Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID RABGGTB 5876 broad.mit.edu 36 1 76032914 76032914 + Silent SNP A A G novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 ARHGAP29 9411 broad.mit.edu 36 1 94417975 94417975 + Missense_Mutation SNP T T C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 RABGAP1L 9910 broad.mit.edu 36 1 173193654 173193654 + Missense_Mutation SNP G G C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 ANKRD30A 91074 broad.mit.edu 36 10 37470980 37470980 + Silent SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 MADD 8567 broad.mit.edu 36 11 47289922 47289922 + Missense_Mutation SNP G G C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 OR4C15 81309 broad.mit.edu 36 11 55079253 55079253 + Missense_Mutation SNP G G C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 MTA2 9219 broad.mit.edu 36 11 62122408 62122408 + Missense_Mutation SNP C C A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 GALNT6 11226 broad.mit.edu 36 12 50034495 50034495 + Missense_Mutation SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 SMARCC2 6601 broad.mit.edu 36 12 54854765 54854765 + Missense_Mutation SNP T T A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 GPR109B 8843 broad.mit.edu 36 12 121766190 121766190 + Missense_Mutation SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 NFATC4 4776 broad.mit.edu 36 14 23908629 23908629 + Missense_Mutation SNP C C A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 MGA 23269 broad.mit.edu 36 15 39839925 39839925 + Missense_Mutation SNP G G A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 DENND4A 10260 broad.mit.edu 36 15 63831868 63831868 + Missense_Mutation SNP G G A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 SPAG7 9552 broad.mit.edu 36 17 4803656 4803656 + Missense_Mutation SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 TXNDC17 84817 broad.mit.edu 36 17 6486997 6486997 + Silent SNP T T G novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 TP53 7157 broad.mit.edu 36 17 7518901 7518901 + Splice_Site SNP C C A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 MKS1 54903 broad.mit.edu 36 17 53638477 53638477 + Nonsense_Mutation SNP G G A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 LAMA3 3909 broad.mit.edu 36 18 19656271 19656271 + Missense_Mutation SNP A A C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 SCN1B 6324 broad.mit.edu 36 19 40216445 40216445 + Missense_Mutation SNP G G A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 SBSN 374897 broad.mit.edu 36 19 40709533 40709533 + Silent SNP C C A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 ZFP28 140612 broad.mit.edu 36 19 61751016 61751016 + Missense_Mutation SNP C C G novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 SOS1 6654 broad.mit.edu 36 2 39066923 39066923 + Missense_Mutation SNP G G C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 MAP3K2 10746 broad.mit.edu 36 2 127799790 127799790 + Missense_Mutation SNP C C G novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 XIRP2 129446 broad.mit.edu 36 2 167811897 167811897 + Missense_Mutation SNP C C A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 ZNF804A 91752 broad.mit.edu 36 2 185509004 185509004 + Silent SNP C C A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 ADA 100 broad.mit.edu 36 20 42684907 42684907 + Missense_Mutation SNP G G A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 IL5RA 3568 broad.mit.edu 36 3 3112080 3112080 + Missense_Mutation SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 HTR1F 3355 broad.mit.edu 36 3 88123278 88123278 + Missense_Mutation SNP T T A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 ZNF718 255403 broad.mit.edu 36 4 145481 145481 + Missense_Mutation SNP G G C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 SKP2 6502 broad.mit.edu 36 5 36212823 36212823 + Splice_Site SNP G G C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 CMYA5 202333 broad.mit.edu 36 5 79069509 79069509 + Silent SNP A A G novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 ADAMTS19 171019 broad.mit.edu 36 5 129047732 129047732 + Missense_Mutation SNP G G C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 GFOD1 54438 broad.mit.edu 36 6 13473721 13473721 + Missense_Mutation SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 RPL10A 4736 broad.mit.edu 36 6 35544190 35544190 + Missense_Mutation SNP A A G novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 IBTK 25998 broad.mit.edu 36 6 82980899 82980899 + Silent SNP G G A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 EPHA7 2045 broad.mit.edu 36 6 94035998 94035998 + Silent SNP A A T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 POPDC3 64208 broad.mit.edu 36 6 105713131 105713131 + Silent SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 GJA1 2697 broad.mit.edu 36 6 121810772 121810772 + Missense_Mutation SNP C C A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 STX11 8676 broad.mit.edu 36 6 144549920 144549920 + Missense_Mutation SNP G G A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 PKD1L1 168507 broad.mit.edu 36 7 47910608 47910608 + Missense_Mutation SNP A A C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 SAMD9L 219285 broad.mit.edu 36 7 92599149 92599149 + Nonsense_Mutation SNP C C A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 EMID2 136227 broad.mit.edu 36 7 100983345 100983345 + Missense_Mutation SNP G G T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 ST18 9705 broad.mit.edu 36 8 53234147 53234147 + Missense_Mutation SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 CTPS2 56474 broad.mit.edu 36 X 16606455 16606455 + Missense_Mutation SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 WAS 7454 broad.mit.edu 36 X 48432310 48432310 + Missense_Mutation SNP C C T novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 NONO 4841 broad.mit.edu 36 X 70431090 70431090 + Missense_Mutation SNP T T C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 DACH2 117154 broad.mit.edu 36 X 85836795 85836795 + Silent SNP T T A novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519 FMR1NB 158521 broad.mit.edu 36 X 146897883 146897883 + Missense_Mutation SNP G G C novel none TCGA-25-2400-01A-01W-0799-08 TCGA-25-2400-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx adb8f8a4-e295-4f73-b2c3-ab19b7c23818 91399754-6480-4f3a-b1a7-20aa32880519