Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID THRAP3 9967 broad.mit.edu 36 1 36527639 36527639 + Missense_Mutation SNP C C A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 KCNA10 3744 broad.mit.edu 36 1 110862799 110862799 + Missense_Mutation SNP G G A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 GON4L 54856 broad.mit.edu 36 1 153993394 153993394 + Silent SNP G G A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 FMN2 56776 broad.mit.edu 36 1 238418141 238418141 + Missense_Mutation SNP G G C novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 ATM 472 broad.mit.edu 36 11 107705108 107705108 + Nonsense_Mutation SNP C C T novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 CD163L1 283316 broad.mit.edu 36 12 7476563 7476563 + Missense_Mutation SNP T T C novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 ABCC9 10060 broad.mit.edu 36 12 21851660 21851660 + Missense_Mutation SNP C C A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 FAM113B 91523 broad.mit.edu 36 12 45916217 45916217 + Silent SNP C C T novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 KRT4 3851 broad.mit.edu 36 12 51493696 51493696 + Silent SNP G G A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 KRT8 3856 broad.mit.edu 36 12 51579919 51579919 + Silent SNP G G A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 IQCD 115811 broad.mit.edu 36 12 112129788 112129788 + Silent SNP C C T novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 RNF6 6049 broad.mit.edu 36 13 25687649 25687649 + Missense_Mutation SNP T T C novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 OR11G2 390439 broad.mit.edu 36 14 19735809 19735809 + Missense_Mutation SNP G G C novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 PRKD1 5587 broad.mit.edu 36 14 29177679 29177679 + Silent SNP C C G novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 SERPINA3 12 broad.mit.edu 36 14 94159877 94159877 + Missense_Mutation SNP C C G novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 ZKSCAN2 342357 broad.mit.edu 36 16 25165606 25165606 + Missense_Mutation SNP T T A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 PHKB 5257 broad.mit.edu 36 16 46180502 46180502 + Silent SNP A A G novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 CDH3 1001 broad.mit.edu 36 16 67283312 67283312 + Missense_Mutation SNP G G A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 KIAA1609 57707 broad.mit.edu 36 16 83077936 83077936 + Missense_Mutation SNP T T C novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 TP53 7157 broad.mit.edu 36 17 7519131 7519131 + Missense_Mutation SNP C C T rs28934578 unknown TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 NCOR1 9611 broad.mit.edu 36 17 15936019 15936019 + Missense_Mutation SNP T T C novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 CACNA1A 773 broad.mit.edu 36 19 13202003 13202003 + Silent SNP G G A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 RYR1 6261 broad.mit.edu 36 19 43672619 43672619 + Missense_Mutation SNP G G T novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 PSG7 5676 broad.mit.edu 36 19 48125533 48125533 + Missense_Mutation SNP G G T novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 KIR3DL1 3811 broad.mit.edu 36 19 60023210 60023210 + Missense_Mutation SNP T T G novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 PXDN 7837 broad.mit.edu 36 2 1649200 1649200 + Missense_Mutation SNP C C G novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 TTN 7273 broad.mit.edu 36 2 179150626 179150626 + Missense_Mutation SNP T T C novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 GIGYF2 26058 broad.mit.edu 36 2 233364332 233364332 + Missense_Mutation SNP C C T novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 ZBP1 81030 broad.mit.edu 36 20 55621672 55621672 + Missense_Mutation SNP A A G novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 CACNA1D 776 broad.mit.edu 36 3 53728820 53728820 + Splice_Site SNP A A G novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 LRRC31 79782 broad.mit.edu 36 3 171061052 171061052 + Missense_Mutation SNP G G C novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 KIAA1211 57482 broad.mit.edu 36 4 56876077 56876077 + Missense_Mutation SNP C C G novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 ABLIM3 22885 broad.mit.edu 36 5 148576783 148576783 + Silent SNP A A T novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 IGF2R 3482 broad.mit.edu 36 6 160430178 160430178 + Missense_Mutation SNP G G A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 ELN 2006 broad.mit.edu 36 7 73107035 73107035 + Missense_Mutation SNP G G A novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 MUC17 140453 broad.mit.edu 36 7 100471957 100471957 + Nonsense_Mutation SNP G G T novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448 MPDZ 8777 broad.mit.edu 36 9 13196068 13196068 + Missense_Mutation SNP T T C novel none TCGA-25-2399-01A-01W-0799-08 TCGA-25-2399-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 81db8053-94a3-4b15-ab83-ff16a77c7352 e6de10f2-fd09-4157-9cae-ce5b123cd448