Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
HSF4	3299	broad.mit.edu	36	16	65759166	65759167	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-4008-01	TCGA-AG-4008-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040667	exon11	c.897_898insG	p.P299fs	.	.	.
TNS3	64759	broad.mit.edu	36	7	47309390	47309390	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_022748	exon22	c.C3140T	p.A1047V	.	.	.
PMS2	5395	broad.mit.edu	36	7	5996015	5996015	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000535	exon10	c.G1086A	p.M362I	.	.	.
PCIF1	63935	broad.mit.edu	36	20	44002530	44002530	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022104	exon5	c.T259A	p.L87M	.	.	.
CDH22	64405	broad.mit.edu	36	20	44236973	44236973	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021248	exon11	c.G2066T	p.R689L	.	.	.
SLC13A3	64849	broad.mit.edu	36	20	44675738	44675738	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001193339	exon2	c.G145T	p.A49S	.	.	.
KCNB1	3745	broad.mit.edu	36	20	47424742	47424742	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004975	exon2	c.G762A	p.K254K	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57200970	57200970	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178457	exon1	c.G1501A	p.V501I	.	.	.
ZCCHC3	85364	broad.mit.edu	36	20	226688	226690	+	In_Frame_Del	DEL	CGG	-	-	novel		TCGA-AG-4008-01	TCGA-AG-4008-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033089	exon1	c.461_463del	p.154_155del	.	.	.
OR11H12	440153	broad.mit.edu	36	14	18447838	18447838	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013354	exon1	c.C245T	p.S82F	.	.	.
OR4N2	390429	broad.mit.edu	36	14	19366134	19366134	+	Silent	SNP	T	C	C	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004723	exon1	c.T687C	p.S229S	.	.	.
BMP4	652	broad.mit.edu	36	14	53487096	53487096	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130851	exon4	c.C631T	p.R211W	.	.	.
SLC25A47	283600	broad.mit.edu	36	14	99863392	99863392	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207117	exon4	c.G259A	p.G87S	.	.	.
GGTLC2	91227	broad.mit.edu	36	22	21319502	21319502	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199127	exon3	c.C354T	p.D118D	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25039847	25039847	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001184776	exon9	c.G1994A	p.R665Q	.	.	.
GMIP	51291	broad.mit.edu	36	19	19606480	19606480	+	Silent	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016573	exon18	c.C1920T	p.Y640Y	.	.	.
ZNF492	57615	broad.mit.edu	36	19	22639836	22639836	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020855	exon4	c.A1525G	p.S509G	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23336687	23336687	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003430	exon4	c.C934T	p.H312Y	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40967779	40967779	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052948	exon17	c.G1652A	p.R551H	.	.	.
RSPH6A	81492	broad.mit.edu	36	19	50990981	50990981	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_030785	exon6	c.G2140A	p.E714K	.	.	.
CACNG7	59284	broad.mit.edu	36	19	59110508	59110508	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031896	exon3	c.G361T	p.G121C	.	.	.
CRISPLD1	83690	broad.mit.edu	36	8	76104233	76104233	+	Silent	SNP	T	G	G	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031461	exon14	c.T1377G	p.G459G	.	.	.
PRDX6	9588	broad.mit.edu	36	1	171721152	171721152	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004905	exon3	c.C282T	p.P94P	.	.	.
SERPINC1	462	broad.mit.edu	36	1	172145476	172145476	+	Silent	SNP	T	C	C	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000488	exon5	c.A990G	p.E330E	.	.	.
CRB1	23418	broad.mit.edu	36	1	195657469	195657469	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_201253	exon6	c.T1888G	p.F630V	.	.	.
PPP1R12B	4660	broad.mit.edu	36	1	200731198	200731198	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002481	exon16	c.C2300A	p.T767K	.	.	.
AVPR1B	553	broad.mit.edu	36	1	204391974	204391974	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_000707	exon1	c.C911A	p.S304Y	.	.	.
ARID4B	51742	broad.mit.edu	36	1	233402661	233402661	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031371	exon22	c.C3448A	p.L1150I	.	.	.
DAB1	1600	broad.mit.edu	36	1	57249438	57249438	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_021080	exon15	c.G1540C	p.E514Q	.	.	.
MRGPRX1	259249	broad.mit.edu	36	11	18912799	18912799	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_147199	exon1	c.G109A	p.V37I	.	.	.
OR4A5	81318	broad.mit.edu	36	11	51268884	51268884	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005272	exon1	c.T88G	p.L30V	.	.	.
CDC42BPG	55561	broad.mit.edu	36	11	64356786	64356786	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017525	exon26	c.G2871A	p.P957P	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65948951	65948951	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178864	exon7	c.C2014A	p.L672M	.	.	.
RPS6KB2	6199	broad.mit.edu	36	11	66956648	66956648	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003952	exon6	c.T459G	p.G153G	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101418755	101418755	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022091	exon3	c.G147T	p.K49N	.	.	.
TRIM10	10107	broad.mit.edu	36	6	30236198	30236198	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006778	exon1	c.G417A	p.A139A	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73017397	73017397	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001168409	exon9	c.T604C	p.W202R	.	.	.
RAB11FIP4	84440	broad.mit.edu	36	17	26872486	26872486	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032932	exon5	c.C746T	p.S249L	.	.	.
RPL19	6143	broad.mit.edu	36	17	34614312	34614312	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000981	exon6	c.C476T	p.A159V	.	.	.
KRT37	8688	broad.mit.edu	36	17	36831320	36831320	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003770	exon6	c.G1066A	p.G356S	.	.	.
C17orf87	388325	broad.mit.edu	36	17	5058979	5058979	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207103	exon4	c.T248C	p.L83P	.	.	.
TP53	7157	broad.mit.edu	36	17	7519203	7519203	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001126114	exon5	c.C452A	p.P151H	TP53,upper_aerodigestive_tract,mouth,Substitution - Missense,-1	.	.
NCAM2	4685	broad.mit.edu	36	21	21618583	21618583	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004540	exon6	c.C629A	p.A210E	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21053126	21053126	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017539	exon7	c.C1037T	p.T346M	.	.	.
BOC	91653	broad.mit.edu	36	3	114476214	114476214	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033254	exon9	c.C1537T	p.R513C	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123208592	123208592	+	Silent	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175924	exon2	c.C165T	p.D55D	.	.	.
MECOM	2122	broad.mit.edu	36	3	170290715	170290715	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105077	exon15	c.G2799A	p.M933I	.	.	.
SEMA3G	56920	broad.mit.edu	36	3	52444684	52444684	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020163	exon16	c.C2324T	p.T775M	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107158305	107158305	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014653	exon8	c.C1199T	p.T400M	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111192464	111192464	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001109662	exon11	c.A1579G	p.M527V	.	.	.
TPCN1	53373	broad.mit.edu	36	12	112215501	112215501	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017901	exon27	c.C2298T	p.S766S	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289552	+	Missense_Mutation	DNP	CC	AA	AA	novel		TCGA-AG-4008-01	TCGA-AG-4008-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.34_35TT	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	.
KIAA0748	9840	broad.mit.edu	36	12	53642686	53642686	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098815	exon9	c.G1263A	p.T421T	.	.	.
CHD4	1108	broad.mit.edu	36	12	6562530	6562530	+	Silent	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001273	exon27	c.C4071T	p.D1357D	.	.	.
PZP	5858	broad.mit.edu	36	12	9209966	9209966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002864	exon18	c.C2207T	p.T736M	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39894226	39894226	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-4008-01	TCGA-AG-4008-01			G	-	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014994	exon10	c.1167delG	p.V389fs	.	.	.
NDST3	9348	broad.mit.edu	36	4	119367547	119367547	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004784	exon8	c.G1781A	p.R594H	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6134256	6134256	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144720	exon6	c.C1082T	p.T361M	.	.	.
MEPE	56955	broad.mit.edu	36	4	88986486	88986486	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001184697	exon6	c.G1103A	p.R368Q	.	.	.
MAGEB6	158809	broad.mit.edu	36	X	26122486	26122486	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173523	exon2	c.C602T	p.T201M	.	.	.
ITIH5L	347365	broad.mit.edu	36	X	54794496	54794496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198510	exon12	c.C3395T	p.P1132L	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5831698	5831698	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020742	exon5	c.G1021A	p.G341R	.	.	.
GPR45	11250	broad.mit.edu	36	2	105225422	105225422	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007227	exon1	c.C675T	p.N225N	.	.	.
YSK4	80122	broad.mit.edu	36	2	135454892	135454892	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_025052	exon9	c.G3889A	p.A1297T	.	.	.
PXDN	7837	broad.mit.edu	36	2	1631077	1631077	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012293	exon17	c.G3482A	p.R1161Q	.	.	.
TTN	7273	broad.mit.edu	36	2	179135839	179135839	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003319	exon154	c.A56070T	p.K18690N	.	.	.
TTN	7273	broad.mit.edu	36	2	179143209	179143209	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003319	exon154	c.A48700G	p.R16234G	.	.	.
TRAF3IP1	26146	broad.mit.edu	36	2	238902614	238902614	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001139490	exon5	c.C807T	p.R269R	.	.	.
ADCY3	109	broad.mit.edu	36	2	24904417	24904417	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004036	exon13	c.G2290A	p.A764T	.	.	.
SRD5A2	6716	broad.mit.edu	36	2	31659232	31659232	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000348	exon1	c.G242A	p.R81Q	.	.	.
PNPT1	87178	broad.mit.edu	36	2	55736825	55736825	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033109	exon17	c.T1386G	p.I462M	.	.	.
EHBP1	23301	broad.mit.edu	36	2	63077367	63077367	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142614	exon19	c.C3173T	p.A1058V	.	.	.
WDR92	116143	broad.mit.edu	36	2	68219464	68219464	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138458	exon5	c.G547T	p.V183F	.	.	.
BMP10	27302	broad.mit.edu	36	2	68947172	68947172	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014482	exon2	c.C370T	p.R124X	.	.	.
IARS	3376	broad.mit.edu	36	9	94025458	94025458	+	Missense_Mutation	SNP	T	G	G	rs556155	by-cluster,by-frequency,by-submitter,by-2hit-2allele,by-hapmap	TCGA-AG-4008-01	TCGA-AG-4008-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013417	exon32	c.A3544C	p.K1182Q	.	.	.
JAKMIP3	282973	broad.mit.edu	36	10	133800763	133800763	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001105521	exon7	c.G1264A	p.G422S	.	.	.
PAM	5066	broad.mit.edu	36	5	102353973	102353973	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138822	exon15	c.T1582A	p.F528I	.	.	.
REEP2	51308	broad.mit.edu	36	5	137808115	137808115	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016606	exon4	c.A295G	p.K99E	.	.	.
HSPA9	3313	broad.mit.edu	36	5	137934634	137934634	+	Silent	SNP	C	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004134	exon4	c.G324A	p.Q108Q	.	.	.
SLC4A9	83697	broad.mit.edu	36	5	139722699	139722699	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031467	exon7	c.C826A	p.R276S	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80402140	80402140	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006909	exon4	c.T617C	p.I206T	.	.	.