Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SAMD9L	219285	hgsc.bcm.edu	36	7	92598985	92598985	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152703	exon5	c.G4236T	p.E1412D	.	.	.
RTEL1	51750	hgsc.bcm.edu	36	20	61774397	61774397	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016434	exon9	c.C744T	p.I248I	.	.	.
SPTB	6710	hgsc.bcm.edu	36	14	64333041	64333041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001024858	exon10	c.G1328A	p.R443H	.	.	.
TSHR	7253	hgsc.bcm.edu	36	14	80680071	80680071	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000369	exon10	c.C1916A	p.P639Q	TSHR,thyroid,NS,Substitution - Missense,+1	.	.
WARS	7453	hgsc.bcm.edu	36	14	99873231	99873231	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173701	exon10	c.G1175T	p.G392V	.	.	.
ISX	91464	hgsc.bcm.edu	36	22	33793236	33793236	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008494	exon1	c.A156T	p.P52P	.	.	.
MCM5	4174	hgsc.bcm.edu	36	22	34138565	34138565	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006739	exon8	c.C982A	p.L328I	.	.	.
FBLN1	2192	hgsc.bcm.edu	36	22	44308380	44308380	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006487	exon7	c.G722A	p.R241H	.	.	.
NPHS1	4868	hgsc.bcm.edu	36	19	41024489	41024489	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004646	exon20	c.C2783A	p.S928X	.	.	.
RYR1	6261	hgsc.bcm.edu	36	19	43767483	43767483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001042723	exon101	c.G14692A	p.E4898K	.	.	.
SARS2	54938	hgsc.bcm.edu	36	19	44108775	44108775	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145901	exon2	c.G273C	p.S91S	.	.	.
TSKS	60385	hgsc.bcm.edu	36	19	54934880	54934880	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021733	exon11	c.C1744A	p.P582T	.	.	.
ZNF175	7728	hgsc.bcm.edu	36	19	56782023	56782023	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007147	exon5	c.A627T	p.L209L	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121278353	121278353	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021110	exon6	c.G579T	p.E193D	.	.	.
ADCY8	114	hgsc.bcm.edu	36	8	131985220	131985220	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001115	exon7	c.A1891G	p.N631D	.	.	.
TRIM35	23087	hgsc.bcm.edu	36	8	27207693	27207693	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_171982	exon3	c.C583T	p.R195C	.	.	.
NRAS	4893	hgsc.bcm.edu	36	1	115060271	115060271	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002524	exon2	c.G34T	p.G12C	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.
OR10X1	128367	hgsc.bcm.edu	36	1	156815446	156815446	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004477	exon1	c.C868A	p.P290T	.	.	.
C1orf114	57821	hgsc.bcm.edu	36	1	167631052	167631052	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021179	exon6	c.C1384T	p.R462W	.	.	.
PIK3C2B	5287	hgsc.bcm.edu	36	1	202668111	202668111	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002646	exon28	c.A3995G	p.N1332S	.	.	.
SLC26A9	115019	hgsc.bcm.edu	36	1	204165687	204165687	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_134325	exon6	c.G673A	p.G225R	.	.	.
CD55	1604	hgsc.bcm.edu	36	1	205571135	205571135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000574	exon6	c.C724T	p.H242Y	.	.	.
KIAA1804	84451	hgsc.bcm.edu	36	1	231584758	231584758	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032435	exon10	c.A2789T	p.E930V	.	.	.
CSMD2	114784	hgsc.bcm.edu	36	1	33765392	33765392	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052896	exon64	c.C9793T	p.Q3265X	.	.	.
LRRC7	57554	hgsc.bcm.edu	36	1	70277154	70277154	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020794	exon19	c.A2945T	p.D982V	.	.	.
SLC44A5	204962	hgsc.bcm.edu	36	1	75481228	75481228	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152697	exon8	c.G402T	p.L134F	.	.	.
UBASH3B	84959	hgsc.bcm.edu	36	11	122174941	122174941	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032873	exon10	c.A1439G	p.N480S	.	.	.
NAT10	55226	hgsc.bcm.edu	36	11	34096599	34096599	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001144030	exon6	c.G537T	p.L179F	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152694495	152694495	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033071	exon77	c.G12805T	p.V4269F	.	.	.
MLLT4	4301	hgsc.bcm.edu	36	6	168041842	168041842	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040000	exon11	c.C1426T	p.R476C	.	.	.
C6orf81	221481	hgsc.bcm.edu	36	6	35812975	35812975	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145028	exon1	c.G112A	p.G38S	.	.	.
UBR2	23304	hgsc.bcm.edu	36	6	42679392	42679392	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184801	exon5	c.C620T	p.T207I	.	.	.
CUL9	23113	hgsc.bcm.edu	36	6	43274391	43274391	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015089	exon12	c.G2870T	p.G957V	.	.	.
GPR116	221395	hgsc.bcm.edu	36	6	46955684	46955684	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001098518	exon9	c.T866C	p.V289A	.	.	.
CRISP1	167	hgsc.bcm.edu	36	6	49916600	49916600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001131	exon6	c.G503A	p.R168Q	.	.	.
NFYA	4800	hgsc.bcm.edu	36	6	41165366	41165366	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002505	exon5	c.G380T	p.G127V	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518255	7518255	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.A751T	p.I251F	TP53,soft_tissue,fat,Substitution - Missense,+1	.	.
ZNF597	146434	hgsc.bcm.edu	36	16	3430875	3430875	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152457	exon3	c.G93T	p.L31L	.	.	.
ABCC12	94160	hgsc.bcm.edu	36	16	46695675	46695675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033226	exon20	c.G2779A	p.A927T	.	.	.
CDH19	28513	hgsc.bcm.edu	36	18	62348161	62348161	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021153	exon9	c.G1359C	p.S453S	.	.	.
OSTalpha	200931	hgsc.bcm.edu	36	3	197440165	197440165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152672	exon6	c.G610A	p.D204N	.	.	.
SETD2	29072	hgsc.bcm.edu	36	3	47059098	47059098	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014159	exon17	c.C7195T	p.R2399X	.	.	.
C3orf32	51066	hgsc.bcm.edu	36	3	8647496	8647496	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015931	exon6	c.G454C	p.V152L	.	.	.
CRELD1	78987	hgsc.bcm.edu	36	3	9960616	9960616	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001031717	exon11	c.C1079G	p.P360R	.	.	.
CCDC63	160762	hgsc.bcm.edu	36	12	109826869	109826869	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152591	exon11	c.C1437G	p.P479P	.	.	.
SCARB1	949	hgsc.bcm.edu	36	12	123850722	123850722	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005505	exon8	c.C1029A	p.S343S	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
ASB8	140461	hgsc.bcm.edu	36	12	46829761	46829761	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024095	exon4	c.C522T	p.G174G	.	.	.
LRRC10	376132	hgsc.bcm.edu	36	12	68290318	68290318	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_201550	exon1	c.C568A	p.P190T	.	.	.
TLN2	83660	hgsc.bcm.edu	36	15	60778263	60778263	+	Silent	SNP	C	C	T	rs12905981	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015059	exon13	c.C1492T	p.L498L	.	.	.
ZFP106	64397	hgsc.bcm.edu	36	15	40529594	40529594	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022473	exon2	c.A2099G	p.D700G	.	.	.
MAP9	79884	hgsc.bcm.edu	36	4	156488400	156488400	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039580	exon14	c.C1929T	p.F643F	.	.	.
ARHGEF6	9459	hgsc.bcm.edu	36	X	135690647	135690647	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004840	exon1	c.A61T	p.K21X	.	.	.
CXorf66	347487	hgsc.bcm.edu	36	X	138868013	138868013	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001013403	exon2	c.A118G	p.K40E	.	.	.
MAGEC1	9947	hgsc.bcm.edu	36	X	140822222	140822222	+	Silent	SNP	T	T	C	rs61701368	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005462	exon4	c.T1366C	p.L456L	.	.	.
ZNF645	158506	hgsc.bcm.edu	36	X	22202237	22202237	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152577	exon1	c.G1208T	p.R403L	.	.	.
KLHL4	56062	hgsc.bcm.edu	36	X	86755688	86755688	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_057162	exon2	c.G575A	p.R192H	.	.	.
GAB3	139716	hgsc.bcm.edu	36	X	153594093	153594093	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001081573	exon4	c.A674C	p.D225A	.	.	.
IL1F9	56300	hgsc.bcm.edu	36	2	113458949	113458949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019618	exon5	c.G362A	p.R121H	.	.	.
PPIG	9360	hgsc.bcm.edu	36	2	170201674	170201674	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004792	exon14	c.G1660T	p.G554C	.	.	.
ADI1	55256	hgsc.bcm.edu	36	2	3483628	3483628	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018269	exon3	c.C384T	p.P128P	.	.	.
COL15A1	1306	hgsc.bcm.edu	36	9	100828015	100828015	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001855	exon16	c.G1989T	p.E663D	.	.	.
PTPRD	5789	hgsc.bcm.edu	36	9	8508185	8508185	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040712	exon9	c.G1197A	p.G399G	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45439919	45439919	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015070	exon15	c.G4042T	p.E1348X	.	.	.
ZDHHC6	64429	hgsc.bcm.edu	36	10	114190326	114190326	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022494	exon5	c.G637A	p.A213T	.	.	.
PNLIP	5406	hgsc.bcm.edu	36	10	118311060	118311060	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000936	exon12	c.G1256A	p.W419X	.	.	.
MPP7	143098	hgsc.bcm.edu	36	10	28383029	28383029	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173496	exon19	c.T1702A	p.W568R	.	.	.
RET	5979	hgsc.bcm.edu	36	10	42917799	42917799	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020975	exon3	c.G341A	p.R114H	.	.	.
DNAJC12	56521	hgsc.bcm.edu	36	10	69241300	69241300	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201262	exon3	c.C285T	p.D95D	.	.	.
PPP1R3C	5507	hgsc.bcm.edu	36	10	93380302	93380302	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005398	exon2	c.G316T	p.E106X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203227	112203227	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C3983G	p.S1328X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13804296	13804296	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001369	exon65	c.C11102G	p.P3701R	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150903038	150903038	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001447	exon9	c.G7843A	p.G2615S	.	.	.