Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target CUL1 8454 hgsc.bcm.edu 36 7 148082047 148082047 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_003592 exon3 c.C187T p.R63X . . . PKD1L1 168507 hgsc.bcm.edu 36 7 47845683 47845683 + Silent SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_138295 exon36 c.G5655A p.L1885L . . . CDH22 64405 hgsc.bcm.edu 36 20 44303275 44303275 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_021248 exon2 c.G284A p.G95E . . . CSE1L 1434 hgsc.bcm.edu 36 20 47144892 47144892 + Silent SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001316 exon24 c.C2811T p.T937T . . . ZNFX1 57169 hgsc.bcm.edu 36 20 47299374 47299374 + Silent SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_021035 exon14 c.G3594A p.S1198S . . . MYT1 4661 hgsc.bcm.edu 36 20 62313092 62313092 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004535 exon8 c.C1381T p.R461C . . . MSR1 4481 hgsc.bcm.edu 36 8 16070656 16070656 + Silent SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_138716 exon4 c.C312T p.S104S . . . ATP6V0D2 245972 hgsc.bcm.edu 36 8 87222870 87222870 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_152565 exon4 c.A557G p.Y186C . . . FLG 2312 hgsc.bcm.edu 36 1 150552906 150552906 + Silent SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_002016 exon3 c.C1080T p.H360H . . . TARBP1 6894 hgsc.bcm.edu 36 1 232594035 232594035 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_005646 exon30 c.C4777T p.R1593C . . . SLC6A9 6536 hgsc.bcm.edu 36 1 44235835 44235835 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_201649 exon14 c.G2090A p.G697D . . . PGM1 5236 hgsc.bcm.edu 36 1 63892634 63892634 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001172818 exon10 c.G1562A p.R521Q . . . SLC5A12 159963 hgsc.bcm.edu 36 11 26699608 26699608 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_178498 exon1 c.T230G p.F77C . . . TMEM14C 51522 hgsc.bcm.edu 36 6 10838838 10838838 + Silent SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_016462 exon6 c.C292T p.L98L . . . PEX3 8504 hgsc.bcm.edu 36 6 143848071 143848071 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_003630 exon11 c.T1031C p.F344S . . . SOD2 6648 hgsc.bcm.edu 36 6 160025973 160025973 + Silent SNP G G T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001024466 exon3 c.C309A p.V103V . . . ME1 4199 hgsc.bcm.edu 36 6 84081818 84081818 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_002395 exon6 c.C634T p.R212W . . . MAP2K3 5606 hgsc.bcm.edu 36 17 21144780 21144780 + Missense_Mutation SNP G G T rs56067280 unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_002756 exon5 c.G194T p.R65L . . . KIF2B 84643 hgsc.bcm.edu 36 17 49256475 49256475 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_032559 exon1 c.G1082A p.G361E . . . TP53 7157 hgsc.bcm.edu 36 17 7519200 7519200 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001126114 exon5 c.C455G p.P152R TP53,thyroid,NS,Substitution - Missense,0 . . UQCRC2 7385 hgsc.bcm.edu 36 16 21881632 21881632 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_003366 exon6 c.C439T p.R147C . . . RANBP10 57610 hgsc.bcm.edu 36 16 66326440 66326440 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_020850 exon6 c.C598T p.L200F . . . CDH2 1000 hgsc.bcm.edu 36 18 23827479 23827479 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001792 exon8 c.G1141A p.E381K . . . DTNA 1837 hgsc.bcm.edu 36 18 30713671 30713671 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001198938 exon18 c.C1891T p.R631C . . . SLC9A9 285195 hgsc.bcm.edu 36 3 144775629 144775629 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_173653 exon8 c.G991A p.G331S . . . PLXNB1 5364 hgsc.bcm.edu 36 3 48440396 48440396 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_002673 exon3 c.G629A p.R210H . . . KRAS 3845 hgsc.bcm.edu 36 12 25269828 25269828 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004985 exon4 c.C437T p.A146V KRAS,large_intestine,NS,Substitution - Missense,-1 . . MAP3K12 7786 hgsc.bcm.edu 36 12 52163995 52163995 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001193511 exon8 c.A1325G p.E442G MAP3K12,breast,NS,Substitution - Missense,-1 . . TMTC3 160418 hgsc.bcm.edu 36 12 87066234 87066234 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_181783 exon2 c.T11C p.I4T . . . ATP10A 57194 hgsc.bcm.edu 36 15 23479609 23479609 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_024490 exon17 c.G3409A p.V1137M . . . PPP3CA 5530 hgsc.bcm.edu 36 4 102166131 102166131 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001130691 exon13 c.G1450A p.A484T . . . GSTCD 79807 hgsc.bcm.edu 36 4 106963597 106963597 + Silent SNP A A G novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_024751 exon6 c.A1017G p.Q339Q . . . CTSO 1519 hgsc.bcm.edu 36 4 157069006 157069006 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001334 exon7 c.G863A p.R288Q . . . AMOT 154796 hgsc.bcm.edu 36 X 111909460 111909460 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G A A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_133265 exon11 c.C1351T p.R451X . . . ZNF645 158506 hgsc.bcm.edu 36 X 22201989 22201989 + Silent SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C T T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_152577 exon1 c.C960T p.Y320Y . . . SRPX 8406 hgsc.bcm.edu 36 X 37894044 37894044 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_006307 exon10 c.A1259G p.D420G . . . OPHN1 4983 hgsc.bcm.edu 36 X 67200445 67200445 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G A A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_002547 exon21 c.C2134T p.R712W . . . FAM49A 81553 hgsc.bcm.edu 36 2 16597698 16597698 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_030797 exon12 c.C959A p.A320E . . . SLC25A12 8604 hgsc.bcm.edu 36 2 172350094 172350094 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_003705 exon18 c.C1973T p.P658L . . . SLC30A3 7781 hgsc.bcm.edu 36 2 27333169 27333169 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_003459 exon6 c.C874T p.L292F . . . SPDYA 245711 hgsc.bcm.edu 36 2 28898735 28898735 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_182756 exon5 c.A335C p.K112T . . . COL5A1 1289 hgsc.bcm.edu 36 9 136731576 136731576 + Missense_Mutation SNP C C T rs41306397 unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_000093 exon3 c.C278T p.A93V . . . FRMPD1 22844 hgsc.bcm.edu 36 9 37730790 37730790 + Silent SNP C C G novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_014907 exon15 c.C2265G p.A755A . . . PTCH1 5727 hgsc.bcm.edu 36 9 97271088 97271088 + Silent SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001083605 exon14 c.G1563A p.T521T . . . NALCN 259232 hgsc.bcm.edu 36 13 100560985 100560985 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_052867 exon20 c.A2350G p.T784A . . . TMCO3 55002 hgsc.bcm.edu 36 13 113241726 113241726 + Silent SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_017905 exon10 c.G1593A p.A531A . . . GPC5 2262 hgsc.bcm.edu 36 13 91178836 91178836 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004466 exon4 c.G1070A p.R357H . . . TDRD1 56165 hgsc.bcm.edu 36 10 115937726 115937726 + Missense_Mutation SNP A A C novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_198795 exon2 c.A146C p.N49T . . . BEND7 222389 hgsc.bcm.edu 36 10 13582073 13582073 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_152751 exon3 c.G3A p.M1I . . . APC 324 hgsc.bcm.edu 36 5 112192524 112192524 + Nonsense_Mutation SNP G G T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001127511 exon12 c.G1645T p.G549X . . . NDST1 3340 hgsc.bcm.edu 36 5 149908035 149908035 + Silent SNP C C T novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001543 exon12 c.C2208T p.A736A . . . CDH9 1007 hgsc.bcm.edu 36 5 26921868 26921868 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_016279 exon10 c.A1594T p.T532S . . . RAI14 26064 hgsc.bcm.edu 36 5 34860119 34860119 + Silent SNP G G A novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001145522 exon14 c.G2328A p.S776S . . . AMY1B 277 hgsc.bcm.edu 36 1 104037558 104037558 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3611-01A-01W-0833-10 TCGA-AG-3611-10A-01W-0833-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID . . . . . . .