Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error SDK1 221935 genome.wustl.edu 36 7 3957128 3957128 + Missense_Mutation SNP C C A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 7 3957128 3957128 C A SNP SDK1 NM_152744 human genbank 54_36p +1 validated missense c.895 p.P299T 0.997 superfamily_Immunoglobulin,HMMSmart_SM00409 superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3 - no_errors C17orf74 201243 genome.wustl.edu 36 17 7270274 7270274 + Missense_Mutation SNP C C G novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 17 7270274 7270274 C G SNP C17orf74 NM_175734 human genbank 54_36p +1 validated missense c.240 p.D80E 0.000 NULL NULL - no_errors TP53 7157 genome.wustl.edu 36 17 7518276 7518276 + Missense_Mutation SNP C C T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 17 7518276 7518276 C T SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.730 p.G244S 1.000 HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53 HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain - no_errors MUC16 94025 genome.wustl.edu 36 19 8908206 8908206 + Missense_Mutation SNP G G C novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 19 8908206 8908206 G C SNP MUC16 NM_024690 human genbank 54_36p -1 validated missense c.34425 p.F11475L 0.000 NULL PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA - no_errors JAG1 182 genome.wustl.edu 36 20 10568363 10568363 + Missense_Mutation SNP G G C novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 20 10568363 10568363 G C SNP JAG1 NM_000214 human genbank 54_36p -1 reviewed missense c.3440 p.S1147C 1.000 NULL HMMPfam_MNNL,HMMPfam_DSL,HMMSmart_DSL,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF_CA,HMMPfam_EGF,superfamily_SSF57196,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_VWC - no_errors SAMSN1 64092 genome.wustl.edu 36 21 14794786 14794786 + Missense_Mutation SNP T T G novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 21 14794786 14794786 T G SNP SAMSN1 NM_022136 human genbank 54_36p -1 validated missense c.703 p.N235H 0.020 superfamily_SAM/Pointed domain superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2 - no_errors ACSM2A 123876 genome.wustl.edu 36 16 20401912 20401912 + Missense_Mutation SNP A A T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 16 20401912 20401912 A T SNP ACSM2A NM_001010845 human genbank 54_36p +1 validated missense c.1541 p.Q514L 0.001 superfamily_Acetyl-CoA synthetase-like superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING - no_errors ZP2 7783 genome.wustl.edu 36 16 21125773 21125773 + Missense_Mutation SNP T T A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 16 21125773 21125773 T A SNP ZP2 NM_003460 human genbank 54_36p -1 reviewed missense c.370 p.S124C 0.001 NULL HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1 - no_errors GSG1L 146395 genome.wustl.edu 36 16 27881991 27881991 + Silent SNP C C A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 16 27881991 27881991 C A SNP GSG1L NM_001109763 human genbank 54_36p -1 validated silent c.384 p.P128 0.984 HMMPfam_GSG-1 HMMPfam_GSG-1 - no_errors SLFN12 55106 genome.wustl.edu 36 17 30762788 30762788 + Silent SNP A G G novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 17 30762788 30762788 A G SNP SLFN12 NM_018042 human genbank 54_36p -1 validated silent c.1419 p.T473 0.137 NULL HMMPfam_AAA_4 - no_errors CSMD2 114784 genome.wustl.edu 36 1 34174063 34174063 + Missense_Mutation SNP G G T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 1 34174063 34174063 G T SNP CSMD2 NM_052896 human genbank 54_36p -1 validated missense c.477 p.D159E 1.000 superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032 superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC - no_errors RNF38 152006 genome.wustl.edu 36 9 36343241 36343241 + Missense_Mutation SNP G G C novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 9 36343241 36343241 G C SNP RNF38 NM_022781 human genbank 54_36p -1 reviewed missense c.997 p.P333A 1.000 NULL superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4 - no_errors KIF21A 55605 genome.wustl.edu 36 12 38047110 38047110 + Missense_Mutation SNP G G T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 12 38047110 38047110 G T SNP KIF21A NM_017641 human genbank 54_36p -1 validated missense c.724 p.Q242K 0.481 superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40 repeat-like,superfamily_Prefoldin,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1 - no_errors DUOXA1 90527 genome.wustl.edu 36 15 43198769 43198769 + Missense_Mutation SNP C T T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 15 43198769 43198769 C T SNP DUOXA1 NM_144565 human genbank 54_36p -1 provisional missense c.859 p.V287M 0.032 HMMPfam_DuoxA HMMPfam_DuoxA - no_errors PCIF1 63935 genome.wustl.edu 36 20 44008254 44008254 + Silent SNP C C T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 20 44008254 44008254 C T SNP PCIF1 NM_022104 human genbank 54_36p +1 validated silent c.1437 p.F479 0.994 NULL PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW - no_errors AMIGO2 347902 genome.wustl.edu 36 12 45758650 45758650 + Missense_Mutation SNP C C T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 12 45758650 45758650 C T SNP AMIGO2 NM_181847 human genbank 54_36p -1 validated missense c.403 p.A135T 0.339 superfamily_SSF52058,HMMPfam_LRR_1 HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig - no_errors COL7A1 1294 genome.wustl.edu 36 3 48604343 48604343 + Missense_Mutation SNP C C T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 3 48604343 48604343 C T SNP COL7A1 NM_000094 human genbank 54_36p -1 reviewed missense c.1349 p.R450H 0.876 HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1 - no_errors BIN2 51411 genome.wustl.edu 36 12 49979257 49979257 + Missense_Mutation SNP T T C novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 12 49979257 49979257 T C SNP BIN2 NM_016293 human genbank 54_36p -1 validated missense c.599 p.N200S 0.034 HMMSmart_SM00721,HMMPfam_BAR HMMSmart_SM00721,HMMPfam_BAR - no_errors LOC100130990 0 genome.wustl.edu 36 5 54189051 54189051 + RNA SNP A G G novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 5 54189051 54189051 A G SNP LOC100130990 XR_042331 human genbank 54_36p +1 model rna NULL NULL 0.100 - - - pseudogene LOC729789 729789 genome.wustl.edu 36 3 54635643 54635643 + Missense_Mutation SNP C C G novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 3 54635643 54635643 C G SNP LOC729789 XM_001134147 human genbank 54_36p +1 model missense c.362 p.T121S 1.000 HMMPfam_Ribosomal_S19,superfamily_Ribosomal protein S19,PatternScan_RIBOSOMAL_S19 HMMPfam_Ribosomal_S19,superfamily_Ribosomal protein S19,PatternScan_RIBOSOMAL_S19 - pseudogene OR5AS1 219447 genome.wustl.edu 36 11 55554996 55554996 + Missense_Mutation SNP C C A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 11 55554996 55554996 C A SNP OR5AS1 NM_001001921 human genbank 54_36p +1 provisional missense c.526 p.H176N 0.751 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors TMC4 147798 genome.wustl.edu 36 19 59359369 59359369 + Missense_Mutation SNP G G C novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 19 59359369 59359369 G C SNP TMC4 NM_144686 human genbank 54_36p -1 validated missense c.1176 p.I392M 1.000 NULL HMMPfam_TMC - no_errors ZNF471 57573 genome.wustl.edu 36 19 61728061 61728061 + Missense_Mutation SNP C C G novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 19 61728061 61728061 C G SNP ZNF471 NM_020813 human genbank 54_36p +1 validated missense c.813 p.F271L 0.989 superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors CDH5 1003 genome.wustl.edu 36 16 64978261 64978261 + Missense_Mutation SNP G G A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 16 64978261 64978261 G A SNP CDH5 NM_001795 human genbank 54_36p +1 reviewed missense c.259 p.E87K 0.908 superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112 superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C - no_errors MAN2C1 4123 genome.wustl.edu 36 15 73442039 73442039 + Silent SNP G G A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 15 73442039 73442039 G A SNP MAN2C1 NM_006715 human genbank 54_36p -1 validated silent c.894 p.S298 1.000 superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38 superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,HMMPfam_Glyco_hydro_38C - no_errors WDFY3 23001 genome.wustl.edu 36 4 85817418 85817418 + Missense_Mutation SNP C C A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 4 85817418 85817418 C A SNP WDFY3 NM_014991 human genbank 54_36p -1 reviewed missense c.10415 p.R3472I 0.530 HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cyclin-like,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger - no_errors CLCA4 22802 genome.wustl.edu 36 1 86798516 86798516 + Missense_Mutation SNP G G T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 1 86798516 86798516 G T SNP CLCA4 NM_012128 human genbank 54_36p +1 reviewed missense c.335 p.G112V 0.284 HMMPfam_CLCA_N HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973 - no_errors PCDH11X 27328 genome.wustl.edu 36 X 91019528 91019528 + Missense_Mutation SNP A A T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a X 91019528 91019528 A T SNP PCDH11X NM_032968 human genbank 54_36p +1 reviewed missense c.1633 p.N545Y 1.000 superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112 HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Protocadherin - no_errors LOC727938 727938 genome.wustl.edu 36 5 95196489 95196489 + RNA SNP G T T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 5 95196489 95196489 G T SNP LOC727938 XR_037516 human genbank 54_36p -1 model rna NULL NULL 0.004 - - - pseudogene LASS3 204219 genome.wustl.edu 36 15 98833881 98833881 + Missense_Mutation SNP T T A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 15 98833881 98833881 T A SNP LASS3 NM_178842 human genbank 54_36p -1 validated missense c.542 p.Y181F 1.000 HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8 superfamily_Homeodomain-like,HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8 - no_errors LOC646970 646970 genome.wustl.edu 36 1 100570019 100570019 + RNA SNP T T A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 1 100570019 100570019 T A SNP LOC646970 XR_017347 human genbank 54_36p -1 model rna NULL NULL 1.000 - - - pseudogene C9orf30 91283 genome.wustl.edu 36 9 102244052 102244052 + Missense_Mutation SNP A A G novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 9 102244052 102244052 A G SNP C9orf30 NM_080655 human genbank 54_36p +1 predicted missense c.11 p.N4S 1.000 NULL NULL - no_errors COL11A1 1301 genome.wustl.edu 36 1 103203636 103203636 + Missense_Mutation SNP G G T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 1 103203636 103203636 G T SNP COL11A1 NM_080629 human genbank 54_36p -1 reviewed missense c.2947 p.P983T 1.000 HMMPfam_Collagen HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI - no_errors RIMS2 9699 genome.wustl.edu 36 8 104991770 104991770 + Missense_Mutation SNP T T C novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 8 104991770 104991770 T C SNP RIMS2 ENST00000402998 human ensembl 54_36p +1 known missense c.1763 p.L588S 1.000 NULL superfamily_FYVE/PHD zinc finger,HMMPfam_RPH3A_effector,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2 - no_errors ENSG00000211937 0 genome.wustl.edu 36 14 105565341 105565341 + Missense_Mutation SNP G G T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 14 105565341 105565341 G T SNP ENSG00000211937 ENST00000390597 human ensembl 54_36p -1 known missense c.196 p.L66M 0.998 HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv - no_stop_codon:bad_bp_length_for_coding_region MARCO 8685 genome.wustl.edu 36 2 119416433 119416433 + Silent SNP C C T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 2 119416433 119416433 C T SNP MARCO NM_006770 human genbank 54_36p +1 reviewed silent c.87 p.F29 0.850 NULL HMMPfam_Collagen,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1 - no_errors THOC2 57187 genome.wustl.edu 36 X 122599611 122599611 + Nonsense_Mutation SNP T T A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a X 122599611 122599611 T A SNP THOC2 NM_001081550 human genbank 54_36p -1 validated nonsense c.1885 p.K629* 1.000 NULL NULL - no_errors DNAH10 196385 genome.wustl.edu 36 12 122898471 122898471 + Missense_Mutation SNP T T G novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 12 122898471 122898471 T G SNP DNAH10 ENST00000409039 human ensembl 54_36p +1 known missense c.5471 p.M1824R 1.000 superfamily_P-loop containing nucleoside triphosphate hydrolases HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy - no_errors OR1J2 26740 genome.wustl.edu 36 9 124313625 124313625 + Missense_Mutation SNP G G A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 9 124313625 124313625 G A SNP OR1J2 NM_054107 human genbank 54_36p +1 provisional missense c.724 p.G242S 0.941 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors GPR107 57720 genome.wustl.edu 36 9 131892999 131892999 + Silent SNP T T C novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 9 131892999 131892999 T C SNP GPR107 NM_020960 human genbank 54_36p +1 validated silent c.645 p.D215 0.985 HMMPfam_Lung_7-TM_R HMMPfam_Lung_7-TM_R - no_errors MOXD1 26002 genome.wustl.edu 36 6 132686919 132686919 + Silent SNP A G G novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 6 132686919 132686919 A G SNP MOXD1 NM_015529 human genbank 54_36p -1 validated silent c.957 p.D319 0.999 superfamily_PHM/PNGase F HMMSmart_SM00664,HMMPfam_DOMON,superfamily_PHM/PNGase F,HMMPfam_Cu2_monooxygen,HMMPfam_Cu2_monoox_C - no_errors POMT1 10585 genome.wustl.edu 36 9 133375129 133375129 + Silent SNP G G T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 9 133375129 133375129 G T SNP POMT1 NM_007171 human genbank 54_36p +1 reviewed silent c.624 p.V208 0.805 HMMPfam_PMT HMMPfam_PMT,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR - no_errors ADAMTSL2 9719 genome.wustl.edu 36 9 135395644 135395644 + Silent SNP G G A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 9 135395644 135395644 G A SNP ADAMTSL2 NM_014694 human genbank 54_36p +1 reviewed silent c.516 p.K172 1.000 NULL superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC - no_errors TAS2R41 259287 genome.wustl.edu 36 7 142885996 142885996 + Silent SNP C C T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 7 142885996 142885996 C T SNP TAS2R41 NM_176883 human genbank 54_36p +1 provisional silent c.909 p.G303 0.040 NULL HMMPfam_TAS2R,superfamily_SSF81321 - no_errors AFF2 2334 genome.wustl.edu 36 X 147551369 147551369 + Silent SNP A A T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a X 147551369 147551369 A T SNP AFF2 NM_002025 human genbank 54_36p +1 validated silent c.429 p.I143 0.960 HMMPfam_AF-4 HMMPfam_AF-4 - no_errors MLL3 58508 genome.wustl.edu 36 7 151535362 151535362 + Missense_Mutation SNP C C A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 7 151535362 151535362 C A SNP MLL3 NM_170606 human genbank 54_36p -1 reviewed missense c.3797 p.G1266V 0.999 NULL PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508 - no_errors SPRY3 10251 genome.wustl.edu 36 X 154657156 154657156 + Missense_Mutation SNP C C A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a X 154657156 154657156 C A SNP SPRY3 NM_005840 human genbank 54_36p +1 validated missense c.429 p.H143Q 1.000 NULL HMMPfam_Sprouty - no_errors BAZ2B 29994 genome.wustl.edu 36 2 159963623 159963623 + Missense_Mutation SNP G G T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 2 159963623 159963623 G T SNP BAZ2B NM_013450 human genbank 54_36p -1 validated missense c.2927 p.A976E 1.000 NULL superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1 - no_errors UNC5A 90249 genome.wustl.edu 36 5 176229984 176229984 + Silent SNP C T T novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 5 176229984 176229984 C T SNP UNC5A NM_133369 human genbank 54_36p +1 validated silent c.729 p.G243 1.000 superfamily_TSP1 superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death - no_errors LOC131054 131054 genome.wustl.edu 36 3 181525493 181525493 + RNA SNP A A C novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 3 181525493 181525493 A C SNP LOC131054 XR_017452 human genbank 54_36p +1 model rna NULL NULL 0.996 - - - pseudogene TMEM44 93109 genome.wustl.edu 36 3 195795066 195795066 + Missense_Mutation SNP G G A novel unknown TCGA-29-1707-01A-01W-0633-09 TCGA-29-1707-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx db789a5f-7121-4c07-9318-69b20a09b845 b8634be5-d88b-44bc-8b90-2ace472f3a2a 3 195795066 195795066 G A SNP TMEM44 NM_138399 human genbank 54_36p -1 validated missense c.1202 p.S401L 0.997 NULL NULL - no_errors