA1407	57577	broad.mit.edu	36	3	115179770	115179770	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020817	exon16	c.G2559A	p.K853K	.	.	.
MRAS	22808	broad.mit.edu	36	3	139600088	139600088	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012219	exon4	c.G435A	p.A145A	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1419040	1419040	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014461	exon22	c.T2856C	p.I952I	.	.	.
SUSD5	26032	broad.mit.edu	36	3	33191515	33191515	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015551	exon4	c.C465T	p.T155T	.	.	.
C3orf39	84892	broad.mit.edu	36	3	43096540	43096540	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032806	exon2	c.G1388A	p.R463H	.	.	.
CCDC36	339834	broad.mit.edu	36	3	49269561	49269561	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178173	exon10	c.G1627A	p.D543N	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54512603	54512603	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018398	exon5	c.C426T	p.D142D	.	.	.
FRMD4B	23150	broad.mit.edu	36	3	69327153	69327153	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015123	exon15	c.A1287G	p.E429E	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73515590	73515590	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015009	exon10	c.G2817A	p.R939R	.	.	.
LRRC43	254050	broad.mit.edu	36	12	121243293	121243293	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001098519	exon7	c.G1138T	p.E380X	.	.	.
KRAS	3845	broad.mit.edu	36	12	25271543	25271543	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon3	c.A182T	p.Q61L	KRAS,thyroid,NS,Substitution - Missense,0	.	.
BICD1	636	broad.mit.edu	36	12	32338270	32338270	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001003398	exon3	c.C502T	p.L168F	.	.	.
EFCAB4B	84766	broad.mit.edu	36	12	3652922	3652922	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144959	exon7	c.C622T	p.L208F	.	.	.
PCBP2	5094	broad.mit.edu	36	12	52141121	52141121	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128911	exon7	c.G431A	p.R144Q	.	.	.
ACSM4	341392	broad.mit.edu	36	12	7354455	7354455	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080454	exon3	c.C466T	p.R156W	.	.	.
SLC2A14	144195	broad.mit.edu	36	12	7871459	7871459	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153449	exon8	c.C832A	p.Q278K	.	.	.
EEA1	8411	broad.mit.edu	36	12	91730916	91730916	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_003566	exon16	c.G2014T	p.A672S	.	.	.
IQCH	64799	broad.mit.edu	36	15	65474825	65474825	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031715	exon13	c.A1775G	p.D592G	.	.	.
AKAP13	11214	broad.mit.edu	36	15	83925048	83925048	+	Silent	SNP	G	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006738	exon7	c.G2745C	p.L915L	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87971235	87971235	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_152259	exon22	c.T5647G	p.F1883V	.	.	.
MAN2A2	4122	broad.mit.edu	36	15	89249542	89249543	+	Missense_Mutation	DNP	AA	CC	CC	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006122	exon2	c.190_191CC	.	.	.	.
TACR3	6870	broad.mit.edu	36	4	104859876	104859876	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001059	exon1	c.G406A	p.A136T	.	.	.
PDE5A	8654	broad.mit.edu	36	4	120747564	120747564	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033437	exon2	c.G333A	p.L111L	.	.	.
QRFPR	84109	broad.mit.edu	36	4	122469959	122469959	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198179	exon6	c.C1256G	p.S419C	.	.	.
CPEB2	132864	broad.mit.edu	36	4	14676929	14676929	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_001177383	exon11	c.G2842T	p.A948S	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65872485	65872485	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004439	exon18	c.T3056A	p.I1019N	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72648428	72648428	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003759	exon21	c.A3022G	p.M1008V	.	.	.
IBSP	3381	broad.mit.edu	36	4	88951945	88951945	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004967	exon7	c.C813T	p.Y271Y	.	.	.
RAB40AL	282808	broad.mit.edu	36	X	102079612	102079612	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031834	exon1	c.G710A	p.R237Q	.	.	.
ELF4	2000	broad.mit.edu	36	X	129032811	129032811	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001421	exon7	c.A694T	p.T232S	.	.	.
HAUS7	55559	broad.mit.edu	36	X	152381304	152381304	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017518	exon4	c.C342T	p.H114H	.	.	.
MAGEH1	28986	broad.mit.edu	36	X	55495990	55495990	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014061	exon1	c.G458A	p.R153H	.	.	.
CYLC1	1538	broad.mit.edu	36	X	83015637	83015637	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01			A	A	A	A	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_021118	exon4	c.1265delA	p.E422fs	.	.	.
DARS	1615	broad.mit.edu	36	2	136385468	136385468	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001349	exon14	c.A1296G	p.I432M	.	.	.
KCNH7	90134	broad.mit.edu	36	2	162959190	162959190	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033272	exon12	c.A2665T	p.K889X	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165705613	165705613	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006922	exon13	c.G1813A	p.E605K	.	.	.
TTN	7273	broad.mit.edu	36	2	179357131	179357131	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_133379	exon16	c.G2686A	p.V896I	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189607071	189607071	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000393	exon54	c.C4470T	p.G1490G	.	.	.
TNS1	7145	broad.mit.edu	36	2	218459584	218459584	+	Silent	SNP	G	A	A	rs13419876	unknown	TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022648	exon11	c.C522T	p.S174S	.	.	.
WDR69	164781	broad.mit.edu	36	2	228477967	228477967	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178821	exon8	c.G727A	p.V243I	.	.	.
CHRNG	1146	broad.mit.edu	36	2	233117778	233117778	+	Silent	SNP	T	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005199	exon11	c.T1302A	p.A434A	.	.	.
FSHR	2492	broad.mit.edu	36	2	49043544	49043544	+	Silent	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181446	exon9	c.G1842T	p.L614L	.	.	.
FSHR	2492	broad.mit.edu	36	2	49044049	49044049	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_181446	exon9	c.C1337A	p.T446K	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32621660	32621660	+	Silent	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153809	exon1	c.G3918T	p.V1306V	.	.	.
UBAP2	55833	broad.mit.edu	36	9	33978990	33978990	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018449	exon5	c.C423T	p.G141G	.	.	.
BRCA2	675	broad.mit.edu	36	13	31809879	31809879	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000059	exon11	c.G3387A	p.Q1129Q	.	.	.
WDFY2	115825	broad.mit.edu	36	13	51211197	51211197	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052950	exon7	c.G610A	p.A204T	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60884783	60884783	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022843	exon2	c.A1450G	p.N484D	.	.	.
SLC18A2	6571	broad.mit.edu	36	10	119004830	119004830	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003054	exon7	c.G753A	p.P251P	.	.	.
SEC24C	9632	broad.mit.edu	36	10	75198849	75198849	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198597	exon17	c.A2357G	p.D786G	.	.	.
MYST4	23522	broad.mit.edu	36	10	76411659	76411659	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012330	exon11	c.A2340C	p.E780D	.	.	.
PJA2	9867	broad.mit.edu	36	5	108707840	108707840	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014819	exon9	c.C1951G	p.P651A	.	.	.
APC	324	broad.mit.edu	36	5	112203115	112203115	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.G3871T	p.E1291X	APC,upper_aerodigestive_tract,sinonasal_and_nasal_cavity,Substitution - Missense,0	.	.
PCDHGA9	56107	broad.mit.edu	36	5	140763151	140763151	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018921	exon1	c.G448A	p.A150T	.	.	.
CDHR2	54825	broad.mit.edu	36	5	175928343	175928343	+	Silent	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171976	exon4	c.G183T	p.G61G	.	.	.
CDH9	1007	broad.mit.edu	36	5	26938577	26938577	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_016279	exon7	c.C1018A	p.Q340K	.	.	.
SLC1A3	6507	broad.mit.edu	36	5	36706932	36706932	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166695	exon3	c.C364T	p.R122X	.	.	.