Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID KANK4 163782 broad.mit.edu 36 1 62512126 62512126 + Missense_Mutation SNP A A T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf MCOLN2 255231 broad.mit.edu 36 1 85169786 85169786 + Silent SNP A A G novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf RBM15 64783 broad.mit.edu 36 1 110685238 110685238 + Missense_Mutation SNP G G C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf OR10J3 441911 broad.mit.edu 36 1 157550844 157550844 + Missense_Mutation SNP G G T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf TOR1AIP2 163590 broad.mit.edu 36 1 178086742 178086742 + Silent SNP G G C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf KIF21B 23046 broad.mit.edu 36 1 199239430 199239430 + Missense_Mutation SNP C C G novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf CUL2 8453 broad.mit.edu 36 10 35357789 35357789 + Silent SNP T T C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf ERCC6 2074 broad.mit.edu 36 10 50408893 50408893 + Splice_Site SNP C C A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf ATRNL1 26033 broad.mit.edu 36 10 117016300 117016300 + Silent SNP C C T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf OS9 10956 broad.mit.edu 36 12 56398319 56398319 + Missense_Mutation SNP G G C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf ATP12A 479 broad.mit.edu 36 13 24172938 24172938 + Missense_Mutation SNP G G T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf GOLGA5 9950 broad.mit.edu 36 14 92352502 92352502 + Missense_Mutation SNP C C T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf KIAA1409 57578 broad.mit.edu 36 14 93179705 93179705 + Missense_Mutation SNP G G C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf IQCH 64799 broad.mit.edu 36 15 65573686 65573686 + Missense_Mutation SNP C C T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf BLM 641 broad.mit.edu 36 15 89153454 89153454 + Missense_Mutation SNP A A G novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf TEKT5 146279 broad.mit.edu 36 16 10628963 10628963 + Missense_Mutation SNP G G A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf ITGAL 3683 broad.mit.edu 36 16 30414944 30414944 + Missense_Mutation SNP T T C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf IRX6 79190 broad.mit.edu 36 16 53919112 53919112 + Missense_Mutation SNP A A T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf GFOD2 81577 broad.mit.edu 36 16 66277099 66277099 + Silent SNP C C A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf MYBBP1A 10514 broad.mit.edu 36 17 4389768 4389768 + Silent SNP C C T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf ZNF652 22834 broad.mit.edu 36 17 44749439 44749439 + Missense_Mutation SNP A A T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf MYCBPAP 84073 broad.mit.edu 36 17 45951058 45951058 + Missense_Mutation SNP G G C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf ICAM2 3384 broad.mit.edu 36 17 59436313 59436313 + Nonsense_Mutation SNP G G A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf BPTF 2186 broad.mit.edu 36 17 63338212 63338212 + Missense_Mutation SNP G G T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf CLUL1 27098 broad.mit.edu 36 18 635002 635002 + Silent SNP C C G novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf INSR 3643 broad.mit.edu 36 19 7094008 7094008 + Silent SNP G G A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf EPOR 2057 broad.mit.edu 36 19 11349790 11349790 + Missense_Mutation SNP G G A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf DHX34 9704 broad.mit.edu 36 19 52548282 52548282 + Missense_Mutation SNP A A T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf FAM179A 165186 broad.mit.edu 36 2 29093546 29093546 + Missense_Mutation SNP C C A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf RIF1 55183 broad.mit.edu 36 2 152002102 152002102 + Missense_Mutation SNP G G C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf MARS2 92935 broad.mit.edu 36 2 198279265 198279265 + Missense_Mutation SNP C C G novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf UGT1A9 54600 broad.mit.edu 36 2 234245714 234245714 + Missense_Mutation SNP A A T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf SCLY 51540 broad.mit.edu 36 2 238667798 238667798 + Splice_Site SNP A A C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf SYCP2 10388 broad.mit.edu 36 20 57882379 57882379 + Missense_Mutation SNP G G A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf PIWIL3 440822 broad.mit.edu 36 22 23480089 23480089 + Missense_Mutation SNP C C G novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf EPHB1 2047 broad.mit.edu 36 3 136153305 136153305 + Missense_Mutation SNP G G A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf NLGN1 22871 broad.mit.edu 36 3 175008283 175008283 + Missense_Mutation SNP G G C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf BDH1 622 broad.mit.edu 36 3 198757635 198757635 + Missense_Mutation SNP C C A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf SEC24B 10427 broad.mit.edu 36 4 110646977 110646977 + Silent SNP G G A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf BBS7 55212 broad.mit.edu 36 4 122989531 122989531 + Missense_Mutation SNP C C G novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf NNT 23530 broad.mit.edu 36 5 43691814 43691814 + Missense_Mutation SNP A A T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf GTF2H4 2968 broad.mit.edu 36 6 30988154 30988154 + Silent SNP G G T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf DOPEY1 23033 broad.mit.edu 36 6 83920651 83920651 + Missense_Mutation SNP T T A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf SYNE1 23345 broad.mit.edu 36 6 152599766 152599766 + Missense_Mutation SNP T T C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf WDR27 253769 broad.mit.edu 36 6 169801541 169801541 + Splice_Site SNP T T G novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf HGF 3082 broad.mit.edu 36 7 81196910 81196910 + Nonsense_Mutation SNP C C T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf CNTNAP2 26047 broad.mit.edu 36 7 146967232 146967232 + Missense_Mutation SNP G G A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf LONRF1 91694 broad.mit.edu 36 8 12624987 12624987 + Missense_Mutation SNP G G T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf TOPORS 10210 broad.mit.edu 36 9 32533969 32533969 + Missense_Mutation SNP G G T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf COL15A1 1306 broad.mit.edu 36 9 100869130 100869130 + Missense_Mutation SNP G G T novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf BAT2L 84726 broad.mit.edu 36 9 133297870 133297870 + Missense_Mutation SNP C C A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf SMS 6611 broad.mit.edu 36 X 21905271 21905271 + Silent SNP T T C novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf OGT 8473 broad.mit.edu 36 X 70693810 70693810 + Missense_Mutation SNP C C A novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf TP53 7157 broad.mit.edu 36 17 7520060 7520061 + Frame_Shift_Ins INS - C - novel none TCGA-61-2008-01A-02W-0722-08 TCGA-61-2008-11A-01W-0722-08 - - C C - - Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 20d280b2-7cc1-4f13-9a5a-0182848a0458 4df7e671-6a1f-4e16-b710-e030fbb819cf