Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
AKR1D1	6718	hgsc.bcm.edu	36	7	137442792	137442792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001190906	exon6	c.C658T	p.R220C	.	.	.
TRPV5	56302	hgsc.bcm.edu	36	7	142337343	142337343	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019841	exon3	c.C281A	p.A94E	.	.	.
SMARCD3	6604	hgsc.bcm.edu	36	7	150567143	150567143	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003078	exon14	c.G1392A	p.S464S	.	.	.
PDE1C	5137	hgsc.bcm.edu	36	7	31856811	31856811	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001191056	exon8	c.G820A	p.G274R	.	.	.
SPAG4L	140732	hgsc.bcm.edu	36	20	31054061	31054061	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080675	exon3	c.A204T	p.G68G	.	.	.
KCNB1	3745	hgsc.bcm.edu	36	20	47423799	47423799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004975	exon2	c.G1705A	p.V569I	.	.	.
KCNQ2	3785	hgsc.bcm.edu	36	20	61515323	61515323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_172107	exon15	c.G1687A	p.D563N	.	.	.
ZNF146	7705	hgsc.bcm.edu	36	19	41419903	41419903	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001099639	exon3	c.G721T	p.G241C	.	.	.
MRPS12	6183	hgsc.bcm.edu	36	19	44114964	44114964	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021107	exon2	c.C201A	p.T67T	.	.	.
RPS16	6217	hgsc.bcm.edu	36	19	44616186	44616186	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001020	exon3	c.G206T	p.R69L	.	.	.
FCAR	2204	hgsc.bcm.edu	36	19	60088492	60088492	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002000	exon3	c.C104T	p.S35L	.	.	.
ZNF667	63934	hgsc.bcm.edu	36	19	61644819	61644819	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022103	exon5	c.G1357A	p.G453S	.	.	.
UBR5	51366	hgsc.bcm.edu	36	8	103410786	103410786	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015902	exon10	c.C1116T	p.I372I	.	.	.
SAMD12	401474	hgsc.bcm.edu	36	8	119461059	119461059	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001101676	exon4	c.C384T	p.N128N	.	.	.
STC1	6781	hgsc.bcm.edu	36	8	23758471	23758471	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003155	exon4	c.G501A	p.L167L	.	.	.
ADAM7	8756	hgsc.bcm.edu	36	8	24414955	24414955	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003817	exon20	c.C2184A	p.I728I	.	.	.
EXTL3	2137	hgsc.bcm.edu	36	8	28629729	28629729	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001440	exon3	c.C234T	p.H78H	.	.	.
ZNF648	127665	hgsc.bcm.edu	36	1	180293660	180293660	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001009992	exon2	c.G109A	p.D37N	.	.	.
UBR4	23352	hgsc.bcm.edu	36	1	19361528	19361528	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020765	exon35	c.A4929G	p.E1643E	.	.	.
OR2T10	127069	hgsc.bcm.edu	36	1	246823501	246823501	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004693	exon1	c.C192A	p.N64K	.	.	.
MCOLN3	55283	hgsc.bcm.edu	36	1	85271171	85271171	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018298	exon5	c.A607C	p.K203Q	.	.	.
DPYD	1806	hgsc.bcm.edu	36	1	97959710	97959710	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001160301	exon5	c.T427G	p.Y143D	.	.	.
OR4C11	219429	hgsc.bcm.edu	36	11	55128092	55128092	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004700	exon1	c.G334T	p.V112F	.	.	.
ASCC3	10973	hgsc.bcm.edu	36	6	101217063	101217063	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006828	exon15	c.T2357A	p.M786K	.	.	.
AIM1	202	hgsc.bcm.edu	36	6	107074966	107074966	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001624	exon2	c.G1966A	p.G656R	.	.	.
ROS1	6098	hgsc.bcm.edu	36	6	117822078	117822078	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002944	exon10	c.A1104T	p.L368F	.	.	.
SLC17A4	10050	hgsc.bcm.edu	36	6	25885122	25885122	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005495	exon10	c.C1224A	p.F408L	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	69723264	69723264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001704	exon8	c.G1367A	p.G456D	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518234	7518234	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.G772T	p.E258X	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7643250	7643250	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020877	exon55	c.C8664T	p.I2888I	.	.	.
SLFN12	55106	hgsc.bcm.edu	36	17	30762527	30762527	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018042	exon4	c.A1680G	p.I560M	.	.	.
GRIN2A	2903	hgsc.bcm.edu	36	16	9765710	9765710	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134408	exon13	c.G3192A	p.T1064T	.	.	.
SERPINB5	5268	hgsc.bcm.edu	36	18	59317395	59317395	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002639	exon6	c.C630A	p.D210E	.	.	.
SERPINB5	5268	hgsc.bcm.edu	36	18	59317410	59317410	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002639	exon6	c.G645C	p.K215N	.	.	.
BOC	91653	hgsc.bcm.edu	36	3	114474112	114474112	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033254	exon7	c.G833A	p.R278H	.	.	.
TMEM108	66000	hgsc.bcm.edu	36	3	134581456	134581456	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001136469	exon4	c.G211T	p.D71Y	.	.	.
TTC14	151613	hgsc.bcm.edu	36	3	181805071	181805071	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133462	exon5	c.A683T	p.E228V	.	.	.
GPN3	51184	hgsc.bcm.edu	36	12	109381907	109381907	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016301	exon3	c.G301A	p.D101N	.	.	.
VDR	7421	hgsc.bcm.edu	36	12	46524977	46524977	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000376	exon10	c.G1103A	p.R368H	.	.	.
CLECL1	160365	hgsc.bcm.edu	36	12	9766664	9766664	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_172004	exon2	c.T329C	p.F110S	.	.	.
UBR1	197131	hgsc.bcm.edu	36	15	41082097	41082097	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_174916	exon32	c.C3607G	p.L1203V	.	.	.
TRIML2	205860	hgsc.bcm.edu	36	4	189249809	189249809	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173553	exon7	c.G876A	p.T292T	.	.	.
STIM2	57620	hgsc.bcm.edu	36	4	26628459	26628459	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001169117	exon11	c.A1518C	p.L506F	.	.	.
CPZ	8532	hgsc.bcm.edu	36	4	8659403	8659403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003652	exon5	c.G913A	p.A305T	.	.	.
GPR112	139378	hgsc.bcm.edu	36	X	135259412	135259412	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153834	exon6	c.T5881C	p.L1961L	.	.	.
MCF2	4168	hgsc.bcm.edu	36	X	138529504	138529504	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001099855	exon10	c.A895C	p.N299H	.	.	.
CXorf22	170063	hgsc.bcm.edu	36	X	35895782	35895782	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152632	exon10	c.T1726C	p.C576R	.	.	.
NLGN4X	57502	hgsc.bcm.edu	36	X	5831193	5831193	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020742	exon5	c.G1526T	p.S509I	.	.	.
FAM47A	158724	hgsc.bcm.edu	36	X	34058857	34058857	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_203408	exon1	c.G1460A	p.R487Q	.	.	.
OSBPL6	114880	hgsc.bcm.edu	36	2	178945130	178945130	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032523	exon14	c.G1319T	p.R440L	.	.	.
TFPI	7035	hgsc.bcm.edu	36	2	188051727	188051727	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001032281	exon7	c.A677T	p.Y226F	.	.	.
PIKFYVE	200576	hgsc.bcm.edu	36	2	208898671	208898671	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015040	exon20	c.C2891T	p.P964L	.	.	.
MAP2	4133	hgsc.bcm.edu	36	2	210267394	210267394	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002374	exon7	c.C2255T	p.A752V	.	.	.
DYSF	8291	hgsc.bcm.edu	36	2	71750342	71750342	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001130982	exon51	c.C5721T	p.F1907F	.	.	.
GOLGA2	2801	hgsc.bcm.edu	36	9	130070559	130070559	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004486	exon3	c.T273G	p.P91P	.	.	.
OLFM1	10439	hgsc.bcm.edu	36	9	137151589	137151589	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014279	exon6	c.G1148C	p.S383T	.	.	.
PTPDC1	138639	hgsc.bcm.edu	36	9	95899502	95899502	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152422	exon6	c.G827T	p.R276L	.	.	.
SOHLH2	54937	hgsc.bcm.edu	36	13	35642713	35642713	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017826	exon10	c.C1212T	p.C404C	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38163931	38163931	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_207361	exon1	c.C4450T	p.Q1484X	.	.	.
RNF219	79596	hgsc.bcm.edu	36	13	78111139	78111139	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024546	exon4	c.G369T	p.Q123H	.	.	.
ABCC2	1244	hgsc.bcm.edu	36	10	101557917	101557917	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000392	exon13	c.T1756A	p.F586I	.	.	.
RSU1	6251	hgsc.bcm.edu	36	10	16836937	16836937	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152724	exon4	c.T180A	p.V60V	.	.	.
CUBN	8029	hgsc.bcm.edu	36	10	17032031	17032031	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001081	exon34	c.C5055T	p.G1685G	.	.	.
RASSF4	83937	hgsc.bcm.edu	36	10	44805165	44805165	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032023	exon8	c.C675T	p.H225H	.	.	.
SFTPD	6441	hgsc.bcm.edu	36	10	81696245	81696245	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003019	exon2	c.G151A	p.D51N	.	.	.
KIF11	3832	hgsc.bcm.edu	36	10	94343154	94343154	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004523	exon1	c.G42A	p.E14E	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203406	112203406	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C4162T	p.Q1388X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150910516	150910516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001447	exon7	c.G4406A	p.R1469Q	.	.	.
ADAM19	8728	hgsc.bcm.edu	36	5	156851237	156851237	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033274	exon18	c.G2059A	p.G687R	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38521817	38521817	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127671	exon17	c.G2358C	p.K786N	.	.	.
C6	729	hgsc.bcm.edu	36	5	41195102	41195102	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000065	exon12	c.C1695T	p.D565D	.	.	.
ANKRD34B	340120	hgsc.bcm.edu	36	5	79890775	79890775	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004441	exon5	c.G820C	p.E274Q	.	.	.
HTN3	3347	hgsc.bcm.edu	36	4	70931099	70931099	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	.	.	.	.	.	.	.