Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error SYT6 148281 genome.wustl.edu 36 1 114441903 114441903 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 114441903 114441903 G C SNP SYT6 NM_205848 human genbank 54_36p -1 validated missense c.1229 p.S410C 1 NULL - - no_errors SYT6 148281 genome.wustl.edu 36 1 114443407 114443407 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 114443407 114443407 G C SNP SYT6 NM_205848 human genbank 54_36p -1 validated missense c.941 p.P314R 1 NULL - - no_errors AMPD1 270 genome.wustl.edu 36 1 115033075 115033075 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 115033075 115033075 T C SNP AMPD1 ENST00000393268 human ensembl 54_36p -1 known missense c.4 p.I2V 0.05 NULL - - no_start_codon IGSF3 3321 genome.wustl.edu 36 1 116960585 116960585 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 116960585 116960585 G A SNP IGSF3 NM_001542 human genbank 54_36p -1 validated missense c.61 p.R21W 1 NULL - - no_errors NOTCH2NL 388677 genome.wustl.edu 36 1 143984619 143984619 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 143984619 143984619 C A SNP NOTCH2NL NM_203458 human genbank 54_36p 1 validated missense c.116 p.T39N 1 HMMPfam_EGF HMMPfam_EGF;HMMPfam_EGF_CA;superfamily_EGF/Laminin - no_errors ASTN1 460 genome.wustl.edu 36 1 175104728 175104728 + Silent SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 175104728 175104728 C T SNP ASTN1 NM_004319 human genbank 54_36p -1 validated silent c.3522 p.Q1174 1 NULL superfamily_Fibronectin type III;superfamily_EGF/Laminin - no_errors TEDDM1 127670 genome.wustl.edu 36 1 180635534 180635534 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 180635534 180635534 T C SNP TEDDM1 NM_172000 human genbank 54_36p -1 validated missense c.710 p.K237R NULL - - no_errors PTPRC 5788 genome.wustl.edu 36 1 196938184 196938184 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 196938184 196938184 C A SNP PTPRC NM_002838 human genbank 54_36p 1 reviewed missense c.479 p.P160Q NULL HMMPfam_Y_phosphatase;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_(Phosphotyrosine protein) phosphatases II - no_errors NFASC 23114 genome.wustl.edu 36 1 203236956 203236956 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 203236956 203236956 C T SNP NFASC ENST00000367172 human ensembl 54_36p 1 known missense c.3376 p.L1126F 0.51 HMMPfam_fn3 HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;HMMPfam_ig;superfamily_Immunoglobulin - no_errors IKBKE 9641 genome.wustl.edu 36 1 204719028 204719028 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 204719028 204719028 C T SNP IKBKE NM_014002 human genbank 54_36p 1 validated missense c.1112 p.A371V 1 NULL Pkinase;HMMPfam_Pkinase - no_errors LPPR4 9890 genome.wustl.edu 36 1 99544845 99544845 + Silent SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 1 99544845 99544845 C T SNP LPPR4 NM_014839 human genbank 54_36p 1 reviewed silent c.1983 p.Y661 0.99 NULL HMMPfam_PAP2;superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase - no_errors ACADSB 36 genome.wustl.edu 36 10 124792672 124792672 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 10 124792672 124792672 G A SNP ACADSB NM_001609 human genbank 54_36p 1 reviewed missense c.802 p.V268I 1 NULL HMMPfam_Acyl-CoA_dh_1;HMMPfam_Acyl-CoA_dh_M;HMMPfam_Acyl-CoA_dh_N;superfamily_Acyl-CoA dehydrogenase C-terminal domain-like;superfamily_Acyl-CoA dehydrogenase NM domain-like - no_errors LOC729023 729023 genome.wustl.edu 36 10 52114870 52114870 + RNA SNP A A T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 10 52114870 52114870 A T SNP LOC729023 XR_038278 human genbank 54_36p 1 model rna NULL NULL - - - pseudogene ENSG00000211894 0 genome.wustl.edu 36 14 105206287 105206287 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 14 105206287 105206287 G C SNP ENSG00000211894 ENST00000390546 human ensembl 54_36p -1 known missense c.433 p.R145G 0.04 NULL - - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region PIRT 644139 genome.wustl.edu 36 17 10669679 10669679 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 17 10669679 10669679 C T SNP PIRT NM_001101387 human genbank 54_36p -1 validated missense c.9 p.M3I 1 NULL - - no_errors SCN3B 55800 genome.wustl.edu 36 11 123018415 123018415 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 11 123018415 123018415 G A SNP SCN3B NM_001040151 human genbank 54_36p -1 reviewed missense c.394 p.R132W 0.97 HMMPfam_V-set HMMPfam_V-set;superfamily_Immunoglobulin - no_errors MPEG1 219972 genome.wustl.edu 36 11 58735419 58735419 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 11 58735419 58735419 G C SNP MPEG1 NM_001039396 human genbank 54_36p -1 validated missense c.1496 p.A499G 0.17 NULL - - no_errors PICALM 8301 genome.wustl.edu 36 11 85363443 85363443 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 11 85363443 85363443 C T SNP PICALM NM_007166 human genbank 54_36p -1 validated missense c.1900 p.V634I 1 NULL HMMPfam_ANTH;superfamily_ENTH/VHS domain;superfamily_GAT-like domain - no_errors GNPTAB 79158 genome.wustl.edu 36 12 100677965 100677965 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 12 100677965 100677965 G A SNP GNPTAB NM_024312 human genbank 54_36p -1 validated nonsense c.3223 p.Q1075* 1 NULL HMMPfam_Notch;HMMPfam_DMAP_binding;superfamily_EF-hand;superfamily_Notch domain - no_errors STAB2 55576 genome.wustl.edu 36 12 102655613 102655613 + Silent SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 12 102655613 102655613 C T SNP STAB2 NM_017564 human genbank 54_36p 1 reviewed silent c.5622 p.A1874 1 HMMPfam_Fasciclin HMMPfam_Xlink;HMMPfam_Fasciclin;HMMPfam_EGF;HMMPfam_EGF_alliinase;superfamily_Mannose 6-phosphate receptor domain;superfamily_Growth factor receptor domain;HMMPfam_EGF_2;superfamily_C-type lectin-like;superfamily_EGF/Laminin;superfamily_FAS1 domain - no_errors SLCO1B1 10599 genome.wustl.edu 36 12 21221096 21221096 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 A A A T A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 12 21221096 21221096 A T SNP SLCO1B1 NM_006446 human genbank 54_36p 1 reviewed missense c.479 p.K160I 0.63 NULL - - no_errors SRGAP1 57522 genome.wustl.edu 36 12 62789063 62789063 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 12 62789063 62789063 A G SNP SRGAP1 NM_020762 human genbank 54_36p 1 validated missense c.1898 p.Y633C 1 HMMPfam_RhoGAP HMMPfam_RhoGAP;HMMPfam_FCH;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_GTPase activation domain GAP - no_errors ATP8A2 51761 genome.wustl.edu 36 13 25309376 25309376 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 13 25309376 25309376 C T SNP ATP8A2 NM_016529 human genbank 54_36p 1 validated missense c.2830 p.P944S 1 NULL - - no_errors CCNA1 8900 genome.wustl.edu 36 13 35914759 35914759 + Missense_Mutation SNP G A A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 13 35914759 35914759 G A SNP CCNA1 NM_003914 human genbank 54_36p 1 reviewed missense c.1355 p.C452Y 0.77 HMMPfam_Cyclin_C HMMPfam_Cyclin_C;HMMPfam_Cyclin_N;superfamily_Cyclin-like - no_errors OR4K1 79544 genome.wustl.edu 36 14 19473741 19473741 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 14 19473741 19473741 T C SNP OR4K1 NM_001004063 human genbank 54_36p 1 provisional missense c.76 p.F26L 0.15 NULL - - no_errors DHRS4L2 317749 genome.wustl.edu 36 14 23529369 23529369 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 T T T A T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 14 23529369 23529369 T A SNP DHRS4L2 NM_198083 human genbank 54_36p 1 validated missense c.267 p.H89Q 1 NULL - - no_errors KIAA1409 57578 genome.wustl.edu 36 14 93190066 93190066 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 14 93190066 93190066 C T SNP KIAA1409 NM_020818 human genbank 54_36p 1 validated missense c.5810 p.S1937L 1 NULL - - no_errors TCL1B 9623 genome.wustl.edu 36 14 95226939 95226939 + Silent SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 14 95226939 95226939 C T SNP TCL1B NM_004918 human genbank 54_36p 1 validated silent c.276 p.P92 NULL - - no_errors IVD 3712 genome.wustl.edu 36 15 38487138 38487138 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 A A A G A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 15 38487138 38487138 A G SNP IVD NM_002225 human genbank 54_36p 1 reviewed missense c.154 p.T52A 1 HMMPfam_Acyl-CoA_dh_N HMMPfam_Acyl-CoA_dh_1;HMMPfam_Acyl-CoA_dh_M;HMMPfam_Acyl-CoA_dh_N;superfamily_Acyl-CoA dehydrogenase C-terminal domain-like;superfamily_Acyl-CoA dehydrogenase NM domain-like - no_errors CDH8 1006 genome.wustl.edu 36 16 60245088 60245088 + Silent SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 16 60245088 60245088 G A SNP CDH8 NM_001796 human genbank 54_36p -1 reviewed silent c.2325 p.Y775 1 HMMPfam_Cadherin_C HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors LOC645313 645313 genome.wustl.edu 36 17 20628829 20628829 + RNA SNP A A G novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 17 20628829 20628829 A G SNP LOC645313 XR_017585 human genbank 54_36p 1 model rna NULL NULL 0.92 - - - pseudogene TP53 7157 genome.wustl.edu 36 17 7518299 7518299 + Missense_Mutation SNP T C C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 17 7518299 7518299 T C SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.707 p.Y236C 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors DSC3 1825 genome.wustl.edu 36 18 26859880 26859880 + Splice_Site SNP C C A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 18 26859880 26859880 C A SNP DSC3 NM_001941 human genbank 54_36p -1 reviewed splice_site c.475-1 e5-1 1 - - - no_errors PPP2R1A 5518 genome.wustl.edu 36 19 57408139 57408139 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 19 57408139 57408139 G T SNP PPP2R1A NM_014225 human genbank 54_36p 1 reviewed missense c.771 p.W257C 1 HMMPfam_HEAT HMMPfam_HEAT,superfamily_ARM repeat - no_errors NXPH2 11249 genome.wustl.edu 36 2 139145339 139145339 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 2 139145339 139145339 C A SNP NXPH2 NM_007226 human genbank 54_36p -1 validated nonsense c.418 p.G140* 1 HMMPfam_Neurexophilin HMMPfam_Neurexophilin - no_errors ORC4 5000 genome.wustl.edu 36 2 148446807 148446807 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 2 148446807 148446807 T A SNP ORC4L NM_002552 human genbank 54_36p -1 reviewed missense c.196 p.I66F 1 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors GPD2 2820 genome.wustl.edu 36 2 157147615 157147615 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 2 157147615 157147615 C T SNP GPD2 NM_000408 human genbank 54_36p 1 validated missense c.2123 p.A708V 0.98 NULL HMMPfam_efhand;HMMPfam_DAO;superfamily_EF-hand;superfamily_FAD/NAD(P)-binding domain;superfamily_FAD-linked reductases C-terminal domain - no_errors GULP1 51454 genome.wustl.edu 36 2 189157286 189157286 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 T T T C T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 2 189157286 189157286 T C SNP GULP1 NM_016315 human genbank 54_36p 1 validated missense c.659 p.I220T 1 NULL HMMPfam_PID;superfamily_PH domain-like - no_errors KIDINS220 57498 genome.wustl.edu 36 2 8843914 8843914 + Silent SNP T T C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 2 8843914 8843914 T C SNP KIDINS220 NM_020738 human genbank 54_36p -1 validated silent c.1812 p.R604 0.98 NULL - - no_errors TRIM43 129868 genome.wustl.edu 36 2 95623587 95623587 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 2 95623587 95623587 G T SNP TRIM43 NM_138800 human genbank 54_36p 1 provisional missense c.89 p.C30F 0.92 NULL - - no_errors ECE2 9718 genome.wustl.edu 36 3 185491067 185491067 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 3 185491067 185491067 G A SNP ECE2 NM_014693 human genbank 54_36p 1 validated missense c.2038 p.A680T 1 NULL - - no_errors KCNH8 131096 genome.wustl.edu 36 3 19297777 19297777 + Missense_Mutation SNP G G T Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 3 19297777 19297777 G T SNP KCNH8 NM_144633 human genbank 54_36p 1 reviewed missense c.394 p.D132Y 1 HMMPfam_PAS_3 HMMPfam_cNMP_binding,superfamily_cAMP-binding domain-like,HMMPfam_Ion_trans,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels - no_errors AASDH 132949 genome.wustl.edu 36 4 56915021 56915021 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 4 56915021 56915021 G A SNP AASDH NM_181806 human genbank 54_36p -1 validated nonsense c.1324 p.R442* 0.97 NULL - - no_errors LPHN3 23284 genome.wustl.edu 36 4 62495359 62495359 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 4 62495359 62495359 C G SNP LPHN3 NM_015236 human genbank 54_36p 1 reviewed missense c.2348 p.T783R 1 NULL - - no_errors LOC391656 391656 genome.wustl.edu 36 4 62654107 62654108 + Nonsense_Mutation DNP CT CT AA novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 CT CT CT AA CT CT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 4 62654107 62654108 CT AA DNP LOC391656 XM_373027 human genbank 54_36p -1 model nonsense c.256_255 p.EK86* 1.000:1.000 NULL - - pseudogene GABRG2 2566 genome.wustl.edu 36 5 161512879 161512879 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 5 161512879 161512879 A G SNP GABRG2 NM_198904 human genbank 54_36p 1 reviewed missense c.1355 p.Y452C 1 HMMPfam_Neur_chan_memb HMMPfam_Neur_chan_memb;HMMPfam_Neur_chan_LBD;superfamily_Nicotinic receptor ligand binding domain-like;superfamily_Neurotransmitter-gated ion-channel transmembrane pore - no_errors FYB 2533 genome.wustl.edu 36 5 39170133 39170133 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 5 39170133 39170133 G A SNP FYB NM_001465 human genbank 54_36p -1 validated missense c.1751 p.P584L NULL superfamily_SH3-domain;HMMPfam_SH3_2 - no_errors VCAN 1462 genome.wustl.edu 36 5 82871305 82871305 + Missense_Mutation SNP A G G novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 5 82871305 82871305 A G SNP VCAN NM_004385 human genbank 54_36p 1 validated missense c.6727 p.T2243A 0.19 NULL HMMPfam_Sushi;HMMPfam_Xlink;HMMPfam_Lectin_C;HMMPfam_EGF;HMMPfam_V-set;superfamily_Immunoglobulin;superfamily_C-type lectin-like;superfamily_EGF/Laminin;superfamily_Complement control module/SCR domain - no_errors TTC37 9652 genome.wustl.edu 36 5 94882234 94882234 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 5 94882234 94882234 C G SNP TTC37 NM_014639 human genbank 54_36p -1 provisional missense c.2056 p.D686H 0.95 NULL - - no_errors TTC37 9652 genome.wustl.edu 36 5 94882252 94882252 + Missense_Mutation SNP C A A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 5 94882252 94882252 C A SNP TTC37 NM_014639 human genbank 54_36p -1 provisional missense c.2038 p.A680S 1 NULL - - no_errors TTC37 9652 genome.wustl.edu 36 5 94883637 94883637 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 5 94883637 94883637 C A SNP TTC37 NM_014639 human genbank 54_36p -1 provisional nonsense c.1888 p.E630* 0.97 NULL - - no_errors PLEKHG1 57480 genome.wustl.edu 36 6 151131503 151131503 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 6 151131503 151131503 C T SNP PLEKHG1 NM_001029884 human genbank 54_36p 1 provisional missense c.448 p.P150S 1 NULL - - no_errors HIST1H1C 3006 genome.wustl.edu 36 6 26164625 26164625 + Missense_Mutation SNP G G C Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 6 26164625 26164625 G C SNP HIST1H1C NM_005319 human genbank 54_36p -1 reviewed missense c.11 p.T4S 0.983 NULL - - no_errors KCNQ5 56479 genome.wustl.edu 36 6 73844239 73844239 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 6 73844239 73844239 G A SNP KCNQ5 NM_019842 human genbank 54_36p 1 reviewed missense c.826 p.V276I 1 HMMPfam_Ion_trans HMMPfam_Ion_trans;HMMPfam_KCNQ_channel;superfamily_Voltage-gated potassium channels - no_errors GCC1 79571 genome.wustl.edu 36 7 127010028 127010028 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 7 127010028 127010028 C T SNP GCC1 NM_024523 human genbank 54_36p -1 reviewed missense c.1604 p.R535Q 1 NULL - - no_errors TNPO3 23534 genome.wustl.edu 36 7 128399755 128399755 + Silent SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 7 128399755 128399755 C T SNP TNPO3 NM_012470 human genbank 54_36p -1 validated silent c.2391 p.R797 1 NULL HMMPfam_Xpo1;superfamily_ARM repeat - no_errors KCTD7 154881 genome.wustl.edu 36 7 65741314 65741314 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 7 65741314 65741314 G A SNP KCTD7 NM_153033 human genbank 54_36p 1 validated missense c.530 p.R177H 1 NULL - - no_errors HAS2 3037 genome.wustl.edu 36 8 122695718 122695718 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 8 122695718 122695718 C A SNP HAS2 NM_005328 human genbank 54_36p -1 reviewed missense c.1471 p.G491C 1 NULL HMMPfam_Glycos_transf_2;superfamily_Nucleotide-diphospho-sugar transferases - no_errors IFNA17 3451 genome.wustl.edu 36 9 21217987 21217987 + Silent SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 9 21217987 21217987 G A SNP IFNA17 NM_021268 human genbank 54_36p -1 provisional silent c.186 p.P62 0 NULL - - no_errors FAM75D1 389763 genome.wustl.edu 36 9 83799423 83799423 + Silent SNP G G A novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 9 83799423 83799423 G A SNP FLJ46321 NM_001001670 human genbank 54_36p 1 validated silent c.4218 p.R1406 NULL - - no_errors SYN1 6853 genome.wustl.edu 36 X 47320545 47320545 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 X 47320545 47320545 T C SNP SYN1 NM_006950 human genbank 54_36p -1 reviewed missense c.1087 p.I363V 1 HMMPfam_Synapsin_C HMMPfam_Synapsin_N;HMMPfam_Synapsin_C;superfamily_PreATP-grasp domain;superfamily_Glutathione synthetase ATP-binding domain-like - no_errors TIMM17B 10245 genome.wustl.edu 36 X 48636199 48636199 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 X 48636199 48636199 C G SNP TIMM17B NM_005834 human genbank 54_36p -1 validated missense c.358 p.G120R 1 NULL - - no_errors ACRC 93953 genome.wustl.edu 36 X 70740470 70740470 + Silent SNP C C T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 X 70740470 70740470 C T SNP ACRC NM_052957 human genbank 54_36p 1 validated silent c.618 p.D206 0.04 NULL - - no_errors DIAPH2 1730 genome.wustl.edu 36 X 96072406 96072406 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1616-01A-01W-0553-09 TCGA-24-1616-10A-01W-0553-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx c464b2f6-9cfe-463a-b5e3-9a76cd4480c5 502d962b-e71b-4b9d-a85f-4513c720ee09 X 96072406 96072406 A T SNP DIAPH2 NM_006729 human genbank 54_36p 1 reviewed missense c.997 p.I333L 1 HMMPfam_Drf_FH3 HMMPfam_Drf_DAD;HMMPfam_Drf_FH3;HMMPfam_Drf_GBD;HMMPfam_FH2;superfamily_Formin homology 2 domain (FH2 domain) - no_errors