Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
WIZ	58525	broad.mit.edu	36	19	15396042	15396043	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021241	exon7	c.2177_2178insC	p.Q726fs	.	.	.
KIAA1543	57662	broad.mit.edu	36	19	7576254	7576255	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020902	exon2	c.291_292insC	p.T97fs	.	.	.
USP19	10869	broad.mit.edu	36	3	49128506	49128507	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199162	exon10	c.1419_1420insG	p.G473fs	.	.	.
FURIN	5045	broad.mit.edu	36	15	89225582	89225583	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002569	exon16	c.1855_1856insC	p.A619fs	.	.	.
PLXNB3	5365	broad.mit.edu	36	X	152684126	152684127	+	De_novo_Start_OutOfFrame	INS	-	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
ZNF277	11179	broad.mit.edu	36	7	111769997	111769997	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021994	exon12	c.A1330G	p.I444V	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121487158	121487158	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002851	exon29	c.C6787T	p.P2263S	.	.	.
FOXK1	221937	broad.mit.edu	36	7	4763160	4763160	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001037165	exon5	c.C1060T	p.R354W	.	.	.
PDYN	5173	broad.mit.edu	36	20	1909096	1909096	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001190892	exon3	c.G638A	p.R213H	.	.	.
SLC24A3	57419	broad.mit.edu	36	20	19613779	19613779	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020689	exon12	c.C1098T	p.N366N	.	.	.
SSTR4	6754	broad.mit.edu	36	20	22964830	22964830	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001052	exon1	c.A710T	p.K237M	.	.	.
NFATC2	4773	broad.mit.edu	36	20	49482110	49482110	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012340	exon9	c.G2623A	p.A875T	.	.	.
NGB	58157	broad.mit.edu	36	14	76805387	76805387	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_021257	exon2	c.T125C	p.F42S	.	.	.
MED15	51586	broad.mit.edu	36	22	19250885	19250885	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003891	exon7	c.G822A	p.P274P	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57742595	57742595	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039886	exon4	c.G82A	p.D28N	.	.	.
ACTL9	284382	broad.mit.edu	36	19	8668881	8668881	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178525	exon1	c.C1171T	p.R391C	.	.	.
SCAF1	58506	broad.mit.edu	36	19	54848516	54848516	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-3883-01	TCGA-AG-3883-01			G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_021228	exon7	c.3058delG	p.G1020fs	.	.	.
RGS22	26166	broad.mit.edu	36	8	101144979	101144979	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015668	exon8	c.C1193T	p.A398V	.	.	.
ZHX2	22882	broad.mit.edu	36	8	124033920	124033920	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014943	exon3	c.G989A	p.R330Q	.	.	.
SCARA5	286133	broad.mit.edu	36	8	27879924	27879924	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173833	exon3	c.C167A	p.S56X	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27977993	27977993	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001010906	exon7	c.G886A	p.D296N	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52449837	52449837	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144651	exon18	c.G3565A	p.G1189S	.	.	.
KCNB2	9312	broad.mit.edu	36	8	73642751	73642751	+	Silent	SNP	G	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004770	exon2	c.G228C	p.V76V	.	.	.
GDF6	392255	broad.mit.edu	36	8	97226074	97226074	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001557	exon2	c.G1261A	p.V421M	.	.	.
NRG1	3084	broad.mit.edu	36	8	32624997	32624998	+	Frame_Shift_Del	DEL	AG	-	-	novel		TCGA-AG-3883-01	TCGA-AG-3883-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013959	exon1	c.219_220del	p.73_74del	.	.	.
MOV10	4343	broad.mit.edu	36	1	113037068	113037068	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020963	exon7	c.G1134A	p.T378T	.	.	.
FLG	2312	broad.mit.edu	36	1	150549578	150549578	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002016	exon3	c.C4408A	p.H1470N	.	.	.
CEP350	9857	broad.mit.edu	36	1	178314326	178314326	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014810	exon29	c.C5873T	p.S1958F	.	.	.
ANGEL2	90806	broad.mit.edu	36	1	211248387	211248387	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144567	exon3	c.G430C	p.E144Q	.	.	.
SPATA17	128153	broad.mit.edu	36	1	215871384	215871384	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138796	exon1	c.T41C	p.V14A	.	.	.
ELAVL4	1996	broad.mit.edu	36	1	50439434	50439434	+	Silent	SNP	C	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144774	exon7	c.C1098A	p.S366S	.	.	.
IFI44L	10964	broad.mit.edu	36	1	78866324	78866324	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006820	exon2	c.C136T	p.R46C	.	.	.
C1orf35	79169	broad.mit.edu	36	1	226355720	226355722	+	In_Frame_Del	DEL	TTC	-	-	novel		TCGA-AG-3883-01	TCGA-AG-3883-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024319	exon7	c.609_611del	p.203_204del	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105129126	105129126	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001077244	exon4	c.T457A	p.C153S	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106768807	106768807	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152434	exon11	c.C1642T	p.L548F	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116837443	116837443	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020693	exon18	c.G3525A	p.P1175P	.	.	.
TMEM25	84866	broad.mit.edu	36	11	117908917	117908917	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001144037	exon4	c.C458T	p.A153V	.	.	.
COPB1	1315	broad.mit.edu	36	11	14472462	14472462	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016451	exon3	c.G191A	p.R64H	.	.	.
SOX6	55553	broad.mit.edu	36	11	15964393	15964393	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033326	exon15	c.C2056T	p.R686W	.	.	.
SOX6	55553	broad.mit.edu	36	11	16164946	16164946	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033326	exon5	c.C667A	p.Q223K	.	.	.
OR4C15	81309	broad.mit.edu	36	11	55078972	55078972	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001001920	exon1	c.G614T	p.G205V	.	.	.
OR8H1	219469	broad.mit.edu	36	11	55814581	55814581	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005199	exon1	c.C534T	p.C178C	.	.	.
OR5A2	219981	broad.mit.edu	36	11	58946702	58946702	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001001954	exon1	c.C301A	p.Q101K	.	.	.
ZP1	22917	broad.mit.edu	36	11	60397304	60397304	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207341	exon7	c.C1206T	p.P402P	.	.	.
DAGLA	747	broad.mit.edu	36	11	61261796	61261796	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006133	exon15	c.G1576A	p.V526I	.	.	.
INTS4	92105	broad.mit.edu	36	11	77290124	77290124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033547	exon18	c.C2219T	p.T740I	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127875807	127875807	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001012279	exon4	c.T1407A	p.N469K	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136629898	136629898	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014739	exon11	c.G2506C	p.D836H	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138649609	138649609	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020340	exon16	c.G2648A	p.R883Q	.	.	.
AGPAT4	56895	broad.mit.edu	36	6	161494398	161494398	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020133	exon5	c.G634A	p.A212T	.	.	.
HIST1H2AG	8969	broad.mit.edu	36	6	27208929	27208929	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021064	exon1	c.C100T	p.L34L	.	.	.
CPNE5	57699	broad.mit.edu	36	6	36822163	36822163	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020939	exon16	c.C1188T	p.H396H	.	.	.
KIF6	221458	broad.mit.edu	36	6	39436263	39436263	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145027	exon18	c.C1968T	p.R656R	.	.	.
SLC22A7	10864	broad.mit.edu	36	6	43379871	43379871	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006672	exon9	c.C1497T	p.I499I	.	.	.
HMGCLL1	54511	broad.mit.edu	36	6	55551795	55551795	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019036	exon1	c.C18T	p.S6S	.	.	.
KCNQ5	56479	broad.mit.edu	36	6	73843880	73843880	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001160133	exon4	c.G731A	p.R244H	KCNQ5,large_intestine,colon,Substitution - Missense,+1	.	.
DDX43	55510	broad.mit.edu	36	6	74180490	74180490	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018665	exon13	c.G1573T	p.D525Y	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75969199	75969199	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004370	exon2	c.C30T	p.A10A	.	.	.
TTK	7272	broad.mit.edu	36	6	80780948	80780948	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001166691	exon10	c.G1034T	p.S345I	.	.	.
FHL5	9457	broad.mit.edu	36	6	97165345	97165345	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001170807	exon5	c.A681T	p.K227N	.	.	.
EXOC7	23265	broad.mit.edu	36	17	71596865	71596865	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145299	exon9	c.G1102A	p.D368N	.	.	.
CYGB	114757	broad.mit.edu	36	17	72039277	72039277	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134268	exon2	c.C235T	p.R79W	.	.	.
NTN1	9423	broad.mit.edu	36	17	9026975	9026975	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004822	exon5	c.C1375A	p.P459T	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21578396	21578396	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004540	exon3	c.C142T	p.P48S	.	.	.
LSS	4047	broad.mit.edu	36	21	46435497	46435497	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145437	exon21	c.C1908T	p.L636L	.	.	.
CDH3	1001	broad.mit.edu	36	16	67236814	67236816	+	In_Frame_Del	DEL	CTC	-	-	novel		TCGA-AG-3883-01	TCGA-AG-3883-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001793	exon1	c.31_33del	p.11_11del	.	.	.
MIB1	57534	broad.mit.edu	36	18	17683195	17683195	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020774	exon17	c.G2434T	p.D812Y	.	.	.
SLC15A2	6565	broad.mit.edu	36	3	123116773	123116773	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145998	exon5	c.C445T	p.R149W	.	.	.
CEP70	80321	broad.mit.edu	36	3	139699618	139699618	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024491	exon17	c.C1677T	p.H559H	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14699606	14699606	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001184958	exon3	c.C16T	p.R6C	.	.	.
GALNTL2	117248	broad.mit.edu	36	3	16191968	16191968	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054110	exon1	c.C306T	p.P102P	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186666272	186666272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004721	exon9	c.C1432T	p.R478W	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39204337	39204337	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_194293	exon2	c.G1604A	p.R535Q	.	.	.
NSUN3	63899	broad.mit.edu	36	3	95285663	95285663	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022072	exon3	c.T145G	p.C49G	.	.	.
OR5H2	79310	broad.mit.edu	36	3	99484864	99484864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005482	exon1	c.G443A	p.R148Q	.	.	.
TAS2R9	50835	broad.mit.edu	36	12	10853490	10853490	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023917	exon1	c.A452G	p.D151G	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128132448	128132448	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_133448	exon7	c.C1732T	p.R578W	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18653747	18653747	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004570	exon30	c.C3976A	p.P1326T	.	.	.
DDX11	1663	broad.mit.edu	36	12	31129189	31129189	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004399	exon5	c.G500C	p.R167T	.	.	.
AMN1	196394	broad.mit.edu	36	12	31733224	31733224	+	Silent	SNP	T	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113402	exon6	c.A687G	p.G229G	.	.	.
KRT82	3888	broad.mit.edu	36	12	51075175	51075175	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033033	exon9	c.G1393A	p.V465I	.	.	.
KIAA0748	9840	broad.mit.edu	36	12	53642687	53642687	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001098815	exon9	c.C1262T	p.T421M	.	.	.
MSRB3	253827	broad.mit.edu	36	12	64008577	64008577	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193461	exon4	c.T190A	p.F64I	.	.	.
NAV3	89795	broad.mit.edu	36	12	76939682	76939682	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014903	exon9	c.C1932T	p.T644T	.	.	.
GJD2	57369	broad.mit.edu	36	15	32832365	32832365	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020660	exon2	c.G572A	p.R191K	.	.	.
FBN1	2200	broad.mit.edu	36	15	46589614	46589614	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000138	exon14	c.C1633T	p.R545C	.	.	.
SLTM	79811	broad.mit.edu	36	15	56973954	56973954	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024755	exon10	c.G1347A	p.E449E	.	.	.
ADAMTS7	11173	broad.mit.edu	36	15	76854154	76854154	+	Silent	SNP	G	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014272	exon12	c.C1743G	p.R581R	.	.	.
ENPEP	2028	broad.mit.edu	36	4	111688841	111688841	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001977	exon14	c.G2061T	p.E687D	.	.	.
FAT4	79633	broad.mit.edu	36	4	126617816	126617816	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024582	exon13	c.C12350A	p.P4117Q	.	.	.
DCLK2	166614	broad.mit.edu	36	4	151338625	151338625	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040260	exon4	c.C881G	p.S294C	.	.	.
SFRP2	6423	broad.mit.edu	36	4	154922236	154922236	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003013	exon3	c.G705A	p.S235S	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155375789	155375789	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017639	exon25	c.C8100T	p.A2700A	.	.	.
IL1RAPL2	26280	broad.mit.edu	36	X	104879719	104879719	+	Silent	SNP	A	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017416	exon9	c.A1159C	p.R387R	.	.	.
MAGEC2	51438	broad.mit.edu	36	X	141119140	141119140	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016249	exon3	c.G300A	p.L100L	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5831678	5831678	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020742	exon5	c.C1041T	p.D347D	.	.	.
DACH2	117154	broad.mit.edu	36	X	85655994	85655994	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_053281	exon3	c.G584A	p.R195H	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91024600	91024600	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032967	exon6	c.G3072T	p.E1024D	.	.	.
EDAR	10913	broad.mit.edu	36	2	108889254	108889254	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022336	exon11	c.T966G	p.I322M	.	.	.
PTPN18	26469	broad.mit.edu	36	2	130845262	130845262	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014369	exon12	c.C945T	p.D315D	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141075606	141075606	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018557	exon42	c.C6872A	p.S2291X	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144874196	144874196	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001171653	exon7	c.G956A	p.R319Q	.	.	.
COBLL1	22837	broad.mit.edu	36	2	165264206	165264206	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014900	exon11	c.G1627C	p.D543H	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166871303	166871303	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002977	exon4	c.A430G	p.T144A	.	.	.
LRP2	4036	broad.mit.edu	36	2	169774347	169774347	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004525	exon38	c.T6331C	p.W2111R	.	.	.
SMARCAL1	50485	broad.mit.edu	36	2	216988190	216988190	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014140	exon3	c.C518A	p.S173Y	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220205337	220205337	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005070	exon8	c.G1070A	p.R357H	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226224431	226224431	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020864	exon6	c.C1868T	p.T623M	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233379475	233379475	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001103148	exon14	c.G1652A	p.W551X	.	.	.
ALLC	55821	broad.mit.edu	36	2	3705409	3705409	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018436	exon5	c.C248T	p.T83M	.	.	.
TET3	200424	broad.mit.edu	36	2	74181949	74181949	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144993	exon9	c.G4121A	p.R1374Q	.	.	.
ASTN2	23245	broad.mit.edu	36	9	119016779	119016779	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014010	exon3	c.C694T	p.R232C	.	.	.
ODF2	4957	broad.mit.edu	36	9	130302306	130302306	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153435	exon21	c.C2633A	p.S878Y	.	.	.
USP20	10868	broad.mit.edu	36	9	131682368	131682368	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001008563	exon25	c.G2740A	p.V914M	.	.	.
PSIP1	11168	broad.mit.edu	36	9	15459306	15459306	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128217	exon12	c.G1062A	p.R354R	.	.	.
VLDLR	7436	broad.mit.edu	36	9	2641465	2641465	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003383	exon16	c.G2302T	p.E768X	.	.	.
FAM75A3	727830	broad.mit.edu	36	9	40691736	40691736	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083124	exon2	c.C216T	p.P72P	.	.	.
ERMP1	79956	broad.mit.edu	36	9	5787837	5787837	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024896	exon13	c.A2366C	p.K789T	.	.	.
TPP2	7174	broad.mit.edu	36	13	102066840	102066840	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003291	exon4	c.G484A	p.G162S	.	.	.
TUBA3C	7278	broad.mit.edu	36	13	18650431	18650431	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006001	exon3	c.C330T	p.I110I	.	.	.
RBM26	64062	broad.mit.edu	36	13	78830500	78830500	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_022118	exon11	c.G1599T	p.K533N	.	.	.
TLX1	3195	broad.mit.edu	36	10	102883943	102883943	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195517	exon2	c.C590T	p.T197M	.	.	.
TACC2	10579	broad.mit.edu	36	10	123836499	123836499	+	Silent	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206862	exon4	c.G4494T	p.L1498L	.	.	.
ADAM12	8038	broad.mit.edu	36	10	127814192	127814192	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_021641	exon5	c.C376T	p.R126W	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128104631	128104631	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004298	exon8	c.G1980A	p.P660P	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26281168	26281168	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017433	exon3	c.G123T	p.K41N	.	.	.
JMJD1C	221037	broad.mit.edu	36	10	64643559	64643559	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004241	exon5	c.C1717T	p.H573Y	.	.	.
APC	324	broad.mit.edu	36	5	112179103	112179103	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon7	c.C793T	p.R265X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
AQPEP	206338	broad.mit.edu	36	5	115326688	115326688	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173800	exon1	c.C475T	p.R159W	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140532694	140532694	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018940	exon1	c.C94T	p.R32W	.	.	.
CDH10	1008	broad.mit.edu	36	5	24573388	24573388	+	Silent	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006727	exon3	c.C384T	p.R128R	.	.	.
NUP155	9631	broad.mit.edu	36	5	37343254	37343254	+	Silent	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153485	exon25	c.G2805A	p.T935T	.	.	.
VCAN	1462	broad.mit.edu	36	5	82869931	82869931	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001164097	exon7	c.G2392T	p.E798X	.	.	.