Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ARID1A	8289	hgsc.bcm.edu	36	1	26978157	26978158	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_139135	exon20	c.4530_4531insT	p.I1510fs	.	.	.
TAX1BP1	8887	hgsc.bcm.edu	36	7	27834886	27834886	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006024	exon17	c.C2283T	p.S761S	.	.	.
IGFBP3	3486	hgsc.bcm.edu	36	7	45923492	45923492	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000598	exon2	c.C475T	p.R159W	.	.	.
RAE1	8480	hgsc.bcm.edu	36	20	55382038	55382038	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003610	exon9	c.C743T	p.P248L	.	.	.
TCF20	6942	hgsc.bcm.edu	36	22	40936090	40936090	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005650	exon1	c.A5166C	p.G1722G	.	.	.
BLVRB	645	hgsc.bcm.edu	36	19	45649174	45649174	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000713	exon4	c.C400T	p.R134W	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113346868	113346868	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon60	c.C9636A	p.I3212I	.	.	.
CSGALNACT1	55790	hgsc.bcm.edu	36	8	19407509	19407509	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018371	exon4	c.C117T	p.D39D	.	.	.
IVL	3713	hgsc.bcm.edu	36	1	151148952	151148952	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005547	exon2	c.C55A	p.L19I	.	.	.
OR6Y1	391112	hgsc.bcm.edu	36	1	156783766	156783766	+	Missense_Mutation	SNP	C	C	T	rs41273491	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005189	exon1	c.G754A	p.V252I	.	.	.
NME7	29922	hgsc.bcm.edu	36	1	167545899	167545899	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_197972	exon4	c.G214T	p.E72X	.	.	.
ZNF202	7753	hgsc.bcm.edu	36	11	123106656	123106656	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003455	exon4	c.C151T	p.R51C	.	.	.
OPCML	4978	hgsc.bcm.edu	36	11	131811331	131811331	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001012393	exon7	c.G775T	p.G259C	.	.	.
NR2E1	7101	hgsc.bcm.edu	36	6	108609525	108609525	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003269	exon8	c.G972A	p.T324T	.	.	.
AGPAT1	10554	hgsc.bcm.edu	36	6	32245778	32245778	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032741	exon6	c.A622G	p.I208V	.	.	.
MAPK13	5603	hgsc.bcm.edu	36	6	36211792	36211792	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002754	exon5	c.G436A	p.V146I	.	.	.
TFAP2D	83741	hgsc.bcm.edu	36	6	50791067	50791067	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_172238	exon2	c.C319T	p.H107Y	.	.	.
DNAH9	1770	hgsc.bcm.edu	36	17	11596967	11596967	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001372	exon33	c.A6703T	p.I2235F	.	.	.
TRPV2	51393	hgsc.bcm.edu	36	17	16270862	16270862	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016113	exon7	c.G1197T	p.L399L	.	.	.
ACACA	31	hgsc.bcm.edu	36	17	32560445	32560445	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198834	exon47	c.C5903T	p.P1968L	.	.	.
AMZ2	51321	hgsc.bcm.edu	36	17	63762258	63762258	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033570	exon6	c.T705C	p.Y235Y	.	.	.
ETS2	2114	hgsc.bcm.edu	36	21	39116583	39116583	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005239	exon10	c.G1310A	p.R437H	.	.	.
ATP2B2	491	hgsc.bcm.edu	36	3	10345566	10345566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001683	exon20	c.G3529A	p.D1177N	.	.	.
GLT8D1	55830	hgsc.bcm.edu	36	3	52703966	52703966	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001010983	exon11	c.A1051T	p.I351F	.	.	.
LIMA1	51474	hgsc.bcm.edu	36	12	48880911	48880911	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001113546	exon7	c.C888T	p.G296G	.	.	.
WNK1	65125	hgsc.bcm.edu	36	12	888210	888210	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184985	exon28	c.G7920A	p.R2640R	.	.	.
ZBTB39	9880	hgsc.bcm.edu	36	12	55683309	55683309	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014830	exon2	c.C1660T	p.R554C	.	.	.
LACTB	114294	hgsc.bcm.edu	36	15	61220563	61220563	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032857	exon6	c.G1150T	p.V384F	.	.	.
SH3TC1	54436	hgsc.bcm.edu	36	4	8286113	8286113	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_018986	exon14	c.G3255C	p.Q1085H	.	.	.
GAK	2580	hgsc.bcm.edu	36	4	834781	834781	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005255	exon26	c.C3600T	p.T1200T	.	.	.
ZMAT1	84460	hgsc.bcm.edu	36	X	101025301	101025301	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001011657	exon7	c.G1754T	p.R585I	.	.	.
GRIA3	2892	hgsc.bcm.edu	36	X	122366321	122366321	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007325	exon10	c.G1375T	p.A459S	.	.	.
MAGEC2	51438	hgsc.bcm.edu	36	X	141119132	141119132	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016249	exon3	c.G308T	p.C103F	.	.	.
FAM47B	170062	hgsc.bcm.edu	36	X	34871504	34871504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152631	exon1	c.G635A	p.R212H	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141533077	141533077	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018557	exon9	c.G1253T	p.G418V	.	.	.
SCN2A	6326	hgsc.bcm.edu	36	2	165932032	165932032	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040143	exon18	c.T3580C	p.W1194R	.	.	.
NDUFS1	4719	hgsc.bcm.edu	36	2	206705965	206705965	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005006	exon14	c.G1502A	p.R501Q	.	.	.
CNRIP1	25927	hgsc.bcm.edu	36	2	68399930	68399930	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015463	exon1	c.G107A	p.R36H	.	.	.
MYO16	23026	hgsc.bcm.edu	36	13	108243886	108243886	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001198950	exon6	c.G638A	p.R213H	.	.	.
RNF6	6049	hgsc.bcm.edu	36	13	25686610	25686610	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005977	exon5	c.A1409G	p.N470S	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38162109	38162109	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_207361	exon1	c.C2628T	p.H876H	.	.	.
PCDHA8	56140	hgsc.bcm.edu	36	5	140201561	140201561	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031856	exon1	c.G471A	p.A157A	.	.	.
PPP2R2B	5521	hgsc.bcm.edu	36	5	145960204	145960204	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127381	exon8	c.C803T	p.P268L	.	.	.
RASA1	5921	hgsc.bcm.edu	36	5	86664864	86664864	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002890	exon4	c.C853T	p.R285X	.	.	.