Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target KIAA2026 158358 broad.mit.edu 36 9 5997467 5997468 + Frame_Shift_Ins INS - C C novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001017969 exon1 c.321_322insG p.G107fs . . . CMTM5 116173 broad.mit.edu 36 14 22917808 22917809 + Frame_Shift_Ins INS - C C novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 Unknown Unknown Somatic Phase_I Unspecified Illumina . . . . . . . RWDD2B 10069 broad.mit.edu 36 21 29300062 29300063 + Splice_Site INS - C C novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 Unknown Unknown Somatic Phase_I Unspecified Illumina . . . . . . . CMTM1 113540 broad.mit.edu 36 16 65158558 65158559 + Frame_Shift_Ins INS - T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 Unknown Unknown Somatic Phase_I Unspecified Illumina . . . . . . . PTN 5764 broad.mit.edu 36 7 136586609 136586609 + Missense_Mutation SNP C A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C C C C C Unknown Wildtype None Phase_I Unspecified 454 Illumina NM_002825 exon4 c.G359T p.G120V . . . ASL 435 broad.mit.edu 36 7 65195067 65195068 + Missense_Mutation DNP AG CA CA novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001024944 exon14 c.1172_1173CA . . . . AKAP9 10142 broad.mit.edu 36 7 91556697 91556697 + Silent SNP T G G novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 T T Unknown Unknown Somatic Phase_I Unspecified Illumina NM_147185 exon38 c.T9252G p.S3084S . . . DTD1 92675 broad.mit.edu 36 20 18524871 18524871 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_080820 exon3 c.C356T p.P119L . . . DNTTIP1 116092 broad.mit.edu 36 20 43857456 43857456 + Silent SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_052951 exon4 c.G339A p.L113L . . . GALNTL1 57452 broad.mit.edu 36 14 68884425 68884425 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_020692 exon14 c.G1492A p.G498R . . . DPF3 8110 broad.mit.edu 36 14 72207706 72207706 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_012074 exon9 c.C965T p.T322M . . . PNMAL2 57469 broad.mit.edu 36 19 51689428 51689428 + Missense_Mutation SNP T G G novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 T T T T T T Unknown Wildtype None Phase_I Unspecified 454 Illumina NM_020709 exon1 c.A1135C p.M379L . . . PREX2 80243 broad.mit.edu 36 8 69171852 69171852 + Silent SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_025170 exon22 c.G2415A p.K805K . . . TCHH 7062 broad.mit.edu 36 1 150351287 150351287 + Missense_Mutation SNP C G G novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_007113 exon2 c.G1030C p.E344Q . . . CD1C 911 broad.mit.edu 36 1 156528686 156528686 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001765 exon3 c.G517A p.V173I . . . OR2T4 127074 broad.mit.edu 36 1 246592349 246592349 + Missense_Mutation SNP C A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001004696 exon1 c.C844A p.L282I . . . LEPROT 54741 broad.mit.edu 36 1 65668308 65668308 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001198681 exon4 c.C295T p.R99C . . . KBTBD4 55709 broad.mit.edu 36 11 47555709 47555709 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_016506 exon2 c.G419A p.R140H . . . PRPF19 27339 broad.mit.edu 36 11 60426801 60426801 + Silent SNP A G G novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 A A Unknown Unknown Somatic Phase_I Unspecified Illumina NM_014502 exon4 c.T375C p.T125T . . . SLC22A8 9376 broad.mit.edu 36 11 62538986 62538986 + Silent SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001184732 exon2 c.G21A p.L7L . . . GRM5 2915 broad.mit.edu 36 11 87977536 87977536 + Silent SNP T C C novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 T T Unknown Unknown Somatic Phase_I Unspecified Illumina NM_000842 exon5 c.A1392G p.G464G . . . GPLD1 2822 broad.mit.edu 36 6 24545367 24545367 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001503 exon21 c.G2150A p.R717Q . . . TULP1 7287 broad.mit.edu 36 6 35581883 35581883 + Silent SNP G T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_003322 exon10 c.C874A p.R292R . . . OR1A1 8383 broad.mit.edu 36 17 3066541 3066541 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_014565 exon1 c.C877T p.R293W . . . SRP68 6730 broad.mit.edu 36 17 71580067 71580067 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_014230 exon1 c.G101A p.G34E . . . USP36 57602 broad.mit.edu 36 17 74314669 74314669 + Silent SNP T C C novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 T T Unknown Unknown Somatic Phase_I Unspecified Illumina NM_025090 exon14 c.A2052G p.P684P . . . RNF40 9810 broad.mit.edu 36 16 30687787 30687787 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_014771 exon15 c.G2225A p.R742H . . . SALL3 27164 broad.mit.edu 36 18 74858261 74858261 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_171999 exon3 c.G3854A p.R1285H . . . DZIP1L 199221 broad.mit.edu 36 3 139269138 139269138 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_173543 exon14 c.C1927T p.R643W . . . DNAH10 196385 broad.mit.edu 36 12 122985214 122985214 + Missense_Mutation SNP A C C novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 A A A A A A Unknown Wildtype None Phase_I Unspecified 454 Illumina NM_207437 exon77 c.A13217C p.D4406A . . . FAM113B 91523 broad.mit.edu 36 12 45915445 45915445 + Missense_Mutation SNP C G G novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_138371 exon2 c.C332G p.S111W . . . PA2G4 5036 broad.mit.edu 36 12 54791329 54791329 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_006191 exon11 c.C1034T p.S345F . . . CSRP2 1466 broad.mit.edu 36 12 75781118 75781118 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001321 exon3 c.C250T p.R84C . . . PPFIA2 8499 broad.mit.edu 36 12 80217222 80217222 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_003625 exon23 c.G2713A p.A905T . . . THBS1 7057 broad.mit.edu 36 15 37673656 37673656 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_003246 exon20 c.G3332A p.R1111H . . . CYP11A1 1583 broad.mit.edu 36 15 72418694 72418694 + Silent SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_000781 exon7 c.C1173T p.S391S . . . ACAN 176 broad.mit.edu 36 15 87183197 87183197 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001135 exon3 c.C370T p.R124C . . . MTTP 4547 broad.mit.edu 36 4 100734951 100734951 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G G G G G Unknown Wildtype None Phase_I Unspecified 454 Illumina NM_000253 exon8 c.G797A p.R266K . . . NR3C2 4306 broad.mit.edu 36 4 149400709 149400709 + Nonsense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001166104 exon3 c.C1768T p.R590X . . . RUFY3 22902 broad.mit.edu 36 4 71853124 71853124 + Missense_Mutation SNP T G G novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 T T T G T T Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_014961 exon5 c.T578G p.F193C . . . ELF4 2000 broad.mit.edu 36 X 129028557 129028557 + Silent SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001421 exon9 c.C1812T p.R604R . . . DMD 1756 broad.mit.edu 36 X 31896419 31896419 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C T T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_004011 exon17 c.G2549A p.R850Q . . . FAM123B 139285 broad.mit.edu 36 X 63328686 63328686 + Frame_Shift_Del DEL T - - novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 T - T T Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_152424 exon2 c.1206delA p.E402fs . . . BIN1 274 broad.mit.edu 36 2 127522609 127522609 + Missense_Mutation SNP C A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_139348 exon15 c.G1412T p.G471V . . . THSD7B 80731 broad.mit.edu 36 2 137589252 137589252 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001080427 exon4 c.G1195A p.V399M . . . LRP2 4036 broad.mit.edu 36 2 169730783 169730783 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_004525 exon62 c.G11663A p.R3888H . . . ITGAV 3685 broad.mit.edu 36 2 187248653 187248653 + Nonsense_Mutation SNP C A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C C A C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001144999 exon27 c.C2646A p.Y882X . . . GPR113 165082 broad.mit.edu 36 2 26387859 26387860 + Missense_Mutation DNP GC AT AT novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001145169 exon10 c.2033_2034AT . . . . SOCS5 9655 broad.mit.edu 36 2 46840564 46840564 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_144949 exon2 c.C1391T p.S464L . . . ZNF462 58499 broad.mit.edu 36 9 108734598 108734598 + Silent SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_021224 exon5 c.C6063T p.R2021R . . . LRRC8A 56262 broad.mit.edu 36 9 130710839 130710839 + Silent SNP C G G novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_019594 exon3 c.C1575G p.G525G . . . NALCN 259232 broad.mit.edu 36 13 100827175 100827175 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_052867 exon6 c.C521T p.S174L . . . FLT1 2321 broad.mit.edu 36 13 27801789 27801789 + Silent SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_002019 exon19 c.C2670T p.N890N . . . INTS6 26512 broad.mit.edu 36 13 50859665 50859665 + Missense_Mutation SNP T A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 T T Unknown Unknown Somatic Phase_I Unspecified Illumina NM_012141 exon7 c.A752T p.D251V . . . NT5C2 22978 broad.mit.edu 36 10 104840691 104840691 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_012229 exon17 c.C1264T p.R422C . . . ERCC6 2074 broad.mit.edu 36 10 50348596 50348596 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_000124 exon18 c.C3416T p.S1139F . . . TET1 80312 broad.mit.edu 36 10 70121237 70121237 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_030625 exon12 c.G6071A p.R2024Q . . . APC 324 broad.mit.edu 36 5 112144491 112144491 + Nonsense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001127511 exon5 c.C667T p.R223X APC,large_intestine,rectum,Substitution - Nonsense,0 . . NRG2 9542 broad.mit.edu 36 5 139247244 139247244 + Missense_Mutation SNP G A A novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_013981 exon2 c.C737T p.T246M . . . PCDHA3 56145 broad.mit.edu 36 5 140161258 140161258 + Missense_Mutation SNP C T T novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_031497 exon1 c.C292T p.R98W . . . PCDHB16 57717 broad.mit.edu 36 5 140544037 140544037 + Silent SNP T C C novel TCGA-AG-A02G-01 TCGA-AG-A02G-01 T T Unknown Unknown Somatic Phase_I Unspecified Illumina NM_020957 exon1 c.T1719C p.T573T . . .