Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID CLPTM1L 81037 hgsc.bcm.edu 36 5 1394926 1394926 + Missense_Mutation SNP A A G novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 CTSE 1510 hgsc.bcm.edu 36 1 204486930 204486930 + Silent SNP C C T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 DOC2BL 653051 hgsc.bcm.edu 36 17 11294 11295 + In_Frame_Ins INS - - CAGTCC novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 FAM160B2 64760 hgsc.bcm.edu 36 8 22011997 22011998 + Frame_Shift_Ins INS - - A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 HLA-DRB1 3123 hgsc.bcm.edu 36 6 32659926 32659926 + Frame_Shift_Del DEL G G - novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 KCNMA1 3778 hgsc.bcm.edu 36 10 78399792 78399792 + Frame_Shift_Del DEL T T - novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 RHBG 57127 hgsc.bcm.edu 36 1 154620972 154620972 + Frame_Shift_Del DEL C C - rs11303415 TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 SRRM2 23524 hgsc.bcm.edu 36 16 2755497 2755497 + Missense_Mutation SNP A A T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 ABCC12 94160 hgsc.bcm.edu 36 16 46732202 46732202 + Missense_Mutation SNP G G A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 ACTN2 88 hgsc.bcm.edu 36 1 234967080 234967080 + Silent SNP T T G novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T T G T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 ADAMTS9 56999 hgsc.bcm.edu 36 3 64562774 64562774 + Silent SNP G G A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 BDKRB1 623 hgsc.bcm.edu 36 14 95800448 95800448 + Missense_Mutation SNP C C A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 C9orf126 286205 hgsc.bcm.edu 36 9 126858003 126858003 + Missense_Mutation SNP T T A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T T A T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 DRP2 1821 hgsc.bcm.edu 36 X 100396880 100396880 + Silent SNP C C T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 IGSF9B 22997 hgsc.bcm.edu 36 11 133306213 133306213 + Silent SNP G G A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 LIMD1 8994 hgsc.bcm.edu 36 3 45611883 45611883 + Missense_Mutation SNP G G T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 OR5B17 219965 hgsc.bcm.edu 36 11 57882931 57882931 + Missense_Mutation SNP T T C novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T T C T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 OR8U1 219417 hgsc.bcm.edu 36 11 55899702 55899702 + Silent SNP G G A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 PARP3 10039 hgsc.bcm.edu 36 3 51956865 51956865 + Missense_Mutation SNP A A T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A A T A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 PRAMEF12 390999 hgsc.bcm.edu 36 1 12759909 12759909 + Missense_Mutation SNP G G T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 SLAMF6 114836 hgsc.bcm.edu 36 1 158727778 158727778 + Missense_Mutation SNP G G T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 SLC7A14 57709 hgsc.bcm.edu 36 3 171681274 171681274 + Silent SNP C C T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 SYTL2 54843 hgsc.bcm.edu 36 11 85113015 85113015 + Silent SNP A A T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A A T A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 TKT 7086 hgsc.bcm.edu 36 3 53235821 53235821 + Missense_Mutation SNP A A C novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A A C A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 TMPRSS5 80975 hgsc.bcm.edu 36 11 113065743 113065743 + Missense_Mutation SNP T T C novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T T C T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 TRPV4 59341 hgsc.bcm.edu 36 12 108706569 108706569 + Missense_Mutation SNP T T C novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T T C T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 TXLNA 200081 hgsc.bcm.edu 36 1 32430561 32430561 + Missense_Mutation SNP G G T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 ZDHHC9 51114 hgsc.bcm.edu 36 X 128785369 128785369 + Missense_Mutation SNP C C T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 ZNF451 26036 hgsc.bcm.edu 36 6 57120398 57120398 + Missense_Mutation SNP G G T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 CRIM1 51232 hgsc.bcm.edu 36 2 36618062 36618062 + Missense_Mutation SNP G G A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 CYLC1 1538 hgsc.bcm.edu 36 X 83015354 83015354 + Nonsense_Mutation SNP A A T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A T T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 ZNF528 84436 hgsc.bcm.edu 36 19 57610440 57610440 + Missense_Mutation SNP C C A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 ADAM33 80332 hgsc.bcm.edu 36 20 3603433 3603433 + Missense_Mutation SNP A A G novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A A G A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 ADCK1 57143 hgsc.bcm.edu 36 14 77467723 77467723 + Missense_Mutation SNP G G A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 AK7 122481 hgsc.bcm.edu 36 14 95992538 95992538 + Missense_Mutation SNP T T G novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T T G T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 ARHGAP20 57569 hgsc.bcm.edu 36 11 109959541 109959541 + Missense_Mutation SNP T T G novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T T G T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 BACH1 571 hgsc.bcm.edu 36 21 29636933 29636933 + Nonsense_Mutation SNP G G T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 BRCA2 675 hgsc.bcm.edu 36 13 31834675 31834675 + Frame_Shift_Del DEL T T - novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T - - T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 COL17A1 1308 hgsc.bcm.edu 36 10 105811212 105811212 + Frame_Shift_Del DEL A A - novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A A - A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 DGKB 1607 hgsc.bcm.edu 36 7 14580406 14580406 + Missense_Mutation SNP G G A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 DONSON 29980 hgsc.bcm.edu 36 21 33876164 33876164 + Missense_Mutation SNP C C A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 GOLGA4 2803 hgsc.bcm.edu 36 3 37340332 37340332 + Missense_Mutation SNP C C G novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 HECW1 23072 hgsc.bcm.edu 36 7 43556567 43556567 + Splice_Site SNP A A T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A A T A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 KIAA0317 9870 hgsc.bcm.edu 36 14 74201301 74201301 + Missense_Mutation SNP G G C novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 KIAA0556 23247 hgsc.bcm.edu 36 16 27537315 27537315 + Missense_Mutation SNP G G C novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 LAMB1 3912 hgsc.bcm.edu 36 7 107386991 107386991 + Missense_Mutation SNP C C T novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 MAP7D3 79649 hgsc.bcm.edu 36 X 135154483 135154483 + Nonsense_Mutation SNP T T A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 T T T A T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 PPFIA4 8497 hgsc.bcm.edu 36 1 201296733 201296733 + Missense_Mutation SNP G G A novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 TP53 7157 hgsc.bcm.edu 36 17 7519118 7519118 + Missense_Mutation SNP A A C novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A C C A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923 FLT3 2322 hgsc.bcm.edu 36 13 27487292 27487292 + Splice_Site SNP A A C novel TCGA-24-1555-01A-01W-0552-10 TCGA-24-1555-10A-01W-0552-10 A A C C A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 935e77cb-eb3c-41a7-bb53-ee37211618ad cbdd703d-685b-44db-9d2b-f2bad2174923