Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID GABRD 2563 broad.mit.edu 36 1 1951512 1951512 + Silent SNP C C T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 PTPRF 5792 broad.mit.edu 36 1 43817146 43817146 + Missense_Mutation SNP G G A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 GBA 2629 broad.mit.edu 36 1 153473786 153473786 + Silent SNP T T C novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 T T C C T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 RET 5979 broad.mit.edu 36 10 42939221 42939221 + Silent SNP C C T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 OR52B6 340980 broad.mit.edu 36 11 5559626 5559626 + Missense_Mutation SNP G G T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 SYT7 9066 broad.mit.edu 36 11 61057099 61057099 + Missense_Mutation SNP G G A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 STX5 6811 broad.mit.edu 36 11 62351640 62351640 + Nonsense_Mutation SNP G G A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 SHANK2 22941 broad.mit.edu 36 11 70026568 70026568 + Missense_Mutation SNP G G C novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 RNFT2 84900 broad.mit.edu 36 12 115756109 115756109 + Missense_Mutation SNP G G C novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 POTEG 404785 broad.mit.edu 36 14 18623823 18623823 + Missense_Mutation SNP G G A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 C14orf102 55051 broad.mit.edu 36 14 89825232 89825232 + Missense_Mutation SNP C C T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 INO80 54617 broad.mit.edu 36 15 39171602 39171602 + Missense_Mutation SNP T T C novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 C17orf97 400566 broad.mit.edu 36 17 263337 263337 + Silent SNP C C T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 MYO18A 399687 broad.mit.edu 36 17 24461139 24461139 + Missense_Mutation SNP C C G novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 OR7G1 125962 broad.mit.edu 36 19 9086745 9086745 + Missense_Mutation SNP C C G novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 ZNF208 7757 broad.mit.edu 36 19 21947816 21947816 + Missense_Mutation SNP C C A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C A A C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 LRP3 4037 broad.mit.edu 36 19 38388221 38388221 + Silent SNP C C T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 DYRK1B 9149 broad.mit.edu 36 19 45011038 45011038 + Silent SNP G G A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 DYRK1B 9149 broad.mit.edu 36 19 45012486 45012486 + Missense_Mutation SNP G G C novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 ATP6V1A 523 broad.mit.edu 36 3 114980320 114980320 + Silent SNP C C G novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C G G C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 USO1 8615 broad.mit.edu 36 4 76911071 76911071 + Missense_Mutation SNP G G T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 PCDHGB5 56101 broad.mit.edu 36 5 140758483 140758483 + Missense_Mutation SNP G G A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 HIST1H2AE 3012 broad.mit.edu 36 6 26325293 26325293 + Missense_Mutation SNP G G A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 C6orf27 80737 broad.mit.edu 36 6 31844873 31844873 + Nonsense_Mutation SNP G G C novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 RBAK 57786 broad.mit.edu 36 7 5063848 5063848 + Missense_Mutation SNP T T G novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 DLX6 1750 broad.mit.edu 36 7 96477083 96477083 + Nonsense_Mutation SNP A A T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 PPP2R2A 5520 broad.mit.edu 36 8 26283770 26283770 + Missense_Mutation SNP C C T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 FNTA 2339 broad.mit.edu 36 8 43030803 43030803 + Missense_Mutation SNP G G T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 ST18 9705 broad.mit.edu 36 8 53240338 53240338 + Missense_Mutation SNP A A G novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 A A G G A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 DPY19L4 286148 broad.mit.edu 36 8 95816070 95816070 + Missense_Mutation SNP G G A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 COL22A1 169044 broad.mit.edu 36 8 139687806 139687806 + Silent SNP C C T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 ELAVL2 1993 broad.mit.edu 36 9 23682598 23682598 + Missense_Mutation SNP A A T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 ZNF462 58499 broad.mit.edu 36 9 108731020 108731020 + Missense_Mutation SNP G G C novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 SAGE1 55511 broad.mit.edu 36 X 134820333 134820333 + Missense_Mutation SNP G G A novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 TP53 7157 broad.mit.edu 36 17 7517830 7517830 + Missense_Mutation SNP G G T novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 G G T T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA;Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97 BRD2 6046 broad.mit.edu 36 6 33052576 33052577 + Frame_Shift_Ins INS - T - novel none TCGA-24-1552-01A-01W-0551-08 TCGA-24-1552-10A-01W-0551-08 - - T T - - Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 4f1dd9ac-a714-4b26-920c-fc1ee13dc493 85d51d09-1a75-4d66-a21b-6b9a7ced3a97