Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA1 19 hgsc.bcm.edu 36 9 106600521 106600521 + Splice_Site SNP A A G novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 CYP2C18 1562 hgsc.bcm.edu 36 10 96437884 96437884 + Missense_Mutation SNP G G C novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 DST 667 hgsc.bcm.edu 36 6 56578744 56578744 + Missense_Mutation SNP C C A novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 EIF2B5 8893 hgsc.bcm.edu 36 3 185343073 185343073 + Nonsense_Mutation SNP C C T novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 ENPEP 2028 hgsc.bcm.edu 36 4 111654086 111654086 + Missense_Mutation SNP C C G novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 FAT4 79633 hgsc.bcm.edu 36 4 126556002 126556002 + Missense_Mutation SNP T T A novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 ITK 3702 hgsc.bcm.edu 36 5 156608548 156608548 + Missense_Mutation SNP C C G novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 LAMA2 3908 hgsc.bcm.edu 36 6 129678646 129678646 + Missense_Mutation SNP C C T novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 NLRP5 126206 hgsc.bcm.edu 36 19 61206934 61206934 + Missense_Mutation SNP C C T novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 PLG 5340 hgsc.bcm.edu 36 6 161063580 161063580 + Missense_Mutation SNP A A T novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 RFC4 5984 hgsc.bcm.edu 36 3 188005153 188005153 + Missense_Mutation SNP G G A novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 ST8SIA1 6489 hgsc.bcm.edu 36 12 22331487 22331487 + Missense_Mutation SNP T T C novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 ZNF468 90333 hgsc.bcm.edu 36 19 58037109 58037109 + Missense_Mutation SNP C C G novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 ZNF615 284370 hgsc.bcm.edu 36 19 57187994 57187994 + Missense_Mutation SNP G G C novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 ZNF665 79788 hgsc.bcm.edu 36 19 58361388 58361388 + Missense_Mutation SNP G G A novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 ANKRD17 26057 hgsc.bcm.edu 36 4 74169941 74169941 + Missense_Mutation SNP G G C novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 APITD1 378708 hgsc.bcm.edu 36 1 10416506 10416506 + Missense_Mutation SNP C C G novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 CDH2 1000 hgsc.bcm.edu 36 18 23817001 23817001 + Missense_Mutation SNP C C G novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 CENPE 1062 hgsc.bcm.edu 36 4 104288119 104288119 + Missense_Mutation SNP A A G novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 DSG4 147409 hgsc.bcm.edu 36 18 27210904 27210904 + Missense_Mutation SNP T T C novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 EPHA3 2042 hgsc.bcm.edu 36 3 89342031 89342031 + Missense_Mutation SNP T T A novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 KIAA1409 57578 hgsc.bcm.edu 36 14 93158792 93158792 + Missense_Mutation SNP A A T novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 LCT 3938 hgsc.bcm.edu 36 2 136282945 136282945 + Nonsense_Mutation SNP G G A novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 LTF 4057 hgsc.bcm.edu 36 3 46472432 46472432 + Missense_Mutation SNP C C G novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 MAN1A1 4121 hgsc.bcm.edu 36 6 119552572 119552572 + Missense_Mutation SNP C C A novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 MUC16 94025 hgsc.bcm.edu 36 19 8934806 8934806 + Nonsense_Mutation SNP G G C novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 PHB2 11331 hgsc.bcm.edu 36 12 6949659 6949659 + Missense_Mutation SNP A A T novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 TMEM59L 25789 hgsc.bcm.edu 36 19 18590060 18590060 + Missense_Mutation SNP G G T novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 TOP2A 7153 hgsc.bcm.edu 36 17 35810369 35810369 + Missense_Mutation SNP C C T novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117 TP53 7157 hgsc.bcm.edu 36 17 7518990 7518990 + Missense_Mutation SNP A G G novel TCGA-25-1325-01A-01W-0490-10 TCGA-25-1325-10A-01W-0490-10 A A G G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 71809b02-7286-4987-8431-11bd6a69c679 7e7a382a-7021-4725-8a84-30bc838ea117