Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
LRRN3	54674	hgsc.bcm.edu	36	7	110551065	110551065	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018334	exon2	c.C1001G	p.P334R	.	.	.
CHRM2	1129	hgsc.bcm.edu	36	7	136350224	136350224	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000739	exon4	c.G72T	p.V24V	.	.	.
CBX3	11335	hgsc.bcm.edu	36	7	26212641	26212641	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007276	exon3	c.G153C	p.W51C	.	.	.
SPDYE1	285955	hgsc.bcm.edu	36	7	44008817	44008817	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175064	exon2	c.G363A	p.V121V	.	.	.
TMEM130	222865	hgsc.bcm.edu	36	7	98283657	98283657	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001134451	exon7	c.G924T	p.L308L	.	.	.
TMC2	117532	hgsc.bcm.edu	36	20	2530875	2530875	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080751	exon11	c.C1341A	p.L447L	.	.	.
RTEL1	51750	hgsc.bcm.edu	36	20	61769326	61769326	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016434	exon8	c.G675A	p.P225P	.	.	.
WBP2NL	164684	hgsc.bcm.edu	36	22	40752824	40752824	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152613	exon6	c.T623C	p.V208A	.	.	.
ZNF540	163255	hgsc.bcm.edu	36	19	42795205	42795205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152606	exon5	c.G1184A	p.R395H	.	.	.
TTYH1	57348	hgsc.bcm.edu	36	19	59633568	59633568	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005367	exon8	c.C912A	p.N304K	.	.	.
NLRP8	126205	hgsc.bcm.edu	36	19	61165373	61165373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_176811	exon4	c.C2171T	p.A724V	.	.	.
SLC6A17	388662	hgsc.bcm.edu	36	1	110541617	110541617	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001010898	exon11	c.G1688A	p.R563H	.	.	.
VTCN1	79679	hgsc.bcm.edu	36	1	117497387	117497387	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024626	exon4	c.C573A	p.F191L	.	.	.
C1orf63	57035	hgsc.bcm.edu	36	1	25444303	25444303	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020317	exon3	c.T597G	p.A199A	.	.	.
CATSPER4	378807	hgsc.bcm.edu	36	1	26399965	26399965	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198137	exon8	c.G1045A	p.A349T	.	.	.
CYP2J2	1573	hgsc.bcm.edu	36	1	60150510	60150510	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000775	exon3	c.A435G	p.L145L	.	.	.
LPHN2	23266	hgsc.bcm.edu	36	1	82181502	82181502	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012302	exon5	c.T659C	p.F220S	.	.	.
DPAGT1	1798	hgsc.bcm.edu	36	11	118476277	118476277	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001382	exon4	c.C548G	p.A183G	.	.	.
CLPB	81570	hgsc.bcm.edu	36	11	71682142	71682142	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030813	exon17	c.G2041C	p.E681Q	.	.	.
LHFPL5	222662	hgsc.bcm.edu	36	6	35881536	35881536	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182548	exon1	c.C111T	p.S37S	.	.	.
TREML1	340205	hgsc.bcm.edu	36	6	41226550	41226550	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178174	exon4	c.G553T	p.A185S	.	.	.
ICK	22858	hgsc.bcm.edu	36	6	53013943	53013943	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016513	exon3	c.C51T	p.S17S	.	.	.
MPP2	4355	hgsc.bcm.edu	36	17	39337350	39337350	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005374	exon2	c.C5T	p.P2L	.	.	.
KIF2B	84643	hgsc.bcm.edu	36	17	49255563	49255563	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032559	exon1	c.C170T	p.T57M	.	.	.
ABCA10	10349	hgsc.bcm.edu	36	17	64727364	64727364	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080282	exon7	c.C447A	p.Y149X	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.
USP25	29761	hgsc.bcm.edu	36	21	16120516	16120516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_013396	exon13	c.C1427T	p.S476F	.	.	.
CHODL	140578	hgsc.bcm.edu	36	21	18550906	18550906	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024944	exon2	c.G289T	p.G97C	.	.	.
FHOD3	80206	hgsc.bcm.edu	36	18	32552149	32552149	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025135	exon16	c.G2365A	p.V789I	.	.	.
TGIF1	7050	hgsc.bcm.edu	36	18	3447387	3447387	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003244	exon3	c.C268G	p.R90G	.	.	.
IFT122	55764	hgsc.bcm.edu	36	3	130704282	130704282	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052990	exon17	c.G2081A	p.R694H	.	.	.
MSL2	55167	hgsc.bcm.edu	36	3	137396616	137396616	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018133	exon1	c.C30T	p.Y10Y	.	.	.
MFN1	55669	hgsc.bcm.edu	36	3	180578826	180578826	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033540	exon13	c.T1333C	p.L445L	.	.	.
RNF123	63891	hgsc.bcm.edu	36	3	49717133	49717133	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022064	exon22	c.C1899A	p.L633L	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
DBX2	440097	hgsc.bcm.edu	36	12	43696380	43696380	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004329	exon4	c.G976T	p.E326X	.	.	.
SMARCC2	6601	hgsc.bcm.edu	36	12	54863949	54863949	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139067	exon7	c.A595T	p.K199X	.	.	.
MESDC2	23184	hgsc.bcm.edu	36	15	79058810	79058810	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015154	exon3	c.C510G	p.I170M	.	.	.
C4orf21	55345	hgsc.bcm.edu	36	4	113759126	113759126	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018392	exon6	c.A1521C	p.K507N	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155400159	155400159	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017639	exon20	c.T5412A	p.A1804A	.	.	.
CLCN3	1182	hgsc.bcm.edu	36	4	170864747	170864747	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001829	exon11	c.G1904A	p.R635Q	.	.	.
GABRG1	2565	hgsc.bcm.edu	36	4	45748199	45748199	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173536	exon8	c.C1130A	p.S377X	.	.	.
CLCN4	1183	hgsc.bcm.edu	36	X	10136319	10136319	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001830	exon9	c.C1078T	p.R360C	.	.	.
RAB40A	142684	hgsc.bcm.edu	36	X	102642215	102642215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080879	exon3	c.G126A	p.P42P	.	.	.
IL13RA2	3598	hgsc.bcm.edu	36	X	114155332	114155332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000640	exon4	c.C308T	p.A103V	.	.	.
TLR8	51311	hgsc.bcm.edu	36	X	12847159	12847159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138636	exon2	c.G79A	p.E27K	.	.	.
MBNL3	55796	hgsc.bcm.edu	36	X	131348376	131348376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001170704	exon6	c.C628T	p.P210S	.	.	.
MAMLD1	10046	hgsc.bcm.edu	36	X	149390240	149390240	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177466	exon2	c.G1662A	p.T554T	.	.	.
NR0B1	190	hgsc.bcm.edu	36	X	30232738	30232738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000475	exon2	c.G1292A	p.S431N	.	.	.
FAM47C	442444	hgsc.bcm.edu	36	X	36938802	36938802	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001013736	exon1	c.C2398T	p.R800C	.	.	.
WNK3	65267	hgsc.bcm.edu	36	X	54292244	54292244	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001002838	exon17	c.C3262A	p.Q1088K	.	.	.
NLGN4X	57502	hgsc.bcm.edu	36	X	5957388	5957388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020742	exon3	c.C558T	p.D186D	.	.	.
STAT4	6775	hgsc.bcm.edu	36	2	191637889	191637889	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003151	exon8	c.A671C	p.D224A	.	.	.
PGAP1	80055	hgsc.bcm.edu	36	2	197443928	197443928	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024989	exon19	c.T1749C	p.F583F	.	.	.
ARHGAP25	9938	hgsc.bcm.edu	36	2	68906724	68906724	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166276	exon10	c.G1814A	p.R605H	.	.	.
RALGPS1	9649	hgsc.bcm.edu	36	9	128836601	128836601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014636	exon5	c.G287A	p.R96Q	.	.	.
UNC13B	10497	hgsc.bcm.edu	36	9	35390422	35390422	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006377	exon36	c.C4219T	p.R1407C	.	.	.
PABPC3	5042	hgsc.bcm.edu	36	13	24569151	24569151	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030979	exon1	c.G815A	p.R272Q	.	.	.
POMP	51371	hgsc.bcm.edu	36	13	28136656	28136656	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015932	exon3	c.G112C	p.V38L	.	.	.
BRCA2	675	hgsc.bcm.edu	36	13	31827036	31827036	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000059	exon14	c.T7046G	p.F2349C	.	.	.
GPR158	57512	hgsc.bcm.edu	36	10	25901753	25901753	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020752	exon7	c.G1684A	p.G562R	.	.	.
PPYR1	5540	hgsc.bcm.edu	36	10	46507192	46507192	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005972	exon3	c.G403A	p.V135M	.	.	.
PRKCQ	5588	hgsc.bcm.edu	36	10	6597007	6597007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006257	exon2	c.G97A	p.V33I	.	.	.
TET1	80312	hgsc.bcm.edu	36	10	70102677	70102677	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030625	exon8	c.G4693T	p.G1565X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112202815	112202815	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.G3571T	p.E1191X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203379	112203379	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.G4135T	p.E1379X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
PCDHA13	56136	hgsc.bcm.edu	36	5	140242101	140242101	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031865	exon1	c.G64T	p.A22S	.	.	.
PCDH24	54825	hgsc.bcm.edu	36	5	175948689	175948689	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001171976	exon22	c.C2908T	p.R970X	.	.	.
TMEM167A	153339	hgsc.bcm.edu	36	5	82393451	82393451	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	.	.	.	.	.	.	.