Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error ENSG00000210082 0 genome.wustl.edu 36 MT 3060 3060 + RNA SNP T C C novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 MT 3060 3060 T C SNP ENSG00000210082 ENST00000387347 human ensembl 54_36p +1 known rna NULL NULL NULL - - - no_errors MT-ND2 0 genome.wustl.edu 36 MT 4814 4814 + Missense_Mutation SNP T C C novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 MT 4814 4814 T C SNP MT-ND2 ENST00000361453 human ensembl 54_36p +1 known missense c.344 p.V115A NULL HMMPfam_Oxidored_q1 HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C - no_stop_codon:bad_bp_length_for_coding_region NLRP6 171389 genome.wustl.edu 36 11 271191 271191 + Missense_Mutation SNP C C A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 11 271191 271191 C A SNP NLRP6 NM_138329 human genbank 54_36p +1 provisional missense c.1457 p.P486Q 0.000 NULL superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368 - no_errors CYTL1 54360 genome.wustl.edu 36 4 5069807 5069807 + Nonsense_Mutation SNP C C A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 4 5069807 5069807 C A SNP CYTL1 NM_018659 human genbank 54_36p -1 validated nonsense c.154 p.E52* 0.667 NULL NULL - no_errors C10orf18 54906 genome.wustl.edu 36 10 5831741 5831741 + Silent SNP A A G novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 10 5831741 5831741 A G SNP C10orf18 NM_017782 human genbank 54_36p +1 validated silent c.6351 p.E2117 0.978 NULL NULL - no_errors PTPRD 5789 genome.wustl.edu 36 9 8518585 8518585 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 9 8518585 8518585 C T SNP PTPRD ENST00000356435 human ensembl 54_36p -1 known missense c.547 p.V183I 1.000 superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408 superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1 - no_errors USP7 7874 genome.wustl.edu 36 16 8922579 8922579 + Missense_Mutation SNP C C G novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 16 8922579 8922579 C G SNP USP7 NM_003470 human genbank 54_36p -1 validated missense c.458 p.R153P 1.000 superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2 - no_errors MYH13 8735 genome.wustl.edu 36 17 10160068 10160068 + Splice_Site SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 17 10160068 10160068 C T SNP MYH13 NM_003802 human genbank 54_36p -1 validated splice_site c.3739-1 e26-1 1.000 - - - no_errors SYCP2L 221711 genome.wustl.edu 36 6 11015829 11015829 + Missense_Mutation SNP C C A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 6 11015829 11015829 C A SNP SYCP2L NM_001040274 human genbank 54_36p +1 provisional missense c.745 p.L249I 0.723 NULL NULL - no_errors DOCK6 57572 genome.wustl.edu 36 19 11214770 11214770 + Missense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 19 11214770 11214770 G A SNP DOCK6 NM_020812 human genbank 54_36p -1 validated missense c.1445 p.P482L 1.000 NULL HMMPfam_Ded_cyto - no_errors LOC728211 728211 genome.wustl.edu 36 18 12066012 12066012 + RNA SNP G G T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 18 12066012 12066012 G T SNP LOC728211 XR_015403 human genbank 54_36p -1 model rna NULL NULL 0.998 - - - pseudogene FREM1 158326 genome.wustl.edu 36 9 14759771 14759771 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 9 14759771 14759771 C T SNP FREM1 NM_144966 human genbank 54_36p -1 validated missense c.5155 p.V1719M 0.003 NULL superfamily_Cadherin-like,PatternScan_SPASE_I_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C - no_errors LOC729501 729501 genome.wustl.edu 36 13 17940510 17940510 + RNA SNP G G T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 13 17940510 17940510 G T SNP LOC729501 XR_037080 human genbank 54_36p -1 model rna NULL NULL 0.408 - - - no_errors OR4N2 390429 genome.wustl.edu 36 14 19366316 19366316 + Missense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 14 19366316 19366316 G A SNP OR4N2 NM_001004723 human genbank 54_36p +1 provisional missense c.869 p.R290H 0.037 superfamily_SSF81321 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors NCAM2 4685 genome.wustl.edu 36 21 21578491 21578491 + Silent SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 21 21578491 21578491 C T SNP NCAM2 NM_004540 human genbank 54_36p +1 reviewed silent c.237 p.T79 1.000 HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2 HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3 - no_errors IL28RA 163702 genome.wustl.edu 36 1 24356638 24356638 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 1 24356638 24356638 C T SNP IL28RA NM_170743 human genbank 54_36p -1 reviewed missense c.1132 p.E378K 0.000 NULL superfamily_Fibronectin type III - no_errors CDH10 1008 genome.wustl.edu 36 5 24528695 24528695 + Missense_Mutation SNP G G C novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 5 24528695 24528695 G C SNP CDH10 NM_006727 human genbank 54_36p -1 reviewed missense c.1612 p.Q538E 0.051 superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C - no_errors SLC5A6 8884 genome.wustl.edu 36 2 27281234 27281234 + Silent SNP G G C novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 2 27281234 27281234 G C SNP SLC5A6 NM_021095 human genbank 54_36p -1 provisional silent c.804 p.L268 0.997 HMMPfam_SSF PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1 - no_errors EHD3 30845 genome.wustl.edu 36 2 31338015 31338015 + Missense_Mutation SNP A A G novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 2 31338015 31338015 A G SNP EHD3 NM_014600 human genbank 54_36p +1 provisional missense c.1012 p.I338V 1.000 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1 - no_errors ZNF341 84905 genome.wustl.edu 36 20 31796644 31796644 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 20 31796644 31796644 C T SNP ZNF341 NM_032819 human genbank 54_36p +1 validated missense c.217 p.R73W 1.000 HMMSmart_ZnF_C2H2 HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors KIFC1 3833 genome.wustl.edu 36 6 33482586 33482586 + Missense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 6 33482586 33482586 G A SNP KIFC1 NM_002263 human genbank 54_36p +1 validated missense c.1933 p.E645K 1.000 superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1 - no_errors PHF20 51230 genome.wustl.edu 36 20 33922392 33922392 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 20 33922392 33922392 C T SNP PHF20 NM_016436 human genbank 54_36p +1 validated missense c.1024 p.P342S 0.914 NULL superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1 - no_errors BRWD1 54014 genome.wustl.edu 36 21 39590075 39590075 + Missense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 21 39590075 39590075 G A SNP BRWD1 NM_018963 human genbank 54_36p -1 reviewed missense c.434 p.S145F 0.526 NULL HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1 - no_errors LOC388907 388907 genome.wustl.edu 36 22 41502959 41502959 + RNA SNP A T T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 22 41502959 41502959 A T SNP LOC388907 XR_017615 human genbank 54_36p -1 model rna NULL NULL 1.000 - - - pseudogene C2CD2 25966 genome.wustl.edu 36 21 42192424 42192424 + Silent SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 21 42192424 42192424 C T SNP C2CD2 NM_015500 human genbank 54_36p -1 validated silent c.1677 p.P559 0.000 NULL superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2 - no_errors MYO5B 4645 genome.wustl.edu 36 18 45743316 45743316 + Splice_Site SNP C C G novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 18 45743316 45743316 C G SNP MYO5B NM_001080467 human genbank 54_36p -1 provisional splice_site c.1404+1 e11+1 1.000 - - - no_errors CCR3 1232 genome.wustl.edu 36 3 46282521 46282521 + Missense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 3 46282521 46282521 G A SNP CCR3 NM_001837 human genbank 54_36p +1 reviewed missense c.868 p.A290T 0.004 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors ZNF423 23090 genome.wustl.edu 36 16 48322216 48322216 + Silent SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 16 48322216 48322216 G A SNP ZNF423 NM_015069 human genbank 54_36p -1 reviewed silent c.244 p.L82 1.000 HMMSmart_ZnF_C2H2 HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors KPNA3 3839 genome.wustl.edu 36 13 49194165 49194165 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 13 49194165 49194165 C T SNP KPNA3 NM_002267 human genbank 54_36p -1 reviewed missense c.653 p.R218Q 1.000 superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185 HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185 - no_errors RNF138P1 379013 genome.wustl.edu 36 5 54862408 54862408 + RNA SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 5 54862408 54862408 C T SNP RNF138P1 NR_001575 human genbank 54_36p -1 provisional rna NULL NULL 0.601 - - - pseudogene OR5M3 219482 genome.wustl.edu 36 11 55993670 55993670 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 11 55993670 55993670 C T SNP OR5M3 NM_001004742 human genbank 54_36p -1 provisional missense c.880 p.D294N 0.978 superfamily_Family A G protein-coupled receptor-like superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors C14orf37 145407 genome.wustl.edu 36 14 57675770 57675770 + Silent SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 14 57675770 57675770 G A SNP C14orf37 NM_001001872 human genbank 54_36p -1 predicted silent c.60 p.S20 0.022 NULL NULL - no_errors LILRB4 11006 genome.wustl.edu 36 19 59869968 59869968 + Missense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 19 59869968 59869968 G A SNP LILRB4 NM_006847 human genbank 54_36p +1 reviewed missense c.997 p.V333M 0.001 NULL superfamily_Immunoglobulin,HMMPfam_ig - no_errors LOC100129585 0 genome.wustl.edu 36 X 65092965 65092965 + Missense_Mutation SNP C C A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 X 65092965 65092965 C A SNP LOC100129585 XM_001721365 human genbank 54_36p -1 model missense c.139 p.G47C 1.000 NULL NULL - no_errors VAC14 55697 genome.wustl.edu 36 16 69374476 69374476 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 16 69374476 69374476 C T SNP VAC14 NM_018052 human genbank 54_36p -1 validated missense c.772 p.E258K 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold,HMMPfam_HEAT - no_errors SNORD1B 0 genome.wustl.edu 36 17 72068804 72068804 + RNA SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 17 72068804 72068804 C T SNP SNORD1B ENST00000363091 human ensembl 54_36p +1 known rna NULL NULL 0.204 - - - no_errors ENSG00000185044 0 genome.wustl.edu 36 3 75873138 75873138 + Missense_Mutation SNP T T C novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 3 75873138 75873138 T C SNP ENSG00000185044 ENST00000329536 human ensembl 54_36p -1 known missense c.235 p.T79A 0.000 NULL superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB - no_stop_codon F2R 2149 genome.wustl.edu 36 5 76064338 76064338 + Missense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 5 76064338 76064338 G A SNP F2R NM_001992 human genbank 54_36p +1 reviewed missense c.532 p.V178I 0.981 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors MYF5 4617 genome.wustl.edu 36 12 79635369 79635369 + Missense_Mutation SNP G G C novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 12 79635369 79635369 G C SNP MYF5 NM_005593 human genbank 54_36p +1 validated missense c.396 p.E132D 1.000 superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH HMMPfam_Basic,HMMSmart_BASIC,superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH - no_errors SEMA3C 10512 genome.wustl.edu 36 7 80212489 80212489 + Missense_Mutation SNP T T A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 7 80212489 80212489 T A SNP SEMA3C NM_006379 human genbank 54_36p -1 validated missense c.1913 p.Q638L 1.000 superfamily_SSF48726,HMMSmart_IG superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG - no_errors REXO1L5P 441361 genome.wustl.edu 36 8 86872648 86872648 + Missense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 8 86872648 86872648 G A SNP REXO1L5P XM_496983 human genbank 54_36p -1 model missense c.1508 p.A503V 0.998 superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T - pseudogene ZNF778 197320 genome.wustl.edu 36 16 87821243 87821243 + Missense_Mutation SNP T T C novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 16 87821243 87821243 T C SNP ZNF778 NM_182531 human genbank 54_36p +1 validated missense c.962 p.L321P 0.000 superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355 superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors RIPK2 8767 genome.wustl.edu 36 8 90868004 90868004 + Missense_Mutation SNP C C G novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 8 90868004 90868004 C G SNP RIPK2 NM_003821 human genbank 54_36p +1 reviewed missense c.1072 p.P358A 0.000 NULL superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_DEATH domain,HMMPfam_CARD - no_errors ABCA1 19 genome.wustl.edu 36 9 106594955 106594955 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 9 106594955 106594955 C T SNP ABCA1 NM_005502 human genbank 54_36p -1 reviewed missense c.5690 p.R1897Q 0.992 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1 - no_errors CSMD3 114788 genome.wustl.edu 36 8 113345216 113345216 + Silent SNP A A T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 8 113345216 113345216 A T SNP CSMD3 NM_198123 human genbank 54_36p -1 validated silent c.9690 p.A3230 1.000 superfamily_Complement control module/SCR domain superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10 - no_errors CCDC52 152185 genome.wustl.edu 36 3 114658745 114658745 + Missense_Mutation SNP T T C novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 3 114658745 114658745 T C SNP CCDC52 NM_144718 human genbank 54_36p -1 validated missense c.1585 p.I529V 0.925 NULL NULL - no_errors GPR37 2861 genome.wustl.edu 36 7 124173902 124173902 + Silent SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 7 124173902 124173902 G A SNP GPR37 NM_005302 human genbank 54_36p -1 provisional silent c.1755 p.N585 0.998 superfamily_Family A G protein-coupled receptor-like superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 - no_errors PIK3CB 5291 genome.wustl.edu 36 3 139866614 139866614 + Missense_Mutation SNP A A G novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 3 139866614 139866614 A G SNP PIK3CB NM_006219 human genbank 54_36p -1 provisional missense c.2626 p.F876L 1.000 superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2 - no_errors LRP1B 53353 genome.wustl.edu 36 2 141377194 141377194 + Silent SNP C C G novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 2 141377194 141377194 C G SNP LRP1B NM_018557 human genbank 54_36p -1 validated silent c.3531 p.S1177 0.111 superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,HMMPfam_EGF,HMMPfam_NHL,HMMPfam_EGF_2,PatternScan_EGF_1 - no_errors RNF115 27246 genome.wustl.edu 36 1 144393381 144393381 + Missense_Mutation SNP A A G novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 1 144393381 144393381 A G SNP RNF115 NM_014455 human genbank 54_36p +1 validated missense c.430 p.I144V 0.995 NULL superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4 - no_errors CNTNAP2 26047 genome.wustl.edu 36 7 146460323 146460323 + Silent SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 7 146460323 146460323 C T SNP CNTNAP2 NM_014141 human genbank 54_36p +1 reviewed silent c.1137 p.N379 1.000 superfamily_Concanavalin A-like lectins/glucanases HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1,HMMSmart_SM00294 - no_errors MLL3 58508 genome.wustl.edu 36 7 151601792 151601792 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 7 151601792 151601792 C T SNP MLL3 NM_170606 human genbank 54_36p -1 reviewed missense c.943 p.G315S 1.000 HMMSmart_SM00249 PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508 - no_errors C5orf40 408263 genome.wustl.edu 36 5 156702771 156702771 + Missense_Mutation SNP C C A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 5 156702771 156702771 C A SNP C5orf40 NM_001001343 human genbank 54_36p -1 validated missense c.352 p.A118S 0.989 NULL superfamily_FN_III-like - no_errors PTPRN2 5799 genome.wustl.edu 36 7 157619285 157619285 + Silent SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 7 157619285 157619285 G A SNP PTPRN2 NM_002847 human genbank 54_36p -1 reviewed silent c.1401 p.A467 0.000 NULL superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1 - no_errors KCNAB1 7881 genome.wustl.edu 36 3 157660351 157660351 + Nonsense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 3 157660351 157660351 G A SNP KCNAB1 NM_172160 human genbank 54_36p +1 reviewed nonsense c.479 p.W160* 1.000 superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red - no_errors BRD7P2 647076 genome.wustl.edu 36 3 161301579 161301579 + RNA SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 3 161301579 161301579 G A SNP BRD7P2 XR_017374 human genbank 54_36p +1 model rna NULL NULL 0.024 - - - pseudogene KRT18P46 391458 genome.wustl.edu 36 2 162145460 162145460 + Missense_Mutation SNP A A T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 2 162145460 162145460 A T SNP KRT18P46 XM_001720115 human genbank 54_36p +1 model missense c.343 p.M115L 0.993 HMMPfam_Filament HMMPfam_Filament - pseudogene BAT2D1 23215 genome.wustl.edu 36 1 169771293 169771293 + Missense_Mutation SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 1 169771293 169771293 C T SNP BAT2D1 ENST00000392080 human ensembl 54_36p +1 known missense c.1970 p.P657L 1.000 NULL HMMPfam_BAT2_N - no_errors NPHS2 7827 genome.wustl.edu 36 1 177795452 177795452 + Silent SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 1 177795452 177795452 C T SNP NPHS2 NM_014625 human genbank 54_36p -1 reviewed silent c.519 p.E173 1.000 HMMSmart_SM00244,HMMPfam_Band_7 HMMSmart_SM00244,HMMPfam_Band_7,PatternScan_BAND_7 - no_errors CCDC141 285025 genome.wustl.edu 36 2 179410415 179410415 + Missense_Mutation SNP C C A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 2 179410415 179410415 C A SNP CCDC141 NM_173648 human genbank 54_36p -1 provisional missense c.2051 p.G684V 0.059 NULL HMMPfam_I-set - no_errors RGS1 5996 genome.wustl.edu 36 1 190812585 190812585 + Missense_Mutation SNP C C A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 1 190812585 190812585 C A SNP RGS1 NM_002922 human genbank 54_36p +1 reviewed missense c.277 p.Q93K 0.883 superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315 superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315 - no_errors GPR1 2825 genome.wustl.edu 36 2 206749772 206749772 + Nonsense_Mutation SNP G G A novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 2 206749772 206749772 G A SNP GPR1 NM_001098199 human genbank 54_36p -1 validated nonsense c.445 p.R149* 0.999 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 - no_errors MARCH4 57574 genome.wustl.edu 36 2 216832378 216832378 + Missense_Mutation SNP A A G novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 2 216832378 216832378 A G SNP MARCH4 NM_020814 human genbank 54_36p -1 validated missense c.1135 p.Y379H 1.000 NULL HMMSmart_RINGv,HMMPfam_zf-C3HC4 - no_errors OR2M4 26245 genome.wustl.edu 36 1 246468896 246468896 + Silent SNP C C T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 1 246468896 246468896 C T SNP OR2M4 NM_017504 human genbank 54_36p +1 provisional silent c.43 p.L15 0.282 superfamily_SSF81321 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors LYAR 55646 genome.wustl.edu 36 4 4321184 4321184 + Frame_Shift_Del DEL T T - novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 4 4321184 4321184 T - DEL LYAR NM_017816 human genbank 54_36p -1 validated frame_shift_del c.979 p.I327fs 0.727 NULL HMMPfam_zf-LYAR (deletion:cds_exon[4321158,4321243]) no_errors RALY 22913 genome.wustl.edu 36 20 32123693 32123694 + Frame_Shift_Ins INS - - T novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 20 32123693 32123694 - T INS RALY NM_016732 human genbank 54_36p +1 reviewed frame_shift_ins c.152_153 p.S52fs 1.000:1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 - no_errors RPAP2 79871 genome.wustl.edu 36 1 92618977 92618982 + In_Frame_Del DEL AAGTCT AAGTCT - novel unknown TCGA-61-1899-01A-01W-0639-09 TCGA-61-1899-11A-01W-0639-09 AAGTCT AAGTCT Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx df06fa82-6da5-499e-9cbb-d2e7a1811510 a2420405-8104-4c72-a446-0f5f7849d4a2 1 92618977 92618982 AAGTCT - DEL RPAP2 NM_024813 human genbank 54_36p +1 provisional in_frame_del c.1797_1802 p.SL600in_frame_del 1.000:1.000:0.998:0.994:0.998:0.998 NULL HMMPfam_RPAP2_Rtr1 (deletion:cds_exon[92618869,92619018]) no_errors