Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error CFHR4 10877 genome.wustl.edu 36 1 195138355 195138355 + Silent SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 1 195138355 195138355 G A SNP CFHR4 NM_006684 human genbank 54_36p 1 validated silent c.243 p.T81 0.001 NULL - - no_errors LOC728973 728973 genome.wustl.edu 36 1 231491760 231491760 + RNA SNP G G T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 1 231491760 231491760 G T SNP LOC728973 XR_015809 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene SRRM1 10250 genome.wustl.edu 36 1 24850623 24850623 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 1 24850623 24850623 A G SNP SRRM1 NM_005839 human genbank 54_36p 1 validated missense c.658 p.T220A 0.82 NULL - - no_errors RNF220 55182 genome.wustl.edu 36 1 44650891 44650891 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 1 44650891 44650891 G A SNP RNF220 NM_018150 human genbank 54_36p 1 validated missense c.535 p.V179I 1 NULL - - no_errors CAMK1D 57118 genome.wustl.edu 36 10 12898306 12898306 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 10 12898306 12898306 C T SNP CAMK1D NM_153498 human genbank 54_36p 1 reviewed missense c.806 p.T269M 0.995 HMMPfam_Pkinase HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like) - no_errors PTPN5 84867 genome.wustl.edu 36 11 18707988 18707988 + Missense_Mutation SNP A A T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 11 18707988 18707988 A T SNP PTPN5 ENST00000396166 human ensembl 54_36p -1 known missense c.101 p.L34Q 0 NULL - - no_errors FIBP 9158 genome.wustl.edu 36 11 65408520 65408520 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 11 65408520 65408520 C T SNP FIBP NM_198897 human genbank 54_36p -1 reviewed missense c.944 p.R315H 1 NULL - - no_errors PYROXD1 79912 genome.wustl.edu 36 12 21507026 21507026 + Missense_Mutation SNP G G C novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 12 21507026 21507026 G C SNP PYROXD1 NM_024854 human genbank 54_36p 1 validated missense c.1079 p.C360S 1 NULL - - no_errors KIF21A 55605 genome.wustl.edu 36 12 37981704 37981704 + Silent SNP C C A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 12 37981704 37981704 C A SNP KIF21A NM_017641 human genbank 54_36p -1 validated silent c.4737 p.V1579 0.194 NULL - - no_errors LOC100131403 100131403 genome.wustl.edu 36 12 48631219 48631219 + Missense_Mutation SNP C T T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 12 48631219 48631219 C T SNP LOC100131403 XM_001718330 human genbank 54_36p -1 model missense c.511 p.A171T 0.857 NULL - - no_errors SCN8A 6334 genome.wustl.edu 36 12 50386588 50386588 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 12 50386588 50386588 A G SNP SCN8A NM_014191 human genbank 54_36p 1 validated missense c.1457 p.K486R 1 NULL HMMPfam_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_EF-hand,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Voltage-gated potassium channels - no_errors OR10A7 121364 genome.wustl.edu 36 12 53901945 53901945 + Silent SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 12 53901945 53901945 C T SNP OR10A7 NM_001005280 human genbank 54_36p 1 provisional silent c.870 p.Y290 1 NULL - - no_errors NAV3 89795 genome.wustl.edu 36 12 77040268 77040268 + Silent SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 12 77040268 77040268 G A SNP NAV3 NM_014903 human genbank 54_36p 1 validated silent c.4167 p.L1389 1 NULL HMMPfam_CH,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors MYO16 23026 genome.wustl.edu 36 13 108338817 108338817 + Missense_Mutation SNP A A T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 13 108338817 108338817 A T SNP MYO16 NM_015011 human genbank 54_36p 1 validated missense c.1584 p.R528S 0.985 HMMPfam_Myosin_head HMMPfam_IQ,HMMPfam_Myosin_head,HMMPfam_Ank,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors STOML3 161003 genome.wustl.edu 36 13 38439003 38439003 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 13 38439003 38439003 C T SNP STOML3 NM_145286 human genbank 54_36p -1 validated missense c.835 p.V279I 0.001 NULL - - no_errors DGKH 160851 genome.wustl.edu 36 13 41691919 41691919 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 13 41691919 41691919 G A SNP DGKH NM_178009 human genbank 54_36p 1 reviewed missense c.3431 p.S1144N 1 NULL HMMPfam_DAGK_acc,HMMPfam_DAGK_cat,HMMPfam_PH,HMMPfam_C1_1,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_PH domain-like,superfamily_Cysteine-rich domain - no_errors SLITRK5 26050 genome.wustl.edu 36 13 87127446 87127446 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 13 87127446 87127446 C A SNP SLITRK5 NM_015567 human genbank 54_36p 1 validated missense c.1802 p.T601N 0.897 NULL HMMPfam_LRRNT,HMMPfam_LRR_1,superfamily_L domain-like - no_errors C15orf33 196951 genome.wustl.edu 36 15 47621290 47621290 + Silent SNP A A G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 15 47621290 47621290 A G SNP C15orf33 NM_152647 human genbank 54_36p -1 validated silent c.753 p.Y251 0.993 NULL - - no_errors UNC13C 440279 genome.wustl.edu 36 15 52647435 52647435 + Missense_Mutation SNP A A C novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 15 52647435 52647435 A C SNP UNC13C NM_001080534 human genbank 54_36p 1 provisional missense c.6104 p.Q2035P 1 NULL - - no_errors MNS1 55329 genome.wustl.edu 36 15 54508658 54508658 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 15 54508658 54508658 A G SNP MNS1 NM_018365 human genbank 54_36p -1 reviewed missense c.1421 p.I474T 0.982 NULL - - no_errors MT1M 4499 genome.wustl.edu 36 16 55224761 55224761 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 16 55224761 55224761 T C SNP MT1M NM_176870 human genbank 54_36p 1 validated missense c.37 p.C13R 0.982 NULL - - no_errors LRRC50 123872 genome.wustl.edu 36 16 82745725 82745725 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 16 82745725 82745725 G A SNP LRRC50 NM_178452 human genbank 54_36p 1 validated missense c.395 p.R132H 1 NULL HMMPfam_LRR_1,superfamily_Outer arm dynein light chain 1 - no_errors SYNRG 11276 genome.wustl.edu 36 17 32976327 32976327 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 17 32976327 32976327 G A SNP AP1GBP1 NM_007247 human genbank 54_36p -1 reviewed missense c.3062 p.S1021L 0.083 NULL superfamily_EF-hand - no_errors CDK12 51755 genome.wustl.edu 36 17 34921343 34921343 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A G A A Verified Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 17 34921343 34921343 A G SNP CRKRS NM_016507 human genbank 54_36p 1 validated missense c.2702 p.Y901C 1 HMMPfam_Pkinase Pkinase;HMMPfam_Pkinase - no_errors TP53 7157 genome.wustl.edu 36 17 7518960 7518960 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 T T T C T T Verified Valid Somatic Phase_III PCR 454_PCR_WGA dbGAP ABI 3730xl 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 17 7518960 7518960 T C SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.614 p.Y205C 0.97 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors ZNF675 171392 genome.wustl.edu 36 19 23628887 23628887 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 19 23628887 23628887 A G SNP ZNF675 NM_138330 human genbank 54_36p -1 validated missense c.688 p.C230R 0.11 NULL HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers - no_errors PSG6 5675 genome.wustl.edu 36 19 48103123 48103123 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 19 48103123 48103123 C T SNP PSG6 NM_002782 human genbank 54_36p -1 provisional missense c.1031 p.R344H 0.014 NULL - - no_errors ZNF525 170958 genome.wustl.edu 36 19 58576422 58576422 + RNA SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 19 58576422 58576422 C T SNP ZNF525 NR_003699 human genbank 54_36p 1 validated rna NULL NULL 0 - - - pseudogene MUC16 94025 genome.wustl.edu 36 19 8936296 8936296 + Missense_Mutation SNP T A T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 T T A T T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 19 8936296 8936296 T A SNP MUC16 NM_024690 human genbank 54_36p -1 validated missense c.12150 p.E4050D NULL HMMPfam_SEA;superfamily_Immunoglobulin;superfamily_SEA domain - no_errors POTEF 728378 genome.wustl.edu 36 2 130549478 130549478 + Silent SNP A A G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 2 130549478 130549478 A G SNP POTEF NM_001099771 human genbank 54_36p -1 validated silent c.2037 p.D679 0 NULL - - no_errors GRB14 2888 genome.wustl.edu 36 2 165112482 165112482 + Silent SNP G A G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G A G G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 2 165112482 165112482 G A SNP GRB14 NM_004490 human genbank 54_36p -1 reviewed silent c.415 p.L139 1 HMMPfam_RA RA;HMMPfam_RA;SH2;HMMPfam_SH2;PH;HMMPfam_PH;BPS;HMMPfam_BPS - no_errors TTN 7273 genome.wustl.edu 36 2 179190353 179190355 + In_Frame_Del DEL CTT CTT - novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 CTT CTT CTT - CTT CTT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 2 179190353 179190355 CTT - DEL TTN NM_133378 human genbank 54_36p -1 reviewed in_frame_del c.40000_39998 p.E13333in_frame_del 1.000:0.904:1.000 NULL - (deletion:cds_exon[179190297,179190484]) pseudogene:no_stop_codon:bad_bp_length_for_coding_region PPIL3 53938 genome.wustl.edu 36 2 201460795 201460795 + Splice_Site SNP C C T Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 2 201460795 201460795 C T SNP PPIL3 NM_131916 human genbank 54_36p -1 reviewed splice_site c.1-1 e1-1 0.001 - - - no_errors RPL37A 6168 genome.wustl.edu 36 2 217072952 217072952 + Silent SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 2 217072952 217072952 C T SNP RPL37A NM_000998 human genbank 54_36p 1 reviewed silent c.168 p.H56 1 NULL - - no_errors DOCK10 55619 genome.wustl.edu 36 2 225378178 225378178 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 2 225378178 225378178 G A SNP DOCK10 NM_014689 human genbank 54_36p -1 validated missense c.4040 p.T1347M 1 NULL - - no_errors LHCGR 3973 genome.wustl.edu 36 2 48768857 48768857 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 2 48768857 48768857 A G SNP LHCGR NM_000233 human genbank 54_36p -1 reviewed missense c.1583 p.I528T 1 HMMPfam_7tm_1 HMMPfam_7tm_1;superfamily_L domain-like;superfamily_Family A G protein-coupled receptor-like - no_errors LOC100130746 100130746 genome.wustl.edu 36 5 24206973 24206973 + RNA SNP T T A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 5 24206973 24206973 T A SNP LOC100130746 XR_038810 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene SIGLEC14 100049587 genome.wustl.edu 36 19 56841005 56841005 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 19 56841005 56841005 G A SNP SIGLEC14 NM_001098612 human genbank 54_36p -1 validated missense c.542 p.T181M 0.003 NULL - - no_errors KCND2 3751 genome.wustl.edu 36 7 119702341 119702341 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 7 119702341 119702341 G A SNP KCND2 NM_012281 human genbank 54_36p 1 reviewed missense c.419 p.R140H 0.995 NULL HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels - no_errors RAPGEF5 9771 genome.wustl.edu 36 7 22314494 22314494 + Silent SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 7 22314494 22314494 G A SNP RAPGEF5 NM_012294 human genbank 54_36p -1 validated silent c.210 p.G70 0.945 NULL - - no_errors DPY19L2P1 554236 genome.wustl.edu 36 7 35097826 35097826 + RNA SNP C C G novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 7 35097826 35097826 C G SNP DPY19L2P1 NR_002833 human genbank 54_36p -1 provisional rna NULL NULL 0.001 - - - pseudogene PHTF2 57157 genome.wustl.edu 36 7 77389987 77389987 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 7 77389987 77389987 C T SNP PHTF2 NM_020432 human genbank 54_36p 1 validated missense c.1075 p.R359W 1 NULL - - no_errors AKNA 80709 genome.wustl.edu 36 9 116179491 116179491 + Silent SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 9 116179491 116179491 C T SNP AKNA NM_030767 human genbank 54_36p -1 validated silent c.417 p.E139 0.115 NULL - - no_errors UAP1L1 91373 genome.wustl.edu 36 9 139096287 139096287 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 9 139096287 139096287 G A SNP UAP1L1 NM_207309 human genbank 54_36p 1 validated missense c.1012 p.D338N 0.953 NULL - - no_errors KIAA1797 54914 genome.wustl.edu 36 9 20705367 20705367 + Silent SNP C C A novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 9 20705367 20705367 C A SNP KIAA1797 NM_017794 human genbank 54_36p 1 validated silent c.15 p.I5 1 NULL HMMPfam_HEAT,superfamily_ARM repeat - no_errors AGTPBP1 23287 genome.wustl.edu 36 9 87477343 87477343 + Silent SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 9 87477343 87477343 C T SNP AGTPBP1 NM_015239 human genbank 54_36p -1 validated silent c.510 p.L170 1 NULL HMMPfam_Peptidase_M14,superfamily_ARM repeat,superfamily_Zn-dependent exopeptidases - no_errors DAPK1 1612 genome.wustl.edu 36 9 89501872 89501872 + Silent SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a 9 89501872 89501872 C T SNP DAPK1 NM_004938 human genbank 54_36p 1 reviewed silent c.2544 p.I848 1 NULL HMMPfam_Death;HMMPfam_Pkinase;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_Protein kinase-like (PK-like);superfamily_DEATH domain;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors ODZ1 10178 genome.wustl.edu 36 X 123345669 123345669 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1322-01A-01W-0494-09 TCGA-25-1322-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 626f1798-fb15-4b01-8d8f-db19777d72e9 cd8be84a-2b01-491b-9427-b51a1e10786a X 123345669 123345669 C T SNP ODZ1 NM_014253 human genbank 54_36p -1 provisional missense c.6772 p.A2258T 0.982 HMMPfam_RHS_repeat HMMPfam_NHL,HMMPfam_EGF,HMMPfam_RHS_repeat,superfamily_Carboxypeptidase regulatory domain,HMMPfam_Ten_N,superfamily_Nitrous oxide reductase N-terminal domain,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_EGF/Laminin - no_errors