Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
LOC100133841	0	genome.wustl.edu	36	19	41854	41854	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	41854	41854	A	G	SNP	LOC100133841	XM_001715845	human	genbank	54_36p	-1	model	missense	c.335	p.V112A	0.000	NULL	NULL	-	no_start_codon:pseudogene
SMARCA2	6595	genome.wustl.edu	36	9	2066321	2066321	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	9	2066321	2066321	G	A	SNP	SMARCA2	NM_003070	human	genbank	54_36p	+1	reviewed	silent	c.2028	p.Q676	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_QLQ,HMMPfam_HSA,HMMSmart_SM00573,HMMPfam_BRK,HMMSmart_SM00592,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
TRPV3	162514	genome.wustl.edu	36	17	3382937	3382937	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	17	3382937	3382937	T	A	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	missense	c.829	p.I277F	0.996	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	no_errors
ART1	417	genome.wustl.edu	36	11	3637414	3637414	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	11	3637414	3637414	G	A	SNP	ART1	NM_004314	human	genbank	54_36p	+1	reviewed	missense	c.89	p.R30Q	0.728	NULL	superfamily_SSF56399,HMMPfam_ART,PatternScan_ART	-	no_errors
DNM2	1785	genome.wustl.edu	36	19	10777607	10777607	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	10777607	10777607	C	G	SNP	DNM2	NM_001005360	human	genbank	54_36p	+1	reviewed	missense	c.1509	p.S503R	0.959	HMMPfam_Dynamin_M	HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302	-	no_errors
ATP6V1C2	245973	genome.wustl.edu	36	2	10829487	10829487	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	10829487	10829487	T	C	SNP	ATP6V1C2	NM_001039362	human	genbank	54_36p	+1	reviewed	missense	c.542	p.L181P	0.998	HMMPfam_V-ATPase_C	HMMPfam_V-ATPase_C	-	no_errors
ECSIT	51295	genome.wustl.edu	36	19	11484906	11484906	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	11484906	11484906	C	G	SNP	ECSIT	NM_016581	human	genbank	54_36p	-1	validated	missense	c.703	p.E235Q	1.000	HMMPfam_ECSIT	HMMPfam_ECSIT	-	no_errors
LOC649352	649352	genome.wustl.edu	36	8	12282139	12282139	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	8	12282139	12282139	C	T	SNP	LOC649352	XR_042361	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.973	-	-	-	pseudogene
ARNTL	406	genome.wustl.edu	36	11	13363896	13363896	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	11	13363896	13363896	G	C	SNP	ARNTL	NM_001030272	human	genbank	54_36p	+1	reviewed	missense	c.1699	p.D567H	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	-	no_errors
C3orf20	84077	genome.wustl.edu	36	3	14738294	14738294	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	3	14738294	14738294	G	T	SNP	C3orf20	NM_032137	human	genbank	54_36p	+1	predicted	missense	c.1565	p.R522L	0.957	NULL	NULL	-	no_errors
INSC	387755	genome.wustl.edu	36	11	15179057	15179057	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	11	15179057	15179057	C	A	SNP	INSC	NM_001031853	human	genbank	54_36p	+1	provisional	missense	c.946	p.H316N	0.989	superfamily_ARM repeat,HMMSmart_SM00185	PatternScan_PA2_HIS,superfamily_ARM repeat,HMMSmart_SM00185	-	no_errors
LOC644768	644768	genome.wustl.edu	36	22	15295166	15295166	+	RNA	SNP	A	A	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	22	15295166	15295166	A	T	SNP	LOC644768	XR_016834	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.993	-	-	-	pseudogene
ABHD8	79575	genome.wustl.edu	36	19	17272733	17272733	+	Silent	SNP	A	A	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	17272733	17272733	A	T	SNP	ABHD8	NM_024527	human	genbank	54_36p	-1	validated	silent	c.693	p.A231	0.241	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1	-	no_errors
CTAGE1	64693	genome.wustl.edu	36	18	18251131	18251131	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	18	18251131	18251131	T	A	SNP	CTAGE1	NM_172241	human	genbank	54_36p	-1	validated	missense	c.642	p.R214S	0.037	NULL	NULL	-	no_errors
RRAGA	10670	genome.wustl.edu	36	9	19040426	19040426	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	9	19040426	19040426	T	A	SNP	RRAGA	NM_006570	human	genbank	54_36p	+1	validated	missense	c.769	p.S257T	1.000	HMMPfam_Gtr1_RagA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Gtr1_RagA	-	no_errors
LOC440225	440225	genome.wustl.edu	36	15	19402758	19402758	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	15	19402758	19402758	C	A	SNP	LOC440225	XR_042334	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SAP18	10284	genome.wustl.edu	36	13	20613102	20613102	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	13	20613102	20613102	T	C	SNP	SAP18	NM_005870	human	genbank	54_36p	+1	reviewed	silent	c.150	p.N50	1.000	HMMPfam_SAP18	HMMPfam_SAP18	-	no_errors
APOB	338	genome.wustl.edu	36	2	21113480	21113480	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	21113480	21113480	G	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	silent	c.690	p.G230	0.995	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	-	no_errors
RECQL	5965	genome.wustl.edu	36	12	21534416	21534416	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	12	21534416	21534416	T	G	SNP	RECQL	NM_002907	human	genbank	54_36p	-1	reviewed	silent	c.378	p.P126	0.979	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
CDH12	1010	genome.wustl.edu	36	5	21787900	21787900	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	5	21787900	21787900	G	T	SNP	CDH12	NM_004061	human	genbank	54_36p	-1	reviewed	missense	c.2088	p.D696E	0.017	HMMPfam_Cadherin_C	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
LOC100133412	0	genome.wustl.edu	36	9	22152548	22152548	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	9	22152548	22152548	G	A	SNP	LOC100133412	XM_001716309	human	genbank	54_36p	+1	model	missense	c.280	p.D94N	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
MYO18B	84700	genome.wustl.edu	36	22	24752587	24752587	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	22	24752587	24752587	A	T	SNP	MYO18B	NM_032608	human	genbank	54_36p	+1	reviewed	missense	c.6647	p.K2216M	0.004	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors
ZKSCAN2	342357	genome.wustl.edu	36	16	25162899	25162899	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	16	25162899	25162899	C	G	SNP	ZKSCAN2	NM_001012981	human	genbank	54_36p	-1	validated	missense	c.1689	p.K563N	1.000	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
KIAA0556	23247	genome.wustl.edu	36	16	27668451	27668451	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	16	27668451	27668451	G	T	SNP	KIAA0556	NM_015202	human	genbank	54_36p	+1	validated	missense	c.2669	p.S890I	0.837	NULL	superfamily_Galactose-binding domain-like,PatternScan_AKH	-	no_errors
XPO6	23214	genome.wustl.edu	36	16	28075189	28075189	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	16	28075189	28075189	T	A	SNP	XPO6	NM_015171	human	genbank	54_36p	-1	provisional	silent	c.804	p.P268	0.750	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_Xpo1	-	no_errors
HSD3B7	80270	genome.wustl.edu	36	16	30905460	30905460	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	16	30905460	30905460	C	G	SNP	HSD3B7	NM_025193	human	genbank	54_36p	+1	reviewed	missense	c.465	p.H155Q	0.965	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	-	no_errors
PEX12	5193	genome.wustl.edu	36	17	30928656	30928656	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	17	30928656	30928656	A	G	SNP	PEX12	NM_000286	human	genbank	54_36p	-1	reviewed	missense	c.194	p.L65P	0.990	HMMPfam_Pex2_Pex12	HMMPfam_Pex2_Pex12,superfamily_RING/U-box	-	no_errors
DDX58	23586	genome.wustl.edu	36	9	32483809	32483809	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	9	32483809	32483809	A	G	SNP	DDX58	NM_014314	human	genbank	54_36p	-1	reviewed	missense	c.373	p.S125P	0.075	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
TTC27	55622	genome.wustl.edu	36	2	32757472	32757472	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	32757472	32757472	G	A	SNP	TTC27	NM_017735	human	genbank	54_36p	+1	provisional	silent	c.1098	p.V366	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMPfam_TPR_2	-	no_errors
ITPR3	3710	genome.wustl.edu	36	6	33740704	33740704	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	6	33740704	33740704	G	A	SNP	ITPR3	NM_002224	human	genbank	54_36p	+1	validated	missense	c.1228	p.E410K	1.000	HMMPfam_MIR,superfamily_MIR	HMMPfam_Ins145_P3_rec,superfamily_MIR,HMMSmart_MIR,HMMPfam_MIR,superfamily_SSF100909,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors
MLLT6	4302	genome.wustl.edu	36	17	34126615	34126615	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	17	34126615	34126615	G	T	SNP	MLLT6	NM_005937	human	genbank	54_36p	+1	validated	missense	c.1506	p.Q502H	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
GJB5	2709	genome.wustl.edu	36	1	34995797	34995797	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	34995797	34995797	G	T	SNP	GJB5	NM_005268	human	genbank	54_36p	+1	provisional	missense	c.279	p.M93I	1.000	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
STARD3	10948	genome.wustl.edu	36	17	35063453	35063453	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	17	35063453	35063453	A	C	SNP	STARD3	NM_006804	human	genbank	54_36p	+1	provisional	missense	c.143	p.D48A	1.000	HMMPfam_MENTAL	HMMPfam_MENTAL,superfamily_SSF55961,HMMPfam_START,HMMSmart_START	-	no_errors
CXorf59	286464	genome.wustl.edu	36	X	36072611	36072611	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	X	36072611	36072611	G	A	SNP	CXorf59	NM_173695	human	genbank	54_36p	+1	predicted	missense	c.1273	p.V425M	0.228	NULL	superfamily_Calponin-homology	-	no_errors
LMBRD2	92255	genome.wustl.edu	36	5	36139950	36139950	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	5	36139950	36139950	T	G	SNP	LMBRD2	NM_001007527	human	genbank	54_36p	-1	validated	silent	c.2043	p.G681	1.000	NULL	HMMPfam_LMBR1	-	no_errors
INPP5B	3633	genome.wustl.edu	36	1	38170077	38170077	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	38170077	38170077	C	A	SNP	INPP5B	ENST00000373023	human	ensembl	54_36p	-1	known	missense	c.627	p.K209N	0.000	NULL	PatternScan_LECTIN_LEGUME_BETA,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
MACF1	23499	genome.wustl.edu	36	1	39680824	39680824	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	39680824	39680824	C	G	SNP	MACF1	NM_033044	human	genbank	54_36p	+1	reviewed	missense	c.14431	p.H4811D	1.000	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2	-	no_errors
CDC2L5	8621	genome.wustl.edu	36	7	40069001	40069001	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	7	40069001	40069001	G	T	SNP	CDC2L5	NM_003718	human	genbank	54_36p	+1	reviewed	silent	c.2652	p.L884	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CAPN3	825	genome.wustl.edu	36	15	40490438	40490438	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	15	40490438	40490438	C	A	SNP	CAPN3	NM_000070	human	genbank	54_36p	+1	reviewed	missense	c.2328	p.N776K	1.000	superfamily_EF-hand	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
LOC100128682	0	genome.wustl.edu	36	19	40591057	40591057	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	40591057	40591057	G	C	SNP	LOC100128682	XM_001719567	human	genbank	54_36p	+1	model	missense	c.568	p.V190L	0.002	NULL	NULL	-	no_errors
HPDL	84842	genome.wustl.edu	36	1	45566218	45566218	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	45566218	45566218	G	C	SNP	HPDL	NM_032756	human	genbank	54_36p	+1	validated	missense	c.811	p.E271Q	0.000	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	-	no_errors
AXL	558	genome.wustl.edu	36	19	46419749	46419749	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	46419749	46419749	C	A	SNP	AXL	NM_021913	human	genbank	54_36p	+1	reviewed	silent	c.534	p.V178	0.532	superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
DCC	1630	genome.wustl.edu	36	18	48937754	48937754	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	18	48937754	48937754	C	A	SNP	DCC	NM_005215	human	genbank	54_36p	+1	validated	missense	c.1292	p.A431D	1.000	HMMSmart_SM00409,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C	-	no_errors
ADNP	23394	genome.wustl.edu	36	20	48942970	48942970	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	20	48942970	48942970	T	C	SNP	ADNP	NM_015339	human	genbank	54_36p	-1	reviewed	missense	c.1688	p.H563R	1.000	NULL	PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
IMPDH2	3615	genome.wustl.edu	36	3	49039169	49039169	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	3	49039169	49039169	A	G	SNP	IMPDH2	NM_000884	human	genbank	54_36p	-1	reviewed	silent	c.774	p.Y258	0.999	superfamily_SSF51412,HMMPfam_IMPDH	superfamily_SSF51412,HMMPfam_IMPDH,superfamily_SSF54631,HMMPfam_CBS,HMMSmart_CBS,PatternScan_IMP_DH_GMP_RED	-	no_errors
ERO1L	30001	genome.wustl.edu	36	14	52189639	52189639	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	14	52189639	52189639	A	G	SNP	ERO1L	NM_014584	human	genbank	54_36p	-1	provisional	missense	c.953	p.V318A	1.000	superfamily_ERO1,HMMPfam_ERO1	superfamily_ERO1,HMMPfam_ERO1	-	no_errors
ITIH1	3697	genome.wustl.edu	36	3	52797312	52797312	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	3	52797312	52797312	T	C	SNP	ITIH1	NM_002215	human	genbank	54_36p	+1	validated	missense	c.2030	p.I677T	0.970	NULL	HMMSmart_SM00609,HMMPfam_VIT,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors
LRRC1	55227	genome.wustl.edu	36	6	53895464	53895464	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	6	53895464	53895464	C	T	SNP	LRRC1	NM_018214	human	genbank	54_36p	+1	validated	missense	c.1489	p.R497W	1.000	NULL	superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
CCDC155	147872	genome.wustl.edu	36	19	54590244	54590244	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	54590244	54590244	G	C	SNP	CCDC155	NM_144688	human	genbank	54_36p	+1	provisional	missense	c.218	p.R73P	0.941	NULL	NULL	-	no_errors
ZNF473	25888	genome.wustl.edu	36	19	55240106	55240106	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	55240106	55240106	G	C	SNP	ZNF473	NM_001006656	human	genbank	54_36p	+1	validated	missense	c.594	p.Q198H	0.005	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
OR5I1	10798	genome.wustl.edu	36	11	55460450	55460450	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	11	55460450	55460450	C	A	SNP	OR5I1	NM_006637	human	genbank	54_36p	-1	reviewed	missense	c.3	p.M1I	0.480	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FPR3	2359	genome.wustl.edu	36	19	57019336	57019336	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	57019336	57019336	T	A	SNP	FPR3	NM_002030	human	genbank	54_36p	+1	validated	missense	c.523	p.Y175N	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ANXA2	302	genome.wustl.edu	36	15	58440438	58440438	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	15	58440438	58440438	G	T	SNP	ANXA2	NM_001002858	human	genbank	54_36p	-1	reviewed	silent	c.405	p.S135	1.000	superfamily_Annexin,HMMPfam_Annexin	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335	-	no_errors
LOC727842	727842	genome.wustl.edu	36	6	58554306	58554306	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	6	58554306	58554306	T	C	SNP	LOC727842	XR_015140	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
CYP7A1	1581	genome.wustl.edu	36	8	59567478	59567478	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	8	59567478	59567478	G	A	SNP	CYP7A1	NM_000780	human	genbank	54_36p	-1	reviewed	silent	c.1203	p.Y401	1.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
NLRP2	55655	genome.wustl.edu	36	19	60193272	60193272	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	19	60193272	60193272	C	T	SNP	NLRP2	NM_017852	human	genbank	54_36p	+1	provisional	silent	c.2437	p.L813	0.303	superfamily_RNI-like,HMMSmart_SM00368	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
TNRC18	27320	genome.wustl.edu	36	7	62678136	62678136	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	7	62678136	62678136	A	T	SNP	TNRC18	XM_376618	human	genbank	54_36p	-1	model	missense	c.391	p.Y131N	1.000	NULL	NULL	-	pseudogene
BPTF	2186	genome.wustl.edu	36	17	63372142	63372142	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	17	63372142	63372142	C	G	SNP	BPTF	NM_182641	human	genbank	54_36p	+1	reviewed	missense	c.6856	p.Q2286E	0.693	NULL	HMMPfam_FYDLN_acid,HMMPfam_DDT,HMMSmart_DDT,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_EGF_2,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
ZWILCH	55055	genome.wustl.edu	36	15	64611729	64611729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	15	64611729	64611729	C	T	SNP	ZWILCH	NM_017975	human	genbank	54_36p	+1	validated	missense	c.1246	p.P416S	0.970	HMMPfam_DUF2352	HMMPfam_DUF2352	-	no_errors
IL26	55801	genome.wustl.edu	36	12	66905757	66905757	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	12	66905757	66905757	A	C	SNP	IL26	NM_018402	human	genbank	54_36p	-1	reviewed	missense	c.47	p.L16R	0.079	NULL	superfamily_4_helix_cytokine,HMMSmart_IL10,PatternScan_INTERLEUKIN_10,HMMPfam_IL10	-	no_errors
CYP26B1	56603	genome.wustl.edu	36	2	72224829	72224829	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	72224829	72224829	G	T	SNP	CYP26B1	NM_019885	human	genbank	54_36p	-1	reviewed	silent	c.226	p.R76	0.945	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
XIST	7503	genome.wustl.edu	36	X	72963663	72963663	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	X	72963663	72963663	C	T	SNP	XIST	NR_001564	human	genbank	54_36p	-1	reviewed	rna	NULL	NULL	0.022	-	-	-	no_errors
SHROOM3	57619	genome.wustl.edu	36	4	77880503	77880503	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	4	77880503	77880503	G	C	SNP	SHROOM3	NM_020859	human	genbank	54_36p	+1	validated	missense	c.2150	p.R717P	0.100	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	no_errors
LPAR3	23566	genome.wustl.edu	36	1	85103667	85103667	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	85103667	85103667	A	G	SNP	LPAR3	NM_012152	human	genbank	54_36p	-1	reviewed	missense	c.725	p.M242T	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC100130433	0	genome.wustl.edu	36	9	87991306	87991306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	9	87991306	87991306	C	T	SNP	LOC100130433	XM_001723202	human	genbank	54_36p	+1	model	missense	c.277	p.R93C	0.000	NULL	NULL	-	no_errors
MDN1	23195	genome.wustl.edu	36	6	90520041	90520041	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	6	90520041	90520041	T	C	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.2986	p.T996A	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327	-	no_errors
DICER1	23405	genome.wustl.edu	36	14	94662749	94662749	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	14	94662749	94662749	T	G	SNP	DICER1	NM_030621	human	genbank	54_36p	-1	reviewed	missense	c.824	p.E275A	1.000	superfamily_SSF52540	HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_DEAD,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_dsRNA_bind,HMMPfam_PAZ,superfamily_SSF101690,superfamily_RNase_III,HMMSmart_RIBOc,HMMPfam_Ribonuclease_3,PatternScan_RNASE_3_1,superfamily_SSF54768,HMMSmart_DSRM,HMMPfam_dsrm	-	no_errors
LOC648927	0	genome.wustl.edu	36	X	95114841	95114841	+	RNA	SNP	G	A	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	X	95114841	95114841	G	A	SNP	LOC648927	XR_038906	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.306	-	-	-	pseudogene
PTCH1	5727	genome.wustl.edu	36	9	97249038	97249038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	9	97249038	97249038	G	A	SNP	PTCH1	NM_000264	human	genbank	54_36p	-1	reviewed	missense	c.4321	p.P1441S	0.083	NULL	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
LASS3	204219	genome.wustl.edu	36	15	98837161	98837161	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	15	98837161	98837161	T	A	SNP	LASS3	NM_178842	human	genbank	54_36p	-1	validated	nonsense	c.511	p.K171*	0.967	HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	superfamily_Homeodomain-like,HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	-	no_errors
OR5H1	26341	genome.wustl.edu	36	3	99334940	99334940	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	3	99334940	99334940	G	T	SNP	OR5H1	NM_001005338	human	genbank	54_36p	+1	provisional	missense	c.709	p.A237S	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR4F6	390648	genome.wustl.edu	36	15	100163678	100163678	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	15	100163678	100163678	C	A	SNP	OR4F6	NM_001005326	human	genbank	54_36p	+1	provisional	missense	c.233	p.A78D	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
HNRNPH2	3188	genome.wustl.edu	36	X	100554077	100554077	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	X	100554077	100554077	G	T	SNP	HNRNPH2	NM_001032393	human	genbank	54_36p	+1	reviewed	missense	c.445	p.G149W	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_zf-RNPHF	-	no_errors
COL11A1	1301	genome.wustl.edu	36	1	103127631	103127631	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	103127631	103127631	T	A	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	missense	c.4468	p.T1490S	0.941	HMMPfam_Collagen	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors
PRPF38B	55119	genome.wustl.edu	36	1	109043849	109043849	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	109043849	109043849	G	C	SNP	PRPF38B	NM_018061	human	genbank	54_36p	+1	validated	missense	c.1325	p.R442T	1.000	NULL	HMMPfam_PRP38	-	no_errors
APC	324	genome.wustl.edu	36	5	112207571	112207571	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	5	112207571	112207571	G	T	SNP	APC	NM_000038	human	genbank	54_36p	+1	reviewed	missense	c.8381	p.S2794I	1.000	HMMPfam_EB1_binding	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113377271	113377271	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	8	113377271	113377271	G	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.8581	p.H2861N	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors
FAM70B	348013	genome.wustl.edu	36	13	113644732	113644732	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	13	113644732	113644732	C	A	SNP	FAM70B	NM_182614	human	genbank	54_36p	-1	provisional	missense	c.170	p.G57V	1.000	NULL	NULL	-	no_errors
AMPD1	270	genome.wustl.edu	36	1	115021648	115021648	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	115021648	115021648	G	A	SNP	AMPD1	NM_000036	human	genbank	54_36p	-1	reviewed	missense	c.1235	p.A412V	0.649	superfamily_SSF51556,HMMPfam_A_deaminase	superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE	-	no_errors
RFX6	222546	genome.wustl.edu	36	6	117344116	117344116	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	6	117344116	117344116	C	T	SNP	RFX6	NM_173560	human	genbank	54_36p	+1	provisional	silent	c.918	p.L306	1.000	NULL	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors
PRLHR	2834	genome.wustl.edu	36	10	120344602	120344602	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	10	120344602	120344602	G	T	SNP	PRLHR	NM_004248	human	genbank	54_36p	-1	validated	missense	c.145	p.P49T	0.046	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC647954	647954	genome.wustl.edu	36	5	122765708	122765708	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	5	122765708	122765708	C	A	SNP	LOC647954	XR_038441	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
CASR	846	genome.wustl.edu	36	3	123485245	123485245	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	3	123485245	123485245	G	T	SNP	CASR	NM_000388	human	genbank	54_36p	+1	reviewed	missense	c.1754	p.C585F	1.000	HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
C7orf45	136263	genome.wustl.edu	36	7	129643203	129643203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	7	129643203	129643203	G	A	SNP	C7orf45	NM_145268	human	genbank	54_36p	+1	validated	missense	c.392	p.R131H	0.009	NULL	NULL	-	no_errors
PLXNA4	91584	genome.wustl.edu	36	7	131520664	131520664	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	7	131520664	131520664	T	A	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	missense	c.3092	p.D1031V	1.000	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
CTGF	1490	genome.wustl.edu	36	6	132312240	132312240	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	6	132312240	132312240	C	A	SNP	CTGF	NM_001901	human	genbank	54_36p	-1	validated	missense	c.907	p.V303L	0.995	HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	HMMSmart_SM00121,HMMPfam_IGFBP,PatternScan_IGFBP_N_1,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
NUP214	8021	genome.wustl.edu	36	9	132992896	132992896	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	9	132992896	132992896	A	G	SNP	NUP214	NM_005085	human	genbank	54_36p	+1	reviewed	silent	c.210	p.Q70	0.977	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320	-	no_errors
LRRTM2	26045	genome.wustl.edu	36	5	138237435	138237435	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	5	138237435	138237435	C	T	SNP	LRRTM2	NM_015564	human	genbank	54_36p	-1	validated	nonsense	c.714	p.W238*	1.000	superfamily_L domain-like,HMMSmart_SM00369	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
KIAA0141	9812	genome.wustl.edu	36	5	141298318	141298318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	5	141298318	141298318	G	A	SNP	KIAA0141	NM_014773	human	genbank	54_36p	+1	validated	missense	c.1358	p.S453N	1.000	NULL	superfamily_SSF81901,HMMSmart_SEL1,HMMPfam_Sel1	-	no_errors
GJA8	2703	genome.wustl.edu	36	1	145846940	145846940	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	145846940	145846940	G	T	SNP	GJA8	NM_005267	human	genbank	54_36p	+1	validated	missense	c.234	p.W78C	1.000	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2,HMMPfam_Connexin50	-	no_errors
NCAPG2	54892	genome.wustl.edu	36	7	158165496	158165496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	7	158165496	158165496	C	T	SNP	NCAPG2	NM_017760	human	genbank	54_36p	-1	validated	missense	c.1063	p.V355I	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
FNIP2	0	genome.wustl.edu	36	4	160009832	160009832	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	4	160009832	160009832	T	G	SNP	FNIP2	NM_020840	human	genbank	54_36p	+1	validated	missense	c.2594	p.V865G	0.000	NULL	NULL	-	no_errors
SLC4A10	57282	genome.wustl.edu	36	2	162427761	162427761	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	162427761	162427761	C	A	SNP	SLC4A10	NM_022058	human	genbank	54_36p	+1	validated	missense	c.709	p.R237S	1.000	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_HTH_ARAC_FAMILY_1	-	no_errors
SCN7A	6332	genome.wustl.edu	36	2	166977825	166977825	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	166977825	166977825	G	A	SNP	SCN7A	NM_002976	human	genbank	54_36p	-1	validated	missense	c.3467	p.A1156V	0.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors
C4orf27	54969	genome.wustl.edu	36	4	170908397	170908397	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	4	170908397	170908397	G	C	SNP	C4orf27	NM_017867	human	genbank	54_36p	-1	validated	missense	c.263	p.A88G	1.000	HMMPfam_DUF2228	HMMPfam_DUF2228	-	no_errors
TNFSF4	7292	genome.wustl.edu	36	1	171422428	171422428	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	171422428	171422428	A	G	SNP	TNFSF4	NM_003326	human	genbank	54_36p	-1	reviewed	silent	c.402	p.S134	0.000	HMMSmart_SM00207,HMMPfam_TNF,superfamily_TNF-like	HMMSmart_SM00207,HMMPfam_TNF,superfamily_TNF-like,PatternScan_TNF_1	-	no_errors
WIPF1	7456	genome.wustl.edu	36	2	175145360	175145360	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	175145360	175145360	G	T	SNP	WIPF1	NM_001077269	human	genbank	54_36p	-1	reviewed	missense	c.419	p.P140H	0.998	NULL	HMMPfam_WH2,HMMSmart_SM00246	-	no_errors
SMG7	9887	genome.wustl.edu	36	1	181781995	181781995	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	181781995	181781995	G	A	SNP	SMG7	NM_173156	human	genbank	54_36p	+1	validated	missense	c.2642	p.R881K	0.099	NULL	HMMPfam_EST1,superfamily_TPR-like	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184350681	184350681	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	1	184350681	184350681	G	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	+1	reviewed	missense	c.11384	p.R3795Q	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_vWA-like,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00406,PatternScan_CECROPIN,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_2	-	no_errors
PGAP1	80055	genome.wustl.edu	36	2	197466115	197466115	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	197466115	197466115	A	T	SNP	PGAP1	NM_024989	human	genbank	54_36p	-1	validated	missense	c.1027	p.L343I	0.993	NULL	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases	-	no_errors
LOC729366	729366	genome.wustl.edu	36	2	206992296	206992296	+	RNA	SNP	A	A	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	206992296	206992296	A	T	SNP	LOC729366	XR_015958	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.945	-	-	-	pseudogene
DYTN	0	genome.wustl.edu	36	2	207224852	207224852	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	207224852	207224852	C	G	SNP	DYTN	NM_001093730	human	genbank	54_36p	-1	provisional	missense	c.1672	p.A558P	0.497	NULL	HMMPfam_efhand_1,superfamily_SSF47473,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237954833	237954833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	237954833	237954833	G	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.1361	p.S454F	0.245	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
EMG1	10436	genome.wustl.edu	36	12	6954707	6954709	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	CTT	CTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	12	6954707	6954709	CTT	-	DEL	EMG1	ENST00000261406	human	ensembl	54_36p	+1	known	in_frame_del	c.524_526	p.S176in_frame_del	1.000:0.978:1.000	HMMPfam_EMG1	HMMPfam_EMG1	(deletion:cds_exon[6954652,6954801])	no_errors
TP53	7157	genome.wustl.edu	36	17	7518283	7518283	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	17	7518283	7518283	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.723	p.C242fs	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7518224,7518333])	no_errors
APEX1	328	genome.wustl.edu	36	14	19995417	19995418	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	CT	CT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	14	19995417	19995418	CT	-	DEL	APEX1	NM_001641	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.867_868	p.L291fs	0.000:0.084	superfamily_DNase I-like,HMMPfam_Exo_endo_phos	superfamily_DNase I-like,HMMPfam_Exo_endo_phos,PatternScan_AP_NUCLEASE_F1_1,PatternScan_AP_NUCLEASE_F1_2,PatternScan_AP_NUCLEASE_F1_3	(deletion:cds_exon[19994990,19995507])	no_errors
CDC25A	993	genome.wustl.edu	36	3	48182184	48182209	+	Frame_Shift_Del	DEL	CTCTTTAATGAGGTTGGCAAACTTGC	CTCTTTAATGAGGTTGGCAAACTTGC	-	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	CTCTTTAATGAGGTTGGCAAACTTGC	CTCTTTAATGAGGTTGGCAAACTTGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	3	48182184	48182209	CTCTTTAATGAGGTTGGCAAACTTGC	-	DEL	CDC25A	NM_001789	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1137_1112	p.G371fs	0.979:0.991:0.994:0.994:1.000:1.000:0.999:1.000:0.992:0.738:0.736:0.629:0.420:0.388:0.390:0.443:0.651:0.665:0.938:0.999:1.000:1.000:1.000:0.998:0.991:0.993	superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450,HMMPfam_Rhodanese	HMMPfam_M-inducer_phosp,superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450,HMMPfam_Rhodanese	(deletion:cds_exon[48182130,48182228])	no_errors
FLJ39080	441355	genome.wustl.edu	36	8	75827250	75827250	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	8	75827250	75827250	A	-	DEL	FLJ39080	XM_499117	human	genbank	54_36p	+1	model	frame_shift_del	c.248	p.H83fs	0.024	NULL	NULL	(deletion:cds_exon[75827231,75827308])	no_errors
ADAM6	8755	genome.wustl.edu	36	14	105508082	105508119	+	RNA	DEL	CATGGTTTCGTTATACACAGGAGCAAGTGTTTCAAAAA	CATGGTTTCGTTATACACAGGAGCAAGTGTTTCAAAAA	-	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	CATGGTTTCGTTATACACAGGAGCAAGTGTTTCAAAAA	CATGGTTTCGTTATACACAGGAGCAAGTGTTTCAAAAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	14	105508082	105508119	CATGGTTTCGTTATACACAGGAGCAAGTGTTTCAAAAA	-	DEL	ADAM6	NR_002224	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.000:0.002:0.001:0.001:0.000:0.002:0.003:0.002:0.001:0.000:0.002:0.002:0.001:0.000:0.001:0.002:0.002:0.002:0.002:0.004:0.004:0.005:0.004:0.004:0.003:0.001:0.000:0.000:0.000:0.002:0.003:0.001:0.000:0.000:0.000:0.004:0.000:0.000	-	-	(deletion:rna[105506864,105508128])	pseudogene
SDS	10993	genome.wustl.edu	36	12	112315170	112315200	+	Frame_Shift_Del	DEL	GCGCCCGCAGCTGGGCCAGGCTGATGTTGCT	GCGCCCGCAGCTGGGCCAGGCTGATGTTGCT	-	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	GCGCCCGCAGCTGGGCCAGGCTGATGTTGCT	GCGCCCGCAGCTGGGCCAGGCTGATGTTGCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	12	112315170	112315200	GCGCCCGCAGCTGGGCCAGGCTGATGTTGCT	-	DEL	SDS	NM_006843	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.946_916	p.N307fs	0.978:0.156:0.161:0.178:0.186:0.161:0.257:0.347:0.992:1.000:1.000:0.996:0.946:0.740:0.791:0.876:0.912:0.926:0.921:0.987:0.990:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_PyrdxlP-dep_enz_bsu	superfamily_PyrdxlP-dep_enz_bsu,HMMPfam_PALP,PatternScan_DEHYDRATASE_SER_THR	(deletion:cds_exon[112315129,112315337])	no_errors
ENSG00000209231	0	genome.wustl.edu	36	4	123228212	123228226	+	RNA	DEL	TCTGACCTGGGCCAG	TCTGACCTGGGCCAG	-	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	TCTGACCTGGGCCAG	TCTGACCTGGGCCAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	4	123228212	123228226	TCTGACCTGGGCCAG	-	DEL	ENSG00000209231	ENST00000386496	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:rna[123228118,123228416])	pseudogene
LOC730085	730085	genome.wustl.edu	36	2	132778692	132778693	+	Splice_Site	INS	-	-	T	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	2	132778692	132778693	-	T	INS	LOC730085	XM_001132335	human	genbank	54_36p	-1	model	splice_site_ins	c.107+1_107+1	e1+1	0.003:0.006	-	-	-	no_errors
TBC1D9	23158	genome.wustl.edu	36	4	141819708	141819714	+	Frame_Shift_Del	DEL	TGCTCAC	TGCTCAC	-	novel	unknown	TCGA-29-1781-01A-01W-0633-09	TCGA-29-1781-10A-01W-0634-09	TGCTCAC	TGCTCAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f3b7334f-80de-4485-8457-953d995beda5	07e9e4e5-441f-4b26-9beb-ca5c5f1ad74f	4	141819708	141819714	TGCTCAC	-	DEL	TBC1D9	NM_015130	human	genbank	54_36p	-1	validated	frame_shift_del	c.689_683	p.S228fs	0.997:0.998:0.962:0.999:0.998:0.966:0.997	NULL	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand	(deletion:cds_exon[141819546,141819807])	no_errors