Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CASS4	57091	hgsc.bcm.edu	36	20	54445847	54445847	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020356	exon2	c.G257T	p.G86V	.	.	.
CTSG	1511	hgsc.bcm.edu	36	14	24114447	24114447	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001911	exon2	c.G67A	p.G23R	.	.	.
G2E3	55632	hgsc.bcm.edu	36	14	30151251	30151251	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017769	exon13	c.A1588C	p.I530L	.	.	.
TUBA8	51807	hgsc.bcm.edu	36	22	16989377	16989377	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001193414	exon4	c.A434C	p.D145A	.	.	.
PNPLA5	150379	hgsc.bcm.edu	36	22	42617057	42617057	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138814	exon3	c.C447A	p.Y149X	.	.	.
HNRNPL	3191	hgsc.bcm.edu	36	19	44021039	44021039	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005335	exon10	c.C996T	p.Y332Y	.	.	.
SPAG1	6674	hgsc.bcm.edu	36	8	101321877	101321877	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003114	exon18	c.A2351C	p.K784T	.	.	.
SFRP1	6422	hgsc.bcm.edu	36	8	41241849	41241849	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003012	exon3	c.T939G	p.F313L	.	.	.
ZNF703	80139	hgsc.bcm.edu	36	8	37675300	37675300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025069	exon2	c.G1723A	p.A575T	.	.	.
TSPAN2	10100	hgsc.bcm.edu	36	1	115397547	115397547	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005725	exon7	c.C576T	p.V192V	.	.	.
KLHL20	27252	hgsc.bcm.edu	36	1	172010188	172010188	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014458	exon9	c.C1417G	p.P473A	.	.	.
PRG4	10216	hgsc.bcm.edu	36	1	184542178	184542178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127709	exon5	c.C425T	p.T142I	.	.	.
UBR4	23352	hgsc.bcm.edu	36	1	19383199	19383199	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020765	exon16	c.C1996T	p.R666W	.	.	.
C4BPA	722	hgsc.bcm.edu	36	1	205371655	205371655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000715	exon8	c.C1031T	p.T344M	.	.	.
RCOR3	55758	hgsc.bcm.edu	36	1	209519235	209519235	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001136223	exon7	c.A674G	p.D225G	.	.	.
TP53BP2	7159	hgsc.bcm.edu	36	1	222043407	222043407	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001031685	exon16	c.G3089T	p.S1030I	.	.	.
KIAA1804	84451	hgsc.bcm.edu	36	1	231556279	231556279	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032435	exon3	c.C1090G	p.P364A	.	.	.
SLC2A1	6513	hgsc.bcm.edu	36	1	43169081	43169081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006516	exon4	c.G319A	p.A107T	.	.	.
BEND5	79656	hgsc.bcm.edu	36	1	48974524	48974524	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024603	exon5	c.C1082T	p.S361L	.	.	.
SMPD1	6609	hgsc.bcm.edu	36	11	6369957	6369957	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007593	exon2	c.C1083T	p.T361T	.	.	.
NUDT22	84304	hgsc.bcm.edu	36	11	63751654	63751654	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128612	exon3	c.C519G	p.L173L	.	.	.
PSMB8	5696	hgsc.bcm.edu	36	6	32919679	32919679	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_148919	exon1	c.G73T	p.G25W	.	.	.
GLP1R	2740	hgsc.bcm.edu	36	6	39142005	39142005	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002062	exon5	c.G457A	p.A153T	.	.	.
OGFRL1	79627	hgsc.bcm.edu	36	6	72063205	72063205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024576	exon6	c.C656T	p.A219V	.	.	.
HTR1B	3351	hgsc.bcm.edu	36	6	78229737	78229737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000863	exon1	c.G103A	p.A35T	.	.	.
BACH2	60468	hgsc.bcm.edu	36	6	90717543	90717543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021813	exon7	c.G1003A	p.V335M	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.
MYH1	4619	hgsc.bcm.edu	36	17	10349871	10349871	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005963	exon19	c.T2157C	p.Y719Y	.	.	.
SEZ6L2	26470	hgsc.bcm.edu	36	16	29798707	29798707	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001114100	exon7	c.G1210A	p.D404N	.	.	.
GRIN2A	2903	hgsc.bcm.edu	36	16	9765837	9765837	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001134408	exon13	c.G3065A	p.R1022H	.	.	.
ZNF532	55205	hgsc.bcm.edu	36	18	54736919	54736919	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018181	exon4	c.C420T	p.D140D	.	.	.
TSEN2	80746	hgsc.bcm.edu	36	3	12506461	12506461	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025265	exon2	c.G162A	p.A54A	.	.	.
RUVBL1	8607	hgsc.bcm.edu	36	3	129302135	129302135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003707	exon6	c.G746A	p.R249Q	.	.	.
ATP2C1	27032	hgsc.bcm.edu	36	3	132198315	132198315	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001199183	exon23	c.G2180A	p.G727E	.	.	.
TMEM108	66000	hgsc.bcm.edu	36	3	134581591	134581591	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136469	exon4	c.G346T	p.G116W	.	.	.
P2RY14	9934	hgsc.bcm.edu	36	3	152414130	152414130	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014879	exon3	c.G665A	p.R222Q	.	.	.
ZMAT3	64393	hgsc.bcm.edu	36	3	180225535	180225535	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152240	exon7	c.G831A	p.R277R	.	.	.
ZMAT3	64393	hgsc.bcm.edu	36	3	180228159	180228159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152240	exon5	c.C526T	p.R176W	.	.	.
C3orf67	200844	hgsc.bcm.edu	36	3	58828643	58828643	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198463	exon10	c.A700G	p.N234D	.	.	.
ADAMTS9	56999	hgsc.bcm.edu	36	3	64564794	64564794	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182920	exon25	c.T3591A	p.T1197T	.	.	.
CPOX	1371	hgsc.bcm.edu	36	3	99790370	99790370	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000097	exon4	c.T830A	p.F277Y	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35C	p.G12A	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
RNF41	10193	hgsc.bcm.edu	36	12	54890398	54890398	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005785	exon4	c.C312T	p.S104S	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155375938	155375938	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017639	exon25	c.G7951A	p.E2651K	.	.	.
PPEF1	5475	hgsc.bcm.edu	36	X	18677856	18677856	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152226	exon7	c.C261A	p.S87R	.	.	.
CXorf22	170063	hgsc.bcm.edu	36	X	35894665	35894665	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152632	exon9	c.G1473C	p.E491D	.	.	.
TTL	150465	hgsc.bcm.edu	36	2	113002742	113002742	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153712	exon7	c.G1033T	p.E345X	.	.	.
SLC20A1	6574	hgsc.bcm.edu	36	2	113133040	113133040	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005415	exon7	c.A946G	p.T316A	.	.	.
GPR39	2863	hgsc.bcm.edu	36	2	132891196	132891196	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001508	exon1	c.C111T	p.Y37Y	.	.	.
NDUFS1	4719	hgsc.bcm.edu	36	2	206717911	206717911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005006	exon9	c.G822T	p.L274F	.	.	.
SPAG16	79582	hgsc.bcm.edu	36	2	214983230	214983230	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024532	exon16	c.C1842T	p.D614D	.	.	.
SLC8A1	6546	hgsc.bcm.edu	36	2	40220278	40220278	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001112800	exon8	c.C2297G	p.P766R	.	.	.
EGR4	1961	hgsc.bcm.edu	36	2	73372378	73372378	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001965	exon2	c.G1485A	p.A495A	.	.	.
CNGA3	1261	hgsc.bcm.edu	36	2	98363076	98363076	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001298	exon4	c.G222A	p.S74S	.	.	.
GAL3ST2	64090	hgsc.bcm.edu	36	2	242389946	242389946	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022134	exon3	c.C197T	p.T66M	.	.	.
TGFBR1	7046	hgsc.bcm.edu	36	9	100931133	100931133	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004612	exon2	c.A273C	p.K91N	.	.	.
ZNF462	58499	hgsc.bcm.edu	36	9	108729794	108729794	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021224	exon3	c.G3780A	p.T1260T	.	.	.
STXBP1	6812	hgsc.bcm.edu	36	9	129486468	129486468	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003165	exon19	c.G1703T	p.G568V	.	.	.
TRPM3	80036	hgsc.bcm.edu	36	9	72588909	72588909	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007471	exon7	c.T1080C	p.V360V	.	.	.
FNDC3A	22862	hgsc.bcm.edu	36	13	48640764	48640764	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001079673	exon10	c.A1052T	p.Y351F	.	.	.
KLF5	688	hgsc.bcm.edu	36	13	72534463	72534463	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001730	exon2	c.C725G	p.S242C	.	.	.
CLDN10	9071	hgsc.bcm.edu	36	13	94884261	94884261	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182848	exon1	c.C173A	p.S58Y	.	.	.
APBB1IP	54518	hgsc.bcm.edu	36	10	26829864	26829864	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019043	exon5	c.C271A	p.Q91K	.	.	.
FAS	355	hgsc.bcm.edu	36	10	90760520	90760520	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000043	exon6	c.T536A	p.L179H	.	.	.
APC	324	hgsc.bcm.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	C	T	rs62619935	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127510	exon8	c.C646T	p.R216X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112156090	112156090	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127510	exon8	c.C694T	p.R232X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
TCF7	6932	hgsc.bcm.edu	36	5	133506629	133506629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003202	exon8	c.C965T	p.A322V	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13975251	13975251	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001369	exon5	c.G625A	p.V209I	.	.	.
POU4F3	5459	hgsc.bcm.edu	36	5	145699798	145699798	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002700	exon2	c.G615T	p.Q205H	.	.	.
NMUR2	56923	hgsc.bcm.edu	36	5	151764408	151764408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020167	exon1	c.G460A	p.A154T	.	.	.
ERGIC1	57222	hgsc.bcm.edu	36	5	172274375	172274375	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001031711	exon5	c.C303T	p.I101I	.	.	.
ADAMTS2	9509	hgsc.bcm.edu	36	5	178511854	178511854	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021599	exon10	c.C1524T	p.T508T	.	.	.
RASGEF1C	255426	hgsc.bcm.edu	36	5	179478261	179478261	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_175062	exon10	c.G1037A	p.R346H	.	.	.
PDZD2	23037	hgsc.bcm.edu	36	5	32109808	32109808	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178140	exon17	c.G2839A	p.G947R	.	.	.
IRX1	79192	hgsc.bcm.edu	36	5	3653194	3653194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024337	exon2	c.G1132A	p.A378T	.	.	.