Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target TRIM24 8805 hgsc.bcm.edu 36 7 137850607 137850607 + Silent SNP A A G novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_003852 exon3 c.A594G p.K198K . . . NPY 4852 hgsc.bcm.edu 36 7 24297825 24297825 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_000905 exon4 c.G288A p.M96I . . . C7orf42 55069 hgsc.bcm.edu 36 7 66044371 66044371 + Silent SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_017994 exon2 c.C84T p.S28S . . . CALN1 83698 hgsc.bcm.edu 36 7 71381703 71381703 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_031468 exon3 c.G148A p.A50T . . . C20orf151 140893 hgsc.bcm.edu 36 20 60425691 60425691 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_080833 exon4 c.C184T p.R62W . . . SLC39A2 29986 hgsc.bcm.edu 36 14 20538946 20538946 + Missense_Mutation SNP A A G novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_014579 exon4 c.A298G p.M100V . . . CECR1 51816 hgsc.bcm.edu 36 22 16043506 16043506 + Silent SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_177405 exon5 c.C504T p.P168P . . . PISD 23761 hgsc.bcm.edu 36 22 30346634 30346634 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_014338 exon8 c.C808T p.R270W . . . TBCB 1155 hgsc.bcm.edu 36 19 41308494 41308494 + Silent SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001281 exon6 c.G705A p.P235P . . . ZNF420 147923 hgsc.bcm.edu 36 19 42311181 42311181 + Missense_Mutation SNP C C A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_144689 exon5 c.C1448A p.S483Y . . . IRF3 3661 hgsc.bcm.edu 36 19 54858478 54858478 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001197123 exon3 c.C166T p.R56C . . . ZNF211 10520 hgsc.bcm.edu 36 19 62845261 62845261 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_198855 exon3 c.C1595T p.T532M . . . NTNG1 22854 hgsc.bcm.edu 36 1 107668869 107668869 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001113228 exon3 c.C689T p.A230V . . . IL6R 3570 hgsc.bcm.edu 36 1 152668354 152668354 + Silent SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_181359 exon2 c.G144A p.P48P . . . CD1A 909 hgsc.bcm.edu 36 1 156493905 156493905 + Silent SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001763 exon5 c.G954A p.A318A . . . OR6N2 81442 hgsc.bcm.edu 36 1 157013311 157013311 + Missense_Mutation SNP C C A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001005278 exon1 c.G739T p.V247L . . . HIST3H2BB 128312 hgsc.bcm.edu 36 1 226712493 226712493 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_175055 exon1 c.G40A p.G14S . . . HIVEP3 59269 hgsc.bcm.edu 36 1 41756704 41756704 + Missense_Mutation SNP T T A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_024503 exon7 c.A5426T p.K1809M . . . LRP8 7804 hgsc.bcm.edu 36 1 53502456 53502456 + Missense_Mutation SNP C C G novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_017522 exon9 c.G1241C p.R414P . . . CLCA2 9635 hgsc.bcm.edu 36 1 86691736 86691736 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_006536 exon13 c.C2252T p.S751L . . . CBL 867 hgsc.bcm.edu 36 11 118654178 118654178 + Silent SNP T T C novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_005188 exon8 c.T1188C p.C396C CBL,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 . . OR56A1 120796 hgsc.bcm.edu 36 11 6005217 6005217 + Silent SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001001917 exon1 c.G294A p.S98S . . . SLC22A6 9356 hgsc.bcm.edu 36 11 62505945 62505945 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004790 exon4 c.C742T p.R248C . . . PKHD1 5314 hgsc.bcm.edu 36 6 52031337 52031337 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_170724 exon16 c.G1255A p.V419I . . . TTLL6 284076 hgsc.bcm.edu 36 17 44202279 44202279 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001130918 exon14 c.G2220A p.M740I . . . UBE2O 63893 hgsc.bcm.edu 36 17 71908728 71908728 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_022066 exon6 c.G853A p.V285M . . . TP53 7157 hgsc.bcm.edu 36 17 7519131 7519131 + Missense_Mutation SNP C C T rs28934578 unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001126114 exon5 c.G524A p.R175H TP53,lung,NS,Substitution - Missense,0 . . DNAH2 146754 hgsc.bcm.edu 36 17 7642346 7642346 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_020877 exon53 c.C8377T p.R2793W . . . AGPAT3 56894 hgsc.bcm.edu 36 21 44215755 44215755 + Silent SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_020132 exon7 c.G723A p.L241L . . . PHKB 5257 hgsc.bcm.edu 36 16 46284876 46284876 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001031835 exon29 c.G2831A p.R944H . . . CDH8 1006 hgsc.bcm.edu 36 16 60492815 60492815 + Missense_Mutation SNP C C A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001796 exon3 c.G316T p.G106W . . . LRRC36 55282 hgsc.bcm.edu 36 16 65933379 65933379 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_018296 exon2 c.C89T p.S30L . . . CHST4 10164 hgsc.bcm.edu 36 16 70128946 70128946 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001166395 exon2 c.C865T p.R289X . . . USP7 7874 hgsc.bcm.edu 36 16 8899922 8899922 + Silent SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_003470 exon24 c.G2607A p.K869K . . . ROCK1 6093 hgsc.bcm.edu 36 18 16804410 16804410 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_005406 exon23 c.G2717A p.R906Q . . . SMAD4 4089 hgsc.bcm.edu 36 18 46827583 46827583 + Missense_Mutation SNP T T G novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_005359 exon2 c.T169G p.L57V . . . LAMA1 284217 hgsc.bcm.edu 36 18 7023010 7023010 + Silent SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_005559 exon15 c.G2136A p.P712P . . . KIAA0802 23255 hgsc.bcm.edu 36 18 8809107 8809107 + Silent SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_015210 exon13 c.G3006A p.P1002P . . . HRH1 3269 hgsc.bcm.edu 36 3 11276062 11276062 + Silent SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001098211 exon2 c.G339A p.A113A . . . CPB1 1360 hgsc.bcm.edu 36 3 150045176 150045176 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001871 exon8 c.G710A p.R237H . . . PRMT8 56341 hgsc.bcm.edu 36 12 3572526 3572526 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_019854 exon10 c.C1102T p.R368X . . . SECISBP2L 9728 hgsc.bcm.edu 36 15 47112508 47112508 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_014701 exon4 c.G610A p.G204S . . . RAB28 9364 hgsc.bcm.edu 36 4 12980655 12980655 + Silent SNP C C A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_004249 exon7 c.G606T p.P202P . . . NR3C2 4306 hgsc.bcm.edu 36 4 149577411 149577411 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001166104 exon2 c.C52T p.R18W . . . HMGB2 3148 hgsc.bcm.edu 36 4 174491343 174491343 + Silent SNP G G T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_002129 exon2 c.C33A p.G11G . . . ADAMTS3 9508 hgsc.bcm.edu 36 4 73424270 73424270 + Silent SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_014243 exon5 c.G666A p.S222S . . . SPARCL1 8404 hgsc.bcm.edu 36 4 88630546 88630546 + Silent SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001128310 exon8 c.C1434T p.T478T . . . PLS3 5358 hgsc.bcm.edu 36 X 114781033 114781033 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_005032 exon9 c.G949A p.G317S . . . DTYMK 1841 hgsc.bcm.edu 36 2 242268388 242268388 + Missense_Mutation SNP A A T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001165031 exon3 c.T259A p.L87M . . . CHAC2 494143 hgsc.bcm.edu 36 2 53855137 53855137 + Missense_Mutation SNP G G C novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001008708 exon3 c.G526C p.E176Q . . . CDKN2A 1029 hgsc.bcm.edu 36 9 21960974 21960974 + Silent SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_000077 exon2 c.G384A p.R128R CDKN2A,pancreas,NS,Substitution - Missense,+2 . . DNAI1 27019 hgsc.bcm.edu 36 9 34502387 34502387 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C T T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_012144 exon15 c.C1454T p.T485M . . . LIG4 3981 hgsc.bcm.edu 36 13 107661419 107661419 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_002312 exon2 c.G199A p.A67T . . . GPC5 2262 hgsc.bcm.edu 36 13 91178835 91178835 + Missense_Mutation SNP C C T novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_004466 exon4 c.C1069T p.R357C . . . IDI2 91734 hgsc.bcm.edu 36 10 1055499 1055499 + Silent SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_033261 exon5 c.C642T p.D214D . . . SORCS3 22986 hgsc.bcm.edu 36 10 107012153 107012153 + Missense_Mutation SNP A A C novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_014978 exon26 c.A3518C p.Q1173P . . . HEXB 3074 hgsc.bcm.edu 36 5 74049904 74049904 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_000521 exon10 c.G1202A p.G401E . . . C1orf212 113444 hgsc.bcm.edu 36 1 35093759 35093759 + Missense_Mutation SNP G G A novel unknown TCGA-AG-A016-01A-01W-A005-10 TCGA-AG-A016-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID . . . . . . .