Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TCF7L2	6934	hgsc.bcm.edu	36	10	114891039	114891040	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001198528	exon5	c.590_591insA	p.L197fs	.	.	.
TAS2R5	54429	hgsc.bcm.edu	36	7	141136866	141136866	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018980	exon1	c.G236A	p.R79H	.	.	.
C14orf106	55320	hgsc.bcm.edu	36	14	44763354	44763354	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018353	exon11	c.C2186T	p.S729F	.	.	.
SOS2	6655	hgsc.bcm.edu	36	14	49736245	49736245	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_006939	exon4	c.T424A	p.L142I	.	.	.
HMGXB4	10042	hgsc.bcm.edu	36	22	33991430	33991430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001003681	exon5	c.C1049T	p.A350V	.	.	.
MFHAS1	9258	hgsc.bcm.edu	36	8	8785042	8785042	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004225	exon1	c.C2937G	p.T979T	.	.	.
C4BPA	722	hgsc.bcm.edu	36	1	205354107	205354107	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000715	exon3	c.C182T	p.P61L	.	.	.
RPE65	6121	hgsc.bcm.edu	36	1	68683146	68683146	+	Missense_Mutation	SNP	C	C	T	rs61752870	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000329	exon4	c.G254A	p.R85H	.	.	.
DPYD	1806	hgsc.bcm.edu	36	1	97317161	97317161	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000110	exon23	c.C3037T	p.P1013S	.	.	.
.	100129439	hgsc.bcm.edu	36	1	184542907	184542909	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	CTC	CTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127709	exon5	c.1154_1156del	p.385_386del	.	.	.
USP28	57646	hgsc.bcm.edu	36	11	113179764	113179764	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020886	exon22	c.C2704T	p.L902F	.	.	.
CXCR5	643	hgsc.bcm.edu	36	11	118270050	118270050	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032966	exon1	c.A452T	p.N151I	.	.	.
OR8B4	283162	hgsc.bcm.edu	36	11	123799292	123799292	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005196	exon1	c.C686A	p.S229Y	.	.	.
MRGPRX2	117194	hgsc.bcm.edu	36	11	19033573	19033573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_054030	exon2	c.G953A	p.R318H	.	.	.
E2F8	79733	hgsc.bcm.edu	36	11	19208006	19208006	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024680	exon10	c.G1464A	p.P488P	.	.	.
WT1	7490	hgsc.bcm.edu	36	11	32378151	32378151	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198551	exon6	c.C381T	p.Y127Y	.	.	.
MS4A5	64232	hgsc.bcm.edu	36	11	59953749	59953749	+	Missense_Mutation	SNP	C	C	T	rs34799130	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_023945	exon1	c.C26T	p.P9L	.	.	.
HACE1	57531	hgsc.bcm.edu	36	6	105325769	105325769	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_020771	exon19	c.A2203C	p.N735H	.	.	.
HSPA1L	3305	hgsc.bcm.edu	36	6	31887158	31887158	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005527	exon2	c.G571T	p.G191C	.	.	.
C6orf153	88745	hgsc.bcm.edu	36	6	43101010	43101010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033112	exon3	c.C310T	p.P104S	.	.	.
ZNF318	24149	hgsc.bcm.edu	36	6	43414161	43414165	+	Frame_Shift_Del	DEL	TACTT	TACTT	-	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	TACTT	TACTT	TACTT	-	TACTT	TACTT	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014345	exon10	c.5549_5553del	p.1850_1851del	.	.	.
DNAH9	1770	hgsc.bcm.edu	36	17	11666026	11666026	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001372	exon46	c.A8772G	p.E2924E	.	.	.
ANKRD40	91369	hgsc.bcm.edu	36	17	46132055	46132055	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052855	exon3	c.C482T	p.P161L	.	.	.
SCPEP1	59342	hgsc.bcm.edu	36	17	52413471	52413471	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021626	exon2	c.G106A	p.G36S	.	.	.
SIDT1	54847	hgsc.bcm.edu	36	3	114812624	114812624	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017699	exon18	c.C1800T	p.S600S	.	.	.
IGSF11	152404	hgsc.bcm.edu	36	3	120107229	120107229	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152538	exon7	c.C604T	p.R202W	.	.	.
GOLGB1	2804	hgsc.bcm.edu	36	3	122893699	122893699	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004487	exon14	c.A7187G	p.Q2396R	.	.	.
CHCHD6	84303	hgsc.bcm.edu	36	3	128159081	128159081	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032343	exon7	c.C699T	p.H233H	.	.	.
ARPP-21	10777	hgsc.bcm.edu	36	3	35755951	35755951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016300	exon17	c.G1783A	p.A595T	.	.	.
CD200R1L	344807	hgsc.bcm.edu	36	3	114028600	114028600	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	-	G	-	Unknown	Valid	Germline	Phase_I	Capture	454			SOLID	NM_001008784	exon4	c.609delC	p.H203fs	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
CCDC91	55297	hgsc.bcm.edu	36	12	28350977	28350977	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018318	exon4	c.A303G	p.S101S	.	.	.
MTTP	4547	hgsc.bcm.edu	36	4	100751520	100751520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000253	exon15	c.C1876T	p.R626C	.	.	.
OCRL	4952	hgsc.bcm.edu	36	X	128519018	128519018	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001587	exon5	c.A274G	p.R92G	.	.	.
ATP11C	286410	hgsc.bcm.edu	36	X	138736617	138736617	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001010986	exon2	c.G68A	p.R23H	.	.	.
CYLC1	1538	hgsc.bcm.edu	36	X	83014769	83014769	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021118	exon4	c.A397G	p.K133E	.	.	.
DIAPH2	1730	hgsc.bcm.edu	36	X	96389471	96389471	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006729	exon23	c.G2821A	p.D941N	.	.	.
C10orf120	399814	hgsc.bcm.edu	36	10	124449183	124449183	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010912	exon1	c.T114A	p.S38S	.	.	.
APC	324	hgsc.bcm.edu	36	5	112201328	112201328	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C2084G	p.S695X	.	.	.
ZNF608	57507	hgsc.bcm.edu	36	5	124108079	124108079	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020747	exon1	c.A503G	p.N168S	.	.	.
PCDHA5	56143	hgsc.bcm.edu	36	5	140182584	140182584	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018908	exon1	c.C1040T	p.P347L	.	.	.
AGXT2	64902	hgsc.bcm.edu	36	5	35049928	35049928	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031900	exon10	c.C1017T	p.H339H	.	.	.
SEMA5A	9037	hgsc.bcm.edu	36	5	9175872	9175872	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003966	exon14	c.C1677T	p.A559A	.	.	.
UNC5A	90249	hgsc.bcm.edu	36	5	176228475	176228475	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133369	exon5	c.C625T	p.R209X	.	.	.
CXorf67	340602	hgsc.bcm.edu	36	X	51167705	51167705	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	.	.	.	.	.	.	.