Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error ACTL8 81569 genome.wustl.edu 36 1 18025595 18025595 + Silent SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 1 18025595 18025595 G A SNP ACTL8 NM_030812 human genbank 54_36p 1 provisional silent c.1095 p.R365 0.004 NULL - - no_errors IVNS1ABP 10625 genome.wustl.edu 36 1 183533919 183533919 + Silent SNP C C G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 1 183533919 183533919 C G SNP IVNS1ABP NM_006469 human genbank 54_36p -1 validated silent c.1800 p.G600 0.994 NULL - - no_errors ARID4B 51742 genome.wustl.edu 36 1 233411552 233411552 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 1 233411552 233411552 T C SNP ARID4B NM_016374 human genbank 54_36p -1 reviewed missense c.3305 p.N1102S 1 NULL HMMPfam_ARID,HMMPfam_RBB1NT,superfamily_ARID-like,superfamily_Tudor/PWWP/MBT - no_errors KMO 8564 genome.wustl.edu 36 1 239820012 239820012 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 1 239820012 239820012 T G SNP KMO NM_003679 human genbank 54_36p 1 validated missense c.1174 p.S392A 0.288 NULL HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain - no_errors CHD5 26038 genome.wustl.edu 36 1 6129510 6129511 + Frame_Shift_Ins INS - - G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 1 6129510 6129511 - G INS CHD5 NM_015557 human genbank 54_36p -1 provisional frame_shift_ins c.1392_1391 p.L465fs 0.408:0.998 NULL HMMPfam_SNF2_N;HMMPfam_Chromo;HMMPfam_Helicase_C;HMMPfam_PHD;superfamily_Homeodomain-like;superfamily_HMG-box;HMMPfam_DUF1086;HMMPfam_DUF1087;superfamily_FYVE/PHD zinc finger;HMMPfam_CHDCT2;HMMPfam_CHDNT;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Chromo domain-like - no_errors PSD 5662 genome.wustl.edu 36 10 104166563 104166564 + Frame_Shift_Ins INS - - G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 10 104166563 104166564 - G INS PSD NM_002779 human genbank 54_36p -1 provisional frame_shift_ins c.223_222 p.S74fs 0.121:0.115 NULL HMMPfam_Sec7;superfamily_Sec7 domain;HMMPfam_PH;superfamily_PH domain-like - no_errors NHLRC2 374354 genome.wustl.edu 36 10 115658198 115658198 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 10 115658198 115658198 G A SNP NHLRC2 NM_198514 human genbank 54_36p 1 provisional missense c.2094 p.M698I 1 NULL - - no_errors KIAA1462 57608 genome.wustl.edu 36 10 30357354 30357354 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 10 30357354 30357354 C A SNP KIAA1462 NM_020848 human genbank 54_36p -1 validated nonsense c.1729 p.E577* 1 NULL - - no_errors KIF5B 3799 genome.wustl.edu 36 10 32369383 32369383 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 10 32369383 32369383 C T SNP KIF5B NM_004521 human genbank 54_36p -1 validated missense c.223 p.E75K 1 NULL - - no_errors RASSF4 83937 genome.wustl.edu 36 10 44787207 44787207 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 10 44787207 44787207 G A SNP RASSF4 ENST00000374411 human ensembl 54_36p 1 known missense c.316 p.V106M 0.029 NULL - - no_start_codon CEP164 22897 genome.wustl.edu 36 11 116727895 116727896 + Frame_Shift_Ins INS - - C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 11 116727895 116727896 - C INS CEP164 NM_014956 human genbank 54_36p 1 validated frame_shift_ins c.374_375 p.K128fs 0.964:0.403 NULL HMMPfam_WW;superfamily_WW domain - no_errors C11orf40 143501 genome.wustl.edu 36 11 4551264 4551264 + Silent SNP A A G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 11 4551264 4551264 A G SNP C11orf40 NM_144663 human genbank 54_36p -1 predicted silent c.156 p.N52 0.001 NULL - - no_errors OR4C16 219428 genome.wustl.edu 36 11 55096435 55096435 + Nonsense_Mutation SNP A A T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 11 55096435 55096435 A T SNP OR4C16 NM_001004701 human genbank 54_36p 1 validated nonsense c.256 p.K86* 0 HMMPfam_7tm_1 HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like - no_errors OR10Q1 219960 genome.wustl.edu 36 11 57752498 57752498 + Silent SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 11 57752498 57752498 G A SNP OR10Q1 NM_001004471 human genbank 54_36p -1 provisional silent c.426 p.R142 0 NULL - - no_errors FERMT3 83706 genome.wustl.edu 36 11 63745130 63745130 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 11 63745130 63745130 C T SNP FERMT3 NM_178443 human genbank 54_36p 1 validated missense c.1624 p.R542C 1 NULL - - no_errors MAML2 84441 genome.wustl.edu 36 11 95465303 95465303 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 11 95465303 95465303 T C SNP MAML2 NM_032427 human genbank 54_36p -1 validated missense c.1540 p.M514V 0.415 NULL - - no_errors CNTN5 53942 genome.wustl.edu 36 11 99567102 99567102 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 11 99567102 99567102 C G SNP CNTN5 NM_014361 human genbank 54_36p 1 reviewed missense c.1615 p.L539V 1 HMMPfam_I-set HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin - no_errors GCN1L1 10985 genome.wustl.edu 36 12 119080063 119080063 + Silent SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 12 119080063 119080063 G A SNP GCN1L1 NM_006836 human genbank 54_36p -1 validated silent c.3060 p.P1020 0 NULL HMMPfam_HEAT,superfamily_ARM repeat - no_errors WBP11 51729 genome.wustl.edu 36 12 14838057 14838057 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 12 14838057 14838057 T C SNP WBP11 NM_016312 human genbank 54_36p -1 reviewed missense c.788 p.D263G 1 NULL - - no_errors HOXC4 3221 genome.wustl.edu 36 12 52734193 52734193 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 12 52734193 52734193 G C SNP HOXC4 NM_014620 human genbank 54_36p 1 reviewed missense c.220 p.G74R 1 NULL - - no_errors TMTC2 160335 genome.wustl.edu 36 12 81605516 81605516 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 12 81605516 81605516 G T SNP TMTC2 NM_152588 human genbank 54_36p 1 provisional missense c.20 p.S7I 1 NULL - - no_errors LOC390424 390424 genome.wustl.edu 36 13 106114293 106114294 + RNA INS - - A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 13 106114293 106114294 - A INS LOC390424 XR_016535 human genbank 54_36p 1 model rna NULL NULL 0.958:0.959 - - - no_errors PDS5B 23047 genome.wustl.edu 36 13 32228035 32228035 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 13 32228035 32228035 G T SNP PDS5B NM_015032 human genbank 54_36p 1 validated missense c.2997 p.L999F 1 NULL - - no_errors GAN 8139 genome.wustl.edu 36 16 79942739 79942739 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 16 79942739 79942739 T C SNP GAN NM_022041 human genbank 54_36p 1 reviewed missense c.218 p.I73T 1 NULL - - no_errors HSD17B2 3294 genome.wustl.edu 36 16 80689396 80689396 + Missense_Mutation SNP C T T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 16 80689396 80689396 C T SNP HSD17B2 NM_002153 human genbank 54_36p 1 validated missense c.1018 p.P340S 0.111 NULL HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains - no_errors MYH13 8735 genome.wustl.edu 36 17 10156792 10156793 + Frame_Shift_Ins INS - - T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 17 10156792 10156793 - T INS MYH13 NM_003802 human genbank 54_36p -1 validated frame_shift_ins c.4189_4188 p.L1396fs 1.000:0.999 HMMPfam_Myosin_tail_1 HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors BECN1 8678 genome.wustl.edu 36 17 38216443 38216443 + Missense_Mutation SNP T C C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 17 38216443 38216443 T C SNP BECN1 NM_003766 human genbank 54_36p -1 validated missense c.1214 p.D405G 1 HMMPfam_APG6 HMMPfam_APG6 - no_errors MINK1 50488 genome.wustl.edu 36 17 4740635 4740636 + Frame_Shift_Ins INS - - G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 17 4740635 4740636 - G INS MINK1 ENST00000355280 human ensembl 54_36p 1 known frame_shift_ins c.3445_3446 p.E1151fs 1.000:1.000 HMMPfam_CNH HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like);Pkinase;CNH;HMMPfam_CNH - no_errors BCAS3 54828 genome.wustl.edu 36 17 56516669 56516669 + Missense_Mutation SNP A T T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 17 56516669 56516669 A T SNP BCAS3 NM_001099432 human genbank 54_36p 1 validated missense c.2432 p.D811V 1 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7518290 7518290 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 17 7518290 7518290 T C SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.716 p.N239S 1 HMMPfam_P53 superfamily_p53-like transcription factors,superfamily_p53 tetramerization domain,P53_tetramer,HMMPfam_P53_tetramer,P53,HMMPfam_P53,P53_TAD,HMMPfam_P53_TAD - no_errors LOC649299 649299 genome.wustl.edu 36 19 21208075 21208075 + Silent SNP G G C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 19 21208075 21208075 G C SNP LOC649299 XM_001719759 human genbank 54_36p 1 model silent c.99 p.L33 1 NULL - - pseudogene THOP1 7064 genome.wustl.edu 36 19 2745857 2745857 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 19 2745857 2745857 G A SNP THOP1 NM_003249 human genbank 54_36p 1 provisional missense c.325 p.D109N 1 NULL "HMMPfam_Peptidase_M3,superfamily_Metalloproteases (""zincins"") catalytic domain" - no_errors C19orf48 84798 genome.wustl.edu 36 19 55993446 55993446 + Silent SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 19 55993446 55993446 C T SNP C19orf48 NM_199249 human genbank 54_36p -1 validated silent c.72 p.G24 0.195 NULL - - no_errors FHL2 2274 genome.wustl.edu 36 2 105356556 105356556 + Silent SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 2 105356556 105356556 G A SNP FHL2 NM_001039492 human genbank 54_36p -1 reviewed silent c.223 p.L75 0.937 HMMPfam_LIM superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_LIM - no_errors NEB 4703 genome.wustl.edu 36 2 152117480 152117480 + Silent SNP A A G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 2 152117480 152117480 A G SNP NEB NM_004543 human genbank 54_36p -1 reviewed silent c.14685 p.D4895 0.992 NULL - - no_errors TTN 7273 genome.wustl.edu 36 2 179287436 179287436 + Silent SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 2 179287436 179287436 G A SNP TTN NM_133378 human genbank 54_36p -1 reviewed silent c.22578 p.F7526 1 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region CCDC141 285025 genome.wustl.edu 36 2 179426577 179426577 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 2 179426577 179426577 T A SNP CCDC141 NM_173648 human genbank 54_36p -1 provisional missense c.1355 p.D452V 1 NULL - - no_errors TUBA4A 7277 genome.wustl.edu 36 2 219824670 219824670 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 2 219824670 219824670 C T SNP TUBA4A NM_006000 human genbank 54_36p -1 reviewed missense c.236 p.R79Q 1 HMMPfam_Tubulin HMMPfam_Tubulin,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like,superfamily_Tubulin C-terminal domain-like - no_errors MSH6 2956 genome.wustl.edu 36 2 47881758 47881758 + Nonsense_Mutation SNP C C G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 2 47881758 47881758 C G SNP MSH6 NM_000179 human genbank 54_36p 1 reviewed nonsense c.3132 p.Y1044* 1 NULL PWWP,HMMPfam_PWWP,MutS_V,HMMPfam_MutS_V,MutS_I,HMMPfam_MutS_I,MutS_III,HMMPfam_MutS_III,MutS_II,HMMPfam_MutS_II,MutS_IV,HMMPfam_MutS_IV - no_errors EPB41L1 2036 genome.wustl.edu 36 20 34225224 34225224 + Silent SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 20 34225224 34225224 C T SNP EPB41L1 NM_012156 human genbank 54_36p 1 reviewed silent c.111 p.H37 0.999 NULL HMMPfam_Band_41,HMMPfam_SAB,HMMPfam_4_1_CTD,HMMPfam_FA,superfamily_Second domain of FERM,superfamily_PH domain-like,superfamily_Ubiquitin-like - no_errors GALNTL2 117248 genome.wustl.edu 36 3 16192065 16192066 + Frame_Shift_Ins INS - - G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 3 16192065 16192066 - G INS GALNTL2 NM_054110 human genbank 54_36p 1 validated frame_shift_ins c.403_404 p.A137fs 0.888:0.866 NULL HMMPfam_Ricin_B_lectin;HMMPfam_Glycos_transf_2;superfamily_Ricin B-like lectins;superfamily_Nucleotide-diphospho-sugar transferases - no_errors uc010lvw.1 0 genome.wustl.edu 36 8 36780606 36780606 + Silent SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 8 36780606 36780606 G A SNP uc010lvw.1 ENST00000399881 human ensembl 54_36p 1 known silent c.15 p.T5 0 NULL - - no_start_codon:no_stop_codon SNX25 83891 genome.wustl.edu 36 4 186504684 186504684 + Splice_Site SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 4 186504684 186504684 G A SNP SNX25 NM_031953 human genbank 54_36p 1 validated splice_site c.1696-1 e12-1 1 - - - no_errors CAMK4 814 genome.wustl.edu 36 5 110758356 110758356 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 5 110758356 110758356 A G SNP CAMK4 NM_001744 human genbank 54_36p 1 reviewed missense c.436 p.K146E 1 HMMPfam_Pkinase HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like) - no_errors COMMD10 51397 genome.wustl.edu 36 5 115456227 115456227 + Silent SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 5 115456227 115456227 C T SNP COMMD10 NM_016144 human genbank 54_36p 1 provisional silent c.330 p.V110 0.499 NULL - - no_errors CDX1 1044 genome.wustl.edu 36 5 149542564 149542564 + Silent SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 5 149542564 149542564 C T SNP CDX1 NM_001804 human genbank 54_36p 1 reviewed silent c.486 p.T162 0.179 NULL - - no_errors IRX1 79192 genome.wustl.edu 36 5 3652809 3652809 + Silent SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 5 3652809 3652809 C T SNP IRX1 NM_024337 human genbank 54_36p 1 validated silent c.747 p.A249 0.685 NULL - - no_errors VARS2 57176 genome.wustl.edu 36 6 31000125 31000125 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 6 31000125 31000125 G A SNP VARS2 NM_020442 human genbank 54_36p 1 provisional missense c.2482 p.V828M 0.876 HMMPfam_Anticodon_1 HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,superfamily_Nucleotidylyl transferase - no_errors MSH5 4439 genome.wustl.edu 36 6 31823189 31823189 + Splice_Site SNP G G T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 6 31823189 31823189 G T SNP MSH5 NM_025259 human genbank 54_36p 1 reviewed splice_site c.863+1 e9+1 1 - - - no_errors VPS52 6293 genome.wustl.edu 36 6 33339243 33339243 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 6 33339243 33339243 G C SNP VPS52 NM_022553 human genbank 54_36p -1 reviewed missense c.1790 p.T597R 1 NULL - - no_errors RIOK1 83732 genome.wustl.edu 36 6 7359603 7359603 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 6 7359603 7359603 A G SNP RIOK1 NM_031480 human genbank 54_36p 1 reviewed missense c.1577 p.D526G 0.016 NULL HMMPfam_RIO1,superfamily_Protein kinase-like (PK-like) - no_errors LRRC17 10234 genome.wustl.edu 36 7 102367234 102367234 + Silent SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 7 102367234 102367234 C T SNP LRRC17 NM_001031692 human genbank 54_36p 1 provisional silent c.894 p.N298 1 HMMPfam_LRR_1 HMMPfam_LRR_1,superfamily_RNI-like - no_errors LOC407835 407835 genome.wustl.edu 36 7 128554053 128554053 + RNA SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 7 128554053 128554053 C T SNP LOC407835 NR_002144 human genbank 54_36p 1 provisional rna NULL NULL 0.949 - - - pseudogene LOC441228 441228 genome.wustl.edu 36 7 56323390 56323390 + RNA SNP C C A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 7 56323390 56323390 C A SNP LOC441228 XR_016387 human genbank 54_36p 1 model rna NULL NULL 0.091 - - - no_errors LOC728927 728927 genome.wustl.edu 36 7 63446220 63446221 + Frame_Shift_Del DEL TG TG - novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 TG TG TG - TG TG Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 7 63446220 63446221 TG - DEL LOC728927 XM_001128828 human genbank 54_36p 1 model frame_shift_del c.544_545 p.C182fs 0.863:0.649 NULL - (deletion:cds_exon[63445903;63446960]) no_errors ZNF706 51123 genome.wustl.edu 36 8 102283023 102283023 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 8 102283023 102283023 G T SNP ZNF706 NM_001042510 human genbank 54_36p -1 validated nonsense c.123 p.C41* 1 NULL - - no_errors CSMD3 114788 genome.wustl.edu 36 8 113632224 113632224 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 8 113632224 113632224 C G SNP CSMD3 NM_198123 human genbank 54_36p -1 validated missense c.4416 p.W1472C 1 HMMPfam_CUB HMMPfam_Sushi,HMMPfam_CUB,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain - no_errors PHF20L1 51105 genome.wustl.edu 36 8 133885459 133885459 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 8 133885459 133885459 G T SNP PHF20L1 NM_016018 human genbank 54_36p 1 validated nonsense c.721 p.G241* 1 NULL - - no_errors C8orf73 642475 genome.wustl.edu 36 8 144725499 144725499 + Splice_Site SNP C C G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 8 144725499 144725499 C G SNP C8orf73 NM_001100878 human genbank 54_36p -1 validated splice_site c.295-1 e2-1 0.002 - - - no_errors AKNA 80709 genome.wustl.edu 36 9 116178437 116178437 + Missense_Mutation SNP C G G novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 9 116178437 116178437 C G SNP AKNA ENST00000394574 human ensembl 54_36p -1 known missense c.1471 p.G491R 0.751 NULL - - no_errors LOC645937 645937 genome.wustl.edu 36 9 89749051 89749051 + Silent SNP G A A novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c 9 89749051 89749051 G A SNP LOC645937 XM_928905 human genbank 54_36p -1 model silent c.627 p.D209 0.931 NULL - - no_errors DMD 1756 genome.wustl.edu 36 X 32493899 32493899 + Silent SNP T T C novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c X 32493899 32493899 T C SNP DMD NM_004006 human genbank 54_36p -1 reviewed silent c.1833 p.E611 1 NULL HMMPfam_ZZ,HMMPfam_WW,superfamily_WW domain,HMMPfam_CH,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Spectrin repeat,superfamily_EF-hand,superfamily_Calponin-homology domain CH-domain - no_errors SMC1A 8243 genome.wustl.edu 36 X 53440141 53440141 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c X 53440141 53440141 C T SNP SMC1A NM_006306 human genbank 54_36p -1 reviewed missense c.2684 p.R895H 1 HMMPfam_SMC_N HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Smc hinge domain - no_errors KIAA2022 340533 genome.wustl.edu 36 X 73882145 73882145 + Silent SNP C C T novel Unknown TCGA-24-1464-01A-01W-0549-09 TCGA-24-1464-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 01ec3cbb-c68a-4874-b396-f5e34876e04a 88338ed9-553b-40df-a809-10f5c0e38a8c X 73882145 73882145 C T SNP KIAA2022 NM_001008537 human genbank 54_36p -1 validated silent c.66 p.G22 1 NULL - - no_errors