Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error SLC16A4 9122 genome.wustl.edu 36 1 110725182 110725182 + Silent SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 110725182 110725182 C T SNP SLC16A4 NM_004696 human genbank 54_36p -1 provisional silent c.471 p.L157 1 NULL - - no_errors KCND3 3752 genome.wustl.edu 36 1 112131149 112131149 + Silent SNP A A G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 112131149 112131149 A G SNP KCND3 NM_004980 human genbank 54_36p -1 reviewed silent c.1209 p.V403 0.98 NULL - - no_errors ARHGAP30 257106 genome.wustl.edu 36 1 159288936 159288936 + Silent SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 159288936 159288936 G A SNP ARHGAP30 NM_001025598 human genbank 54_36p -1 validated silent c.858 p.V286 1 NULL - - no_errors USP21 27005 genome.wustl.edu 36 1 159397428 159397428 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 159397428 159397428 C T SNP USP21 NM_001014443 human genbank 54_36p 1 reviewed missense c.374 p.A125V 1 NULL - - no_errors MPZ 4359 genome.wustl.edu 36 1 159542580 159542580 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 159542580 159542580 G C SNP MPZ NM_000530 human genbank 54_36p -1 reviewed missense c.617 p.A206G 1 NULL HMMPfam_V-set;superfamily_Immunoglobulin - no_errors NCF2 4688 genome.wustl.edu 36 1 181796000 181796001 + Missense_Mutation DNP TC TC GT novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 TC TC TC GT TC TC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 181796000 181796001 TC GT DNP NCF2 NM_000433 human genbank 54_36p -1 reviewed missense c.1322_1321 p.E441T 0.006:0.005 NULL HMMPfam_PB1;HMMPfam_TPR_1;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_TPR-like;superfamily_CAD PB1 domains - no_errors PPFIA4 8497 genome.wustl.edu 36 1 201299692 201299692 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 201299692 201299692 G A SNP PPFIA4 NM_015053 human genbank 54_36p 1 validated missense c.1470 p.M490I 1 HMMPfam_SAM_1 HMMPfam_SAM_1;superfamily_SAM/Pointed domain;HMMPfam_SAM_2 - no_errors KMO 8564 genome.wustl.edu 36 1 239798427 239798427 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 239798427 239798427 C A SNP KMO NM_003679 human genbank 54_36p 1 validated missense c.814 p.L272I 0.99 NULL HMMPfam_DAO;superfamily_FAD/NAD(P)-binding domain - no_errors AHCTF1 25909 genome.wustl.edu 36 1 245137665 245137665 + Missense_Mutation SNP C G G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 245137665 245137665 C G SNP AHCTF1 NM_015446 human genbank 54_36p -1 validated missense c.575 p.G192A 1 NULL - - no_errors GJB5 2709 genome.wustl.edu 36 1 34996257 34996257 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 34996257 34996257 G A SNP GJB5 NM_005268 human genbank 54_36p 1 provisional missense c.739 p.D247N 0.86 NULL - - no_errors ST3GAL3 6487 genome.wustl.edu 36 1 44063084 44063084 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 44063084 44063084 C G SNP ST3GAL3 NM_174963 human genbank 54_36p 1 reviewed missense c.349 p.P117A NULL HMMPfam_Glyco_transf_29 - no_errors COL24A1 255631 genome.wustl.edu 36 1 86270166 86270173 + Frame_Shift_Del DEL CCGGAGGA CCGGAGGA - Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 CCGGAGGA CCGGAGGA CCGGAGGA - CCGGAGGA CCGGAGGA Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 86270166 86270173 CCGGAGGA - DEL COL24A1 NM_152890 human genbank 54_36p -1 validated frame_shift_del c.2032_2025 p.P676fs 0.994:0.956:0.998:1.000:1.000:1.000:0.999:0.978 NULL - (deletion:cds_exon[86270149,86270193]) no_errors ABCA4 24 genome.wustl.edu 36 1 94301362 94301362 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 1 94301362 94301362 C A SNP ABCA4 NM_000350 human genbank 54_36p -1 reviewed missense c.1654 p.V552L 0.97 NULL HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors GRK5 2869 genome.wustl.edu 36 10 121083300 121083300 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 10 121083300 121083300 C G SNP GRK5 ENST00000369106 human ensembl 54_36p 1 known missense c.180 p.S60R NULL - - no_errors ZMYND17 118490 genome.wustl.edu 36 10 74855969 74855969 + Silent SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 10 74855969 74855969 C T SNP ZMYND17 NM_001024593 human genbank 54_36p -1 validated silent c.675 p.P225 0.01 NULL - - no_errors FAM35A 54537 genome.wustl.edu 36 10 88920679 88920679 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 10 88920679 88920679 C G SNP FAM35A NM_019054 human genbank 54_36p 1 validated missense c.1931 p.A644G 1 NULL - - no_errors CADM1 23705 genome.wustl.edu 36 11 114593903 114593903 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 114593903 114593903 A T SNP CADM1 NM_014333 human genbank 54_36p -1 validated missense c.740 p.I247N 1 NULL HMMPfam_V-set;HMMPfam_ig;HMMPfam_C2-set_2;superfamily_Immunoglobulin - no_errors VSIG2 23584 genome.wustl.edu 36 11 124125917 124125920 + Frame_Shift_Del DEL GTCA GTCA - Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 GTCA GTCA GTCA - GTCA GTCA Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 124125917 124125920 GTCA - DEL VSIG2 NM_014312 human genbank 54_36p -1 provisional frame_shift_del c.330_327 p.D110fs 0.066:0.117:0.122:0.118 NULL - (deletion:cds_exon[124125820,124126027]) no_errors PAMR1 25891 genome.wustl.edu 36 11 35452801 35452801 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 35452801 35452801 G C SNP DKFZP586H2123 NM_015430 human genbank 54_36p -1 validated missense c.447 p.H149Q 1 HMMPfam_CUB HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_Trypsin;HMMPfam_EGF;superfamily_Trypsin-like serine proteases;superfamily_EGF/Laminin;superfamily_Complement control module/SCR domain - no_errors OR5D16 390144 genome.wustl.edu 36 11 55363647 55363647 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 55363647 55363647 G A SNP OR5D16 NM_001005496 human genbank 54_36p 1 provisional missense c.844 p.V282M NULL - - no_errors OR4D10 390197 genome.wustl.edu 36 11 59001705 59001705 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 59001705 59001705 T C SNP OR4D10 NM_001004705 human genbank 54_36p 1 provisional missense c.227 p.I76T 0.97 NULL - - no_errors MS4A15 219995 genome.wustl.edu 36 11 60287962 60287962 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 60287962 60287962 G T SNP MS4A15 NM_001098835 human genbank 54_36p 1 validated missense c.180 p.L60F NULL - - no_errors RPLP0P2 113157 genome.wustl.edu 36 11 61161394 61161394 + RNA SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 61161394 61161394 G A SNP RPLP0P2 NR_002775 human genbank 54_36p 1 inferred rna NULL NULL 1 - - - pseudogene NRXN2 9379 genome.wustl.edu 36 11 64146987 64146987 + Silent SNP G G T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 64146987 64146987 G T SNP NRXN2 NM_015080 human genbank 54_36p -1 reviewed silent c.3987 p.P1329 1 NULL HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 - no_errors GAB2 9846 genome.wustl.edu 36 11 77612115 77612115 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 77612115 77612115 C T SNP GAB2 NM_080491 human genbank 54_36p -1 reviewed missense c.1558 p.D520N 1 NULL HMMPfam_PH;superfamily_PH domain-like - no_errors TYR 7299 genome.wustl.edu 36 11 88564148 88564148 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 11 88564148 88564148 A C SNP TYR NM_000372 human genbank 54_36p 1 reviewed missense c.950 p.D317A 1 HMMPfam_Tyrosinase HMMPfam_Tyrosinase;superfamily_Di-copper centre-containing domain - no_errors IFT81 28981 genome.wustl.edu 36 12 109065708 109065708 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 12 109065708 109065708 C G SNP IFT81 NM_014055 human genbank 54_36p 1 validated missense c.920 p.S307C 1 NULL - - no_errors UBC 7316 genome.wustl.edu 36 12 123964117 123964117 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 12 123964117 123964117 C T SNP UBC NM_021009 human genbank 54_36p -1 validated missense c.154 p.D52N 1 HMMPfam_ubiquitin HMMPfam_ubiquitin;superfamily_Ubiquitin-like - no_errors SLCO1C1 53919 genome.wustl.edu 36 12 20777247 20777247 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 12 20777247 20777247 C G SNP SLCO1C1 NM_017435 human genbank 54_36p 1 reviewed missense c.1324 p.L442V 0.78 HMMPfam_OATP HMMPfam_OATP;HMMPfam_Kazal_2;superfamily_Kazal-type serine protease inhibitors;superfamily_MFS general substrate transporter - no_errors OR6C75 390323 genome.wustl.edu 36 12 54045559 54045559 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 12 54045559 54045559 T A SNP OR6C75 NM_001005497 human genbank 54_36p 1 provisional missense c.398 p.I133N 0.79 NULL - - no_errors LOC100128322 100128322 genome.wustl.edu 36 6 132189957 132189957 + RNA SNP A A G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 6 132189957 132189957 A G SNP LOC100128322 XR_039280 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene ARHGAP5 394 genome.wustl.edu 36 14 31631046 31631046 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 14 31631046 31631046 G A SNP ARHGAP5 NM_001030055 human genbank 54_36p 1 reviewed missense c.1420 p.V474I 1 NULL HMMPfam_RhoGAP;HMMPfam_FF;superfamily_FF domain;superfamily_GTPase activation domain GAP;HMMPfam_Ras;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors C14orf39 317761 genome.wustl.edu 36 14 59973399 59973399 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 14 59973399 59973399 G C SNP C14orf39 NM_174978 human genbank 54_36p -1 validated missense c.1681 p.Q561E 1 NULL - - no_errors ZNF609 23060 genome.wustl.edu 36 15 62579042 62579042 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 15 62579042 62579042 G A SNP ZNF609 NM_015042 human genbank 54_36p 1 provisional missense c.371 p.R124H 1 NULL - - no_errors C15orf44 81556 genome.wustl.edu 36 15 63686706 63686706 + Silent SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 15 63686706 63686706 G A SNP C15orf44 NM_030800 human genbank 54_36p -1 predicted silent c.66 p.S22 0.75 NULL - - no_errors HCN4 10021 genome.wustl.edu 36 15 71404829 71404829 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 15 71404829 71404829 C T SNP HCN4 NM_005477 human genbank 54_36p -1 reviewed missense c.1600 p.V534M 1 NULL - - no_errors TNRC6A 27327 genome.wustl.edu 36 16 24712301 24712301 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 16 24712301 24712301 G T SNP TNRC6A NM_014494 human genbank 54_36p 1 reviewed missense c.3182 p.G1061V 1 NULL - - no_errors DOC2A 8448 genome.wustl.edu 36 16 29928083 29928083 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 16 29928083 29928083 C G SNP DOC2A NM_003586 human genbank 54_36p -1 reviewed missense c.358 p.D120H 1 HMMPfam_C2 HMMPfam_C2;superfamily_C2 domain (Calcium/lipid-binding domain CaLB) - no_errors DNAH9 1770 genome.wustl.edu 36 17 11613331 11613331 + Silent SNP C T T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C T T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 17 11613331 11613331 C T SNP DNAH9 NM_001372 human genbank 54_36p 1 reviewed silent c.7512 p.N2504 0.96 NULL HMMPfam_Dynein_heavy;superfamily_Acyl-CoA dehydrogenase C-terminal domain-like;HMMPfam_AAA_5;HMMPfam_DHC_N1;HMMPfam_DHC_N2;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors RPL23A 6147 genome.wustl.edu 36 17 24074728 24074728 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 17 24074728 24074728 G C SNP RPL23A NM_000984 human genbank 54_36p 1 reviewed missense c.399 p.E133D 1 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7518928 7518928 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 17 7518928 7518928 C T SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.646 p.V216M 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors LOC100130518 100130518 genome.wustl.edu 36 19 22290347 22290347 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 19 22290347 22290347 C G SNP LOC100130518 XM_001719773 human genbank 54_36p 1 model missense c.2405 p.T802S 0.96 NULL - - no_errors CREB3L3 84699 genome.wustl.edu 36 19 4108240 4108240 + Silent SNP A A G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 19 4108240 4108240 A G SNP CREB3L3 NM_032607 human genbank 54_36p 1 provisional silent c.405 p.T135 NULL - - no_errors ZNF320 162967 genome.wustl.edu 36 19 58078740 58078740 + Missense_Mutation SNP G A G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G A G G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 19 58078740 58078740 G A SNP ZNF320 ENST00000391780 human ensembl 54_36p -1 known missense c.172 p.H58Y NULL - - no_start_codon MUC16 94025 genome.wustl.edu 36 19 8929974 8929974 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 19 8929974 8929974 G T SNP MUC16 NM_024690 human genbank 54_36p -1 validated missense c.18472 p.Q6158K NULL HMMPfam_SEA;superfamily_Immunoglobulin;superfamily_SEA domain - no_errors MUC16 94025 genome.wustl.edu 36 19 8933137 8933137 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 19 8933137 8933137 C G SNP MUC16 NM_024690 human genbank 54_36p -1 validated missense c.15309 p.K5103N NULL HMMPfam_SEA;superfamily_Immunoglobulin;superfamily_SEA domain - no_errors LCT 3938 genome.wustl.edu 36 2 136286558 136286558 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 2 136286558 136286558 C G SNP LCT NM_002299 human genbank 54_36p -1 reviewed missense c.2146 p.V716L 0.04 HMMPfam_Glyco_hydro_1 HMMPfam_Glyco_hydro_1;superfamily_(Trans)glycosidases - no_errors LRP1B 53353 genome.wustl.edu 36 2 141174615 141174615 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 2 141174615 141174615 C T SNP LRP1B NM_018557 human genbank 54_36p -1 validated missense c.6473 p.C2158Y 1 HMMPfam_EGF HMMPfam_Ldl_recept_a;HMMPfam_EGF;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_YWTD domain;HMMPfam_Ldl_recept_b;HMMPfam_NHL;superfamily_LDL receptor-like module - no_errors APOB 338 genome.wustl.edu 36 2 21088665 21088665 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 2 21088665 21088665 A T SNP APOB NM_000384 human genbank 54_36p -1 reviewed missense c.4580 p.L1527H 0.04 NULL HMMPfam_Vitellogenin_N;HMMPfam_DUF1081;HMMPfam_DUF1943 - no_errors NLRC4 58484 genome.wustl.edu 36 2 32328942 32328942 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 2 32328942 32328942 C A SNP NLRC4 NM_021209 human genbank 54_36p -1 validated missense c.1495 p.V499L NULL - - no_errors DYNC2LI1 51626 genome.wustl.edu 36 2 43864168 43864168 + Silent SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 2 43864168 43864168 G A SNP DYNC2LI1 NM_016008 human genbank 54_36p 1 validated silent c.132 p.K44 1 NULL - - no_errors LHCGR 3973 genome.wustl.edu 36 2 48769227 48769227 + Splice_Site SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 2 48769227 48769227 C T SNP LHCGR ENST00000403273 human ensembl 54_36p -1 known splice_site c.948-1 e11-1 1 - - - no_errors VWA3B 200403 genome.wustl.edu 36 2 98170896 98170896 + Silent SNP A A C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 2 98170896 98170896 A C SNP VWA3B NM_144992 human genbank 54_36p 1 provisional silent c.1338 p.A446 1 NULL - - no_errors OTOR 56914 genome.wustl.edu 36 20 16677556 16677556 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 20 16677556 16677556 G A SNP OTOR NM_020157 human genbank 54_36p 1 reviewed missense c.160 p.D54N 1 NULL - - no_errors SEC14L3 266629 genome.wustl.edu 36 22 29188108 29188108 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 22 29188108 29188108 T C SNP SEC14L3 NM_174975 human genbank 54_36p -1 reviewed missense c.736 p.T246A 1 HMMPfam_CRAL_TRIO HMMPfam_EMP24_GP25L;HMMPfam_CRAL_TRIO;superfamily_CRAL/TRIO domain;HMMPfam_CRAL_TRIO_N;superfamily_CRAL/TRIO N-terminal domain;superfamily_Supernatant protein factor (SPF) C-terminal domain - no_errors KALRN 8997 genome.wustl.edu 36 3 125895955 125895955 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 3 125895955 125895955 C G SNP KALRN NM_001024660 human genbank 54_36p 1 reviewed missense c.7492 p.P2498A 1 NULL - - no_errors PIK3CB 5291 genome.wustl.edu 36 3 139906020 139906020 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 3 139906020 139906020 A C SNP PIK3CB NM_006219 human genbank 54_36p -1 provisional missense c.1536 p.I512M 1 NULL HMMPfam_PI3K_rbd;HMMPfam_PI3_PI4_kinase;HMMPfam_PI3Ka;HMMPfam_PI3K_C2;HMMPfam_PI3K_p85B;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_Protein kinase-like (PK-like);superfamily_ARM repeat;superfamily_Ubiquitin-like - no_errors SLC6A6 6533 genome.wustl.edu 36 3 14498336 14498336 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 3 14498336 14498336 G C SNP SLC6A6 NM_003043 human genbank 54_36p 1 validated missense c.1705 p.E569Q 0.66 NULL - - no_errors GORASP1 64689 genome.wustl.edu 36 3 39119205 39119205 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 3 39119205 39119205 G A SNP GORASP1 NM_031899 human genbank 54_36p -1 reviewed missense c.316 p.R106C 0.96 NULL - - no_errors CCR3 1232 genome.wustl.edu 36 3 46282600 46282600 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 3 46282600 46282600 T C SNP CCR3 NM_001837 human genbank 54_36p 1 reviewed missense c.947 p.F316S 0.65 NULL - - no_errors TRAIP 10293 genome.wustl.edu 36 3 49860597 49860597 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 3 49860597 49860597 G C SNP TRAIP NM_005879 human genbank 54_36p -1 reviewed missense c.139 p.P47A 1 HMMPfam_zf-C3HC4 zf-C3HC4;HMMPfam_zf-C3HC4 - no_errors FLNB 2317 genome.wustl.edu 36 3 58086364 58086364 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 3 58086364 58086364 G C SNP FLNB NM_001457 human genbank 54_36p 1 validated missense c.3915 p.E1305D 1 HMMPfam_Filamin HMMPfam_Filamin;HMMPfam_CH;superfamily_E set domains;superfamily_Calponin-homology domain CH-domain - no_errors PI4K2B 55300 genome.wustl.edu 36 4 24879227 24879227 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 4 24879227 24879227 G C SNP PI4K2B NM_018323 human genbank 54_36p 1 validated missense c.1143 p.L381F 1 HMMPfam_PI3_PI4_kinase HMMPfam_PI3_PI4_kinase - no_errors PCDHB12 56124 genome.wustl.edu 36 5 140570694 140570694 + Silent SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 5 140570694 140570694 C T SNP PCDHB12 NM_018932 human genbank 54_36p 1 reviewed silent c.2031 p.A677 0 NULL - - no_errors ZNF354B 117608 genome.wustl.edu 36 5 178242706 178242706 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 5 178242706 178242706 G A SNP ZNF354B NM_058230 human genbank 54_36p 1 validated missense c.647 p.C216Y 0.76 NULL - - no_errors HEATR7B2 133558 genome.wustl.edu 36 5 41068913 41068913 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 5 41068913 41068913 A G SNP HEATR7B2 NM_173489 human genbank 54_36p -1 validated missense c.2348 p.I783T 0.79 NULL - - no_errors AIM1 202 genome.wustl.edu 36 6 107075882 107075907 + Frame_Shift_Del DEL AGGCTAATCATATTGAAAGTGTTATT AGGCTAATCATATTGAAAGTGTTATT - Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 AGGCTAATCATATTGAAAGTGTTATT AGGCTAATCATATTGAAAGTGTTATT AGGCTAATCATATTGAAAGTGTTATT - AGGCTAATCATATTGAAAGTGTTATT AGGCTAATCATATTGAAAGTGTTATT Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 6 107075882 107075907 AGGCTAATCATATTGAAAGTGTTATT - DEL AIM1 NM_001624 human genbank 54_36p 1 validated frame_shift_del c.2882_2907 p.A962fs 0.000:0.000:0.000:0.001:0.000:0.001:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.060:0.061:0.033:0.006:0.004:0.001:0.001:0.001:0.000:0.000:0.004:0.002 NULL HMMPfam_Ricin_B_lectin,HMMPfam_Crystall,superfamily_Ricin B-like lectins,superfamily_gamma-Crystallin-like (deletion:cds_exon[107073699,107076021]) no_errors TCP11 6954 genome.wustl.edu 36 6 35194074 35194074 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 6 35194074 35194074 T G SNP TCP11 NM_001093728 human genbank 54_36p -1 validated missense c.1501 p.T501P 0.45 NULL - - no_errors ZNF292 23036 genome.wustl.edu 36 6 88028184 88028184 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 6 88028184 88028184 G T SNP ZNF292 NM_015021 human genbank 54_36p 1 validated missense c.8118 p.M2706I 0.05 NULL - - no_errors RELN 5649 genome.wustl.edu 36 7 103001849 103001849 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 7 103001849 103001849 A C SNP RELN NM_005045 human genbank 54_36p -1 reviewed missense c.4437 p.D1479E 1 NULL HMMPfam_BNR;HMMPfam_Reeler;HMMPfam_EGF_2 - no_errors SLC26A3 1811 genome.wustl.edu 36 7 107201769 107201769 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 7 107201769 107201769 T C SNP SLC26A3 NM_000111 human genbank 54_36p -1 reviewed missense c.1839 p.I613M 0.04 NULL - - no_errors GTF2IRD2B 389524 genome.wustl.edu 36 7 74202557 74202557 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 7 74202557 74202557 A G SNP GTF2IRD2B NM_001003795 human genbank 54_36p 1 reviewed missense c.2368 p.K790E 0.93 NULL - - no_errors CCDC146 57639 genome.wustl.edu 36 7 76741878 76741878 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 7 76741878 76741878 A C SNP CCDC146 NM_020879 human genbank 54_36p 1 validated missense c.1413 p.Q471H 1 NULL - - no_errors SAMD9L 219285 genome.wustl.edu 36 7 92599291 92599291 + Silent SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 7 92599291 92599291 C T SNP SAMD9L NM_152703 human genbank 54_36p -1 validated silent c.3930 p.L1310 NULL - - no_errors RGS22 26166 genome.wustl.edu 36 8 101186797 101186797 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 8 101186797 101186797 G A SNP RGS22 NM_015668 human genbank 54_36p -1 validated missense c.35 p.T12I 0.34 NULL - - no_errors ENPP2 5168 genome.wustl.edu 36 8 120644337 120644337 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 8 120644337 120644337 G T SNP ENPP2 NM_006209 human genbank 54_36p -1 reviewed missense c.2518 p.P840T 0.93 HMMPfam_Endonuclease_NS HMMPfam_Somatomedin_B;HMMPfam_Endonuclease_NS;HMMPfam_Phosphodiest;superfamily_Alkaline phosphatase-like;superfamily_His-Me finger endonucleases;superfamily_Somatomedin B domain - no_errors ARFGEF1 10565 genome.wustl.edu 36 8 68341919 68341919 + Silent SNP T T C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 8 68341919 68341919 T C SNP ARFGEF1 NM_006421 human genbank 54_36p -1 reviewed silent c.1773 p.Q591 1 NULL - - no_errors CDH17 1015 genome.wustl.edu 36 8 95241475 95241475 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 8 95241475 95241475 C A SNP CDH17 NM_004063 human genbank 54_36p -1 reviewed missense c.1451 p.S484I 1 HMMPfam_Cadherin HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors ENSG00000222903 0 genome.wustl.edu 36 4 85828147 85828147 + RNA SNP G G A novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 4 85828147 85828147 G A SNP ENSG00000222903 ENST00000410971 human ensembl 54_36p -1 novel rna NULL NULL 0.99 - - - no_errors TRAF1 7185 genome.wustl.edu 36 9 122713453 122713453 + Missense_Mutation SNP C C T Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 9 122713453 122713453 C T SNP TRAF1 NM_005658 human genbank 54_36p -1 reviewed missense c.865 p.V289I 0.015 NULL - - no_errors RPS6 6194 genome.wustl.edu 36 9 19369608 19369610 + In_Frame_Del DEL GAT GAT - Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 GAT GAT GAT - GAT GAT Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 9 19369608 19369610 GAT - DEL RPS6 NM_001010 human genbank 54_36p -1 reviewed in_frame_del c.15_13 p.I5in_frame_del 1.000:1.000:1.000 HMMPfam_Ribosomal_S6e HMMPfam_Ribosomal_S6e (deletion:cds_exon[19369485,19369616]) no_errors SPANXN3 139067 genome.wustl.edu 36 X 142424335 142424335 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 X 142424335 142424335 G C SNP SPANXN3 NM_001009609 human genbank 54_36p -1 validated missense c.401 p.S134C 0.05 NULL - - no_errors XG 7499 genome.wustl.edu 36 X 2739383 2739383 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 X 2739383 2739383 T C SNP XG NM_175569 human genbank 54_36p 1 reviewed missense c.416 p.M139T 0.02 NULL - - no_errors LOC648603 648603 genome.wustl.edu 36 X 48519651 48519652 + RNA DNP CC CC AT novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 CC CC CC AT CC CC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 X 48519651 48519652 CC AT DNP LOC648603 XR_038238 human genbank 54_36p -1 model rna NULL NULL 1.000:1.000 - - - pseudogene IQSEC2 23096 genome.wustl.edu 36 X 53300626 53300626 + Silent SNP C C T novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 X 53300626 53300626 C T SNP IQSEC2 NM_015075 human genbank 54_36p -1 validated silent c.597 p.A199 0.59 NULL HMMPfam_IQ;HMMPfam_Sec7;superfamily_Sec7 domain;superfamily_PH domain-like;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors LAS1L 81887 genome.wustl.edu 36 X 64660776 64660776 + Silent SNP C C G novel Unknown TCGA-24-1435-01A-01W-0549-09 TCGA-24-1435-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 28d236f6-dddc-48c2-be30-b1568a4d6055 e04c70ce-9ef3-41b0-b45e-73e1c22c8472 X 64660776 64660776 C G SNP LAS1L NM_031206 human genbank 54_36p -1 provisional silent c.1185 p.T395 1 NULL - - no_errors