Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACSL4 2182 hgsc.bcm.edu 36 X 108810946 108810946 + Missense_Mutation SNP G G T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 APLF 200558 hgsc.bcm.edu 36 2 68594309 68594309 + Silent SNP C C T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 BRCA1 672 hgsc.bcm.edu 36 17 38499517 38499517 + Frame_Shift_Del DEL C C - novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 FCGBP 8857 hgsc.bcm.edu 36 19 45100661 45100661 + Missense_Mutation SNP C G G rs45613437 TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 MEOX2 4223 hgsc.bcm.edu 36 7 15618640 15618640 + Missense_Mutation SNP T T G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 PAMR1 25891 hgsc.bcm.edu 36 11 35414034 35414034 + Nonsense_Mutation SNP G G T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 PDZD7 79955 hgsc.bcm.edu 36 10 102770424 102770424 + Missense_Mutation SNP T T C novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 PGAP3 93210 hgsc.bcm.edu 36 17 35097631 35097631 + Missense_Mutation SNP T T C novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 PGR 5241 hgsc.bcm.edu 36 11 100427471 100427471 + Missense_Mutation SNP T T A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 STX5 6811 hgsc.bcm.edu 36 11 62355160 62355161 + Frame_Shift_Ins INS - - G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 TOR1AIP1 26092 hgsc.bcm.edu 36 1 178153307 178153307 + Missense_Mutation SNP C C A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 TP53 7157 hgsc.bcm.edu 36 17 7519138 7519138 + Missense_Mutation SNP C C A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 TP53 7157 hgsc.bcm.edu 36 17 7519192 7519192 + Missense_Mutation SNP T T C novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 TRIO 7204 hgsc.bcm.edu 36 5 14535753 14535753 + Missense_Mutation SNP T T A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 ADCY2 108 hgsc.bcm.edu 36 5 7765980 7765980 + Missense_Mutation SNP G G T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 ATG3 64422 hgsc.bcm.edu 36 3 113751742 113751742 + Missense_Mutation SNP C C G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 BEND3 57673 hgsc.bcm.edu 36 6 107496760 107496760 + Silent SNP C C T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 C11orf63 79864 hgsc.bcm.edu 36 11 122261782 122261782 + Missense_Mutation SNP A A T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 CAT 847 hgsc.bcm.edu 36 11 34439404 34439404 + Missense_Mutation SNP C C T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 CCNH 902 hgsc.bcm.edu 36 5 86736503 86736503 + Silent SNP C C T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 CHD1L 9557 hgsc.bcm.edu 36 1 145222748 145222748 + Silent SNP T T C novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 CORO2A 7464 hgsc.bcm.edu 36 9 99928679 99928679 + Missense_Mutation SNP T T A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 FOSB 2354 hgsc.bcm.edu 36 19 50665777 50665777 + Silent SNP C C G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 GCKR 2646 hgsc.bcm.edu 36 2 27583621 27583621 + Missense_Mutation SNP G G A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 GPRIN3 285513 hgsc.bcm.edu 36 4 90388256 90388256 + Missense_Mutation SNP G G C novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 HEATR1 55127 hgsc.bcm.edu 36 1 234823964 234823964 + Silent SNP C C A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 HS6ST3 266722 hgsc.bcm.edu 36 13 96282995 96282995 + Missense_Mutation SNP G G A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 IQWD1 55827 hgsc.bcm.edu 36 1 166299619 166299619 + Missense_Mutation SNP A A G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 KDELC1 79070 hgsc.bcm.edu 36 13 102239516 102239516 + Silent SNP C C T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 KIF7 374654 hgsc.bcm.edu 36 15 87989647 87989647 + Silent SNP G G A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 PRSS27 83886 hgsc.bcm.edu 36 16 2703552 2703552 + Missense_Mutation SNP C C G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 SLAMF7 57823 hgsc.bcm.edu 36 1 158984742 158984742 + Missense_Mutation SNP C C A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 SPATA18 132671 hgsc.bcm.edu 36 4 52630789 52630789 + Silent SNP G G C novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 SPRED1 161742 hgsc.bcm.edu 36 15 36430643 36430643 + Missense_Mutation SNP A A C novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 A A A C A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 TEX15 56154 hgsc.bcm.edu 36 8 30822741 30822741 + Missense_Mutation SNP C C G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 TRIM40 135644 hgsc.bcm.edu 36 6 30223553 30223553 + Silent SNP C C G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 WDR13 64743 hgsc.bcm.edu 36 X 48342266 48342266 + Missense_Mutation SNP C C T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 YY1AP1 55249 hgsc.bcm.edu 36 1 153896254 153896254 + Missense_Mutation SNP C C G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 APEX1 328 hgsc.bcm.edu 36 14 19995274 19995274 + Nonsense_Mutation SNP G G T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 EPS8L3 79574 hgsc.bcm.edu 36 1 110103248 110103248 + Missense_Mutation SNP C C A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 FCRL3 115352 hgsc.bcm.edu 36 1 155932605 155932605 + Missense_Mutation SNP T T A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 HMCN1 83872 hgsc.bcm.edu 36 1 184145146 184145146 + Missense_Mutation SNP A A G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 HUWE1 10075 hgsc.bcm.edu 36 X 53672270 53672270 + Missense_Mutation SNP G G T novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 NALCN 259232 hgsc.bcm.edu 36 13 100827077 100827077 + Missense_Mutation SNP A A G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 TINAG 27283 hgsc.bcm.edu 36 6 54299591 54299591 + Missense_Mutation SNP G G A novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524 ZNF277 11179 hgsc.bcm.edu 36 7 111745520 111745520 + Missense_Mutation SNP T T G novel TCGA-25-1630-01A-01W-0615-10 TCGA-25-1630-10A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e1e35024-4f59-48ef-b182-ce2db6333e19 3cee65ce-31fe-40a3-85b7-fda7f7007524