Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ST6GALNAC3 256435 broad.mit.edu 36 1 76650491 76650491 + Missense_Mutation SNP T T C novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 SEMA6C 10500 broad.mit.edu 36 1 149377178 149377178 + Missense_Mutation SNP G G C novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 PVRL4 81607 broad.mit.edu 36 1 159314045 159314045 + Missense_Mutation SNP G G T novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 LPGAT1 9926 broad.mit.edu 36 1 210023255 210023255 + Missense_Mutation SNP C C G novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 HSPA14 51182 broad.mit.edu 36 10 14937856 14937856 + Missense_Mutation SNP G G C novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 TCF7L2 6934 broad.mit.edu 36 10 114895812 114895812 + Missense_Mutation SNP C C A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 CLNS1A 1207 broad.mit.edu 36 11 77018591 77018591 + Missense_Mutation SNP G G A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 PKNOX2 63876 broad.mit.edu 36 11 124726450 124726450 + Missense_Mutation SNP G G C novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 A2ML1 144568 broad.mit.edu 36 12 8882236 8882236 + Missense_Mutation SNP T T A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 OSBPL8 114882 broad.mit.edu 36 12 75315633 75315633 + Missense_Mutation SNP G G T novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 PLA2G4F 255189 broad.mit.edu 36 15 40229594 40229594 + Missense_Mutation SNP C C G novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 C15orf42 90381 broad.mit.edu 36 15 87968998 87968998 + Missense_Mutation SNP G G C novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 WDR93 56964 broad.mit.edu 36 15 88077313 88077313 + Nonsense_Mutation SNP C C A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 DNAH3 55567 broad.mit.edu 36 16 20882913 20882913 + Missense_Mutation SNP G G A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 JMJD5 79831 broad.mit.edu 36 16 27129149 27129149 + Silent SNP C C T novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 ANKFY1 51479 broad.mit.edu 36 17 4092424 4092424 + Silent SNP G G A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 TP53 7157 broad.mit.edu 36 17 7518964 7518964 + Nonsense_Mutation SNP C C A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 ADAP2 55803 broad.mit.edu 36 17 26277992 26277992 + Missense_Mutation SNP C C T novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 PSMD11 5717 broad.mit.edu 36 17 27815669 27815669 + Silent SNP G G A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 GPR179 440435 broad.mit.edu 36 17 33748892 33748892 + Missense_Mutation SNP G G C novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 CTAGE1 64693 broad.mit.edu 36 18 18251045 18251045 + Missense_Mutation SNP T T C novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 GP6 51206 broad.mit.edu 36 19 60217703 60217703 + Silent SNP C C T novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 EPAS1 2034 broad.mit.edu 36 2 46459304 46459304 + Missense_Mutation SNP A A G novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 IL18R1 8809 broad.mit.edu 36 2 102350806 102350806 + Missense_Mutation SNP G G A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 NCKAP5 344148 broad.mit.edu 36 2 133257527 133257527 + Missense_Mutation SNP C C A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 TTN 7273 broad.mit.edu 36 2 179123136 179123136 + Missense_Mutation SNP T T A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 TMPRSS2 7113 broad.mit.edu 36 21 41791942 41791942 + Missense_Mutation SNP C C G novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 TRPM2 7226 broad.mit.edu 36 21 44623320 44623320 + Missense_Mutation SNP G G A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 GRAMD1C 54762 broad.mit.edu 36 3 115105755 115105755 + Silent SNP A A G novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 STXBP5L 9515 broad.mit.edu 36 3 122246975 122246975 + Missense_Mutation SNP G G T novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 MAGEF1 64110 broad.mit.edu 36 3 185912104 185912104 + Nonsense_Mutation SNP A A T novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 LEPREL1 55214 broad.mit.edu 36 3 191320765 191320765 + Silent SNP G G C novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 UBE2CBP 90025 broad.mit.edu 36 6 83723832 83723832 + Missense_Mutation SNP G G A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 MUC17 140453 broad.mit.edu 36 7 100470834 100470834 + Silent SNP T T A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 ANK1 286 broad.mit.edu 36 8 41662847 41662847 + Missense_Mutation SNP C C T novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 ZNF16 7564 broad.mit.edu 36 8 146128093 146128093 + Missense_Mutation SNP C C A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 ZNF16 7564 broad.mit.edu 36 8 146128165 146128165 + Missense_Mutation SNP C C G novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 WNK3 65267 broad.mit.edu 36 X 54276084 54276084 + Nonsense_Mutation SNP G G A novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100 KIAA2022 340533 broad.mit.edu 36 X 73877895 73877895 + Silent SNP C C T novel none TCGA-61-2002-01A-01W-0722-08 TCGA-61-2002-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 90f1ea49-ae0d-4f4d-9df0-cb993ec99642 81b9ff25-b257-449b-ba6f-c5a701083100