Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error PLOD1 5351 genome.wustl.edu 36 1 11946867 11946867 + Silent SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 1 11946867 11946867 C T SNP PLOD1 NM_000302 human genbank 54_36p 1 reviewed silent c.1251 p.N417 1 NULL HMMPfam_2OG-FeII_Oxy - no_errors POLR3C 10623 genome.wustl.edu 36 1 144319562 144319562 + Silent SNP A A G novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 1 144319562 144319562 A G SNP POLR3C NM_006468 human genbank 54_36p -1 provisional silent c.492 p.P164 0.09 HMMPfam_RNA_pol_Rpc82 HMMPfam_RNA_pol_Rpc82;HMMPfam_HTH_9 - no_errors PPFIA4 8497 genome.wustl.edu 36 1 201281644 201281644 + Missense_Mutation SNP G C C novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 1 201281644 201281644 G C SNP PPFIA4 ENST00000367238 human ensembl 54_36p 1 known missense c.911 p.R304P 1 NULL - - no_errors TSPAN1 10103 genome.wustl.edu 36 1 46423344 46423344 + Silent SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 1 46423344 46423344 C T SNP TSPAN1 NM_005727 human genbank 54_36p 1 reviewed silent c.564 p.T188 NULL - - no_errors C10orf137 26098 genome.wustl.edu 36 10 127399835 127399835 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 10 127399835 127399835 C G SNP C10orf137 NM_015608 human genbank 54_36p 1 validated missense c.181 p.R61G 0.99 NULL superfamily_TPR-like - no_errors FXYD2 100287298 genome.wustl.edu 36 11 117196784 117196784 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 11 117196784 117196784 C T SNP FXYD2 NM_001680 human genbank 54_36p -1 reviewed missense c.176 p.R59K 0.24 NULL - - no_errors ARID4A 5926 genome.wustl.edu 36 14 57901182 57901182 + Silent SNP A A T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 14 57901182 57901182 A T SNP ARID4A NM_002892 human genbank 54_36p 1 reviewed silent c.2622 p.G874 0.95 NULL HMMPfam_ARID;HMMPfam_RBB1NT;superfamily_ARID-like;superfamily_Tudor/PWWP/MBT - no_errors TSHR 7253 genome.wustl.edu 36 14 80679090 80679090 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 14 80679090 80679090 G C SNP TSHR NM_000369 human genbank 54_36p 1 reviewed missense c.935 p.R312T 0.96 NULL superfamily_L domain-like;superfamily_Family A G protein-coupled receptor-like;7tm_1;HMMPfam_7tm_1;LRR_1;HMMPfam_LRR_1 - no_errors KCNK10 54207 genome.wustl.edu 36 14 87799467 87799467 + Silent SNP A A C novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 14 87799467 87799467 A C SNP KCNK10 NM_138317 human genbank 54_36p -1 reviewed silent c.234 p.V78 1 NULL HMMPfam_Ion_trans_2;superfamily_Voltage-gated potassium channels - no_errors OTUB2 78990 genome.wustl.edu 36 14 93580777 93580777 + Silent SNP G G T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 14 93580777 93580777 G T SNP OTUB2 NM_023112 human genbank 54_36p 1 validated silent c.396 p.V132 1 NULL superfamily_Cysteine proteinases - no_errors FHOD1 29109 genome.wustl.edu 36 16 65828778 65828778 + Silent SNP C C A novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 16 65828778 65828778 C A SNP FHOD1 NM_013241 human genbank 54_36p -1 reviewed silent c.858 p.A286 0.19 NULL HMMPfam_FH2;superfamily_Formin homology 2 domain (FH2 domain);superfamily_ARM repeat - no_errors SRP68 6730 genome.wustl.edu 36 17 71551517 71551517 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 17 71551517 71551517 C A SNP SRP68 NM_014230 human genbank 54_36p -1 reviewed missense c.1512 p.K504N 0.82 NULL superfamily_TPR-like - no_errors TP53 7157 genome.wustl.edu 36 17 7517846 7517846 + Missense_Mutation SNP G A A novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 17 7517846 7517846 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.817 p.R273C 0.8 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors TMX3 54495 genome.wustl.edu 36 18 64532110 64532110 + Silent SNP T A A novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 18 64532110 64532110 T A SNP TMX3 NM_019022 human genbank 54_36p -1 validated silent c.54 p.V18 0.14 NULL - - no_errors COMP 1311 genome.wustl.edu 36 19 18762377 18762377 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 19 18762377 18762377 C T SNP COMP NM_000095 human genbank 54_36p -1 reviewed missense c.211 p.A71T 1 NULL HMMPfam_TSP_3;HMMPfam_EGF;HMMPfam_TSP_C;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_EGF_CA;superfamily_TSP type-3 repeat;superfamily_EGF/Laminin - no_errors PTBP1 5725 genome.wustl.edu 36 19 756531 756531 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 19 756531 756531 C T SNP PTBP1 NM_002819 human genbank 54_36p 1 reviewed missense c.932 p.A311V 1 NULL HMMPfam_RRM_1;superfamily_RNA-binding domain RBD - no_errors MYO1F 4542 genome.wustl.edu 36 19 8493323 8493323 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 19 8493323 8493323 A G SNP MYO1F NM_012335 human genbank 54_36p -1 provisional missense c.3158 p.V1053A 0.12 HMMPfam_SH3_1 HMMPfam_IQ;HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_Myosin_head;HMMPfam_Myosin_TH1;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors LOC100133326 100133326 genome.wustl.edu 36 3 197149395 197149395 + RNA SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 3 197149395 197149395 C T SNP LOC100133326 XR_037589 human genbank 54_36p 1 model rna NULL NULL 0.18 - - - pseudogene LOC643194 643194 genome.wustl.edu 36 2 161846027 161846027 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 2 161846027 161846027 C A SNP LOC643194 XM_931396 human genbank 54_36p -1 model missense c.178 p.A60S 0 NULL - - no_errors CRIM1 51232 genome.wustl.edu 36 2 36598086 36598086 + Silent SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 2 36598086 36598086 C T SNP CRIM1 NM_016441 human genbank 54_36p 1 provisional silent c.2103 p.C701 1 HMMPfam_VWC HMMPfam_VWC;HMMPfam_Antistasin;superfamily_Leech antihemostatic proteins - no_errors KALRN 8997 genome.wustl.edu 36 3 125470766 125470766 + Missense_Mutation SNP C T T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 3 125470766 125470766 C T SNP KALRN NM_001024660 human genbank 54_36p 1 reviewed missense c.937 p.R313W 1 NULL - - no_errors ECE2 9718 genome.wustl.edu 36 3 185458193 185458193 + Silent SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 3 185458193 185458193 C T SNP ECE2 NM_014693 human genbank 54_36p 1 validated silent c.435 p.T145 0.27 NULL - - no_errors ARSJ 79642 genome.wustl.edu 36 4 115043527 115043527 + Silent SNP G G A novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 4 115043527 115043527 G A SNP ARSJ NM_024590 human genbank 54_36p -1 validated silent c.1152 p.L384 1 NULL - - no_errors DCHS2 54798 genome.wustl.edu 36 4 155461499 155461499 + Missense_Mutation SNP T A A novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 T T A A T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 4 155461499 155461499 T A SNP DCHS2 NM_017639 human genbank 54_36p -1 validated missense c.3137 p.E1046V 1 NULL - - no_errors SEPT8 23176 genome.wustl.edu 36 5 132126087 132126087 + Silent SNP G G A novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 5 132126087 132126087 G A SNP SEPT8 NM_001098811 human genbank 54_36p -1 validated silent c.684 p.N228 0.98 NULL - - no_errors ANKHD1-EIF4EBP3 404734 genome.wustl.edu 36 5 139795972 139795972 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 5 139795972 139795972 C T SNP ANKHD1-EIF4EBP3 NM_020690 human genbank 54_36p 1 reviewed missense c.406 p.R136C 1 NULL - - no_errors CDH9 1007 genome.wustl.edu 36 5 26951726 26951726 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 5 26951726 26951726 C A SNP CDH9 NM_016279 human genbank 54_36p -1 reviewed missense c.292 p.G98C 1 HMMPfam_Cadherin HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors C7orf66 154907 genome.wustl.edu 36 7 108311794 108311794 + Missense_Mutation SNP A T T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 7 108311794 108311794 A T SNP C7orf66 NM_001024607 human genbank 54_36p -1 predicted missense c.32 p.L11H NULL - - no_errors GRHL2 79977 genome.wustl.edu 36 8 102701076 102701076 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 8 102701076 102701076 G T SNP GRHL2 NM_024915 human genbank 54_36p 1 validated missense c.1232 p.C411F 1 NULL - - no_errors OC90 729330 genome.wustl.edu 36 8 133106144 133106144 + Nonsense_Mutation SNP G T T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 8 133106144 133106144 G T SNP OC90 NM_001080399 human genbank 54_36p -1 validated nonsense c.1200 p.C400* 1 NULL - - no_errors SGCZ 137868 genome.wustl.edu 36 8 14139487 14139487 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 8 14139487 14139487 C T SNP SGCZ NM_139167 human genbank 54_36p -1 reviewed missense c.409 p.G137R 1 NULL - - no_errors OR2S2 56656 genome.wustl.edu 36 9 35947870 35947870 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c 9 35947870 35947870 T C SNP OR2S2 NM_019897 human genbank 54_36p -1 provisional missense c.196 p.T66A 0.15 NULL - - no_errors RPA4 29935 genome.wustl.edu 36 X 96026140 96026140 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1426-01A-01W-0549-09 TCGA-24-1426-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 063f8696-2c9d-4af4-a863-df10c42a5ea8 a3986ae3-7431-4383-b8fc-976e58f7725c X 96026140 96026140 G T SNP RPA4 NM_013347 human genbank 54_36p 1 reviewed missense c.175 p.V59L 0 NULL "superfamily_""Winged helix"" DNA-binding domain;superfamily_Nucleic acid-binding proteins;HMMPfam_tRNA_anti;HMMPfam_RPA_C" - no_errors