Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
LOC343495	343495	genome.wustl.edu	36	1	119563486	119563486	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	119563486	119563486	C	T	SNP	LOC343495	XR_016540	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
GOLPH3L	55204	genome.wustl.edu	36	1	148900984	148900984	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	148900984	148900984	A	T	SNP	GOLPH3L	NM_018178	human	genbank	54_36p	-1	reviewed	missense	c.360	p.D120E	1	NULL	-	-	no_errors
RASAL2	9462	genome.wustl.edu	36	1	176687333	176687333	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	176687333	176687333	G	C	SNP	RASAL2	NM_170692	human	genbank	54_36p	1	reviewed	missense	c.1578	p.E526D	1	HMMPfam_RasGAP	HMMPfam_C2;HMMPfam_RasGAP;superfamily_GTPase activation domain GAP;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_PH domain-like;superfamily_Myosin phosphatase inhibitor 17kDa protein CPI-17	-	no_errors
RGS8	85397	genome.wustl.edu	36	1	180883954	180883954	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	180883954	180883954	G	C	SNP	RGS8	NM_033345	human	genbank	54_36p	-1	reviewed	missense	c.355	p.L119V	1	NULL	-	-	no_errors
RGL1	23179	genome.wustl.edu	36	1	182083355	182083355	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	182083355	182083355	A	G	SNP	RGL1	NM_015149	human	genbank	54_36p	1	validated	silent	c.276	p.T92	0.98	NULL	HMMPfam_RA;HMMPfam_RasGEF_N;HMMPfam_RasGEF;superfamily_Ras GEF;superfamily_Ubiquitin-like	-	no_errors
RGS18	64407	genome.wustl.edu	36	1	190395051	190395051	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	190395051	190395051	T	G	SNP	RGS18	NM_130782	human	genbank	54_36p	1	reviewed	silent	c.198	p.S66	0.29	NULL	-	-	no_errors
FCAMR	83953	genome.wustl.edu	36	1	205207598	205207598	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	205207598	205207598	C	G	SNP	FCAMR	ENST00000400962	human	ensembl	54_36p	-1	known	missense	c.61	p.E21Q		NULL	-	-	no_errors
CR1	1378	genome.wustl.edu	36	1	205851743	205851743	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	205851743	205851743	A	T	SNP	CR1	NM_000651	human	genbank	54_36p	1	reviewed	missense	c.6394	p.S2132C		NULL	-	-	no_errors
USP48	84196	genome.wustl.edu	36	1	21894209	21894209	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	21894209	21894209	T	A	SNP	USP48	NM_032236	human	genbank	54_36p	-1	reviewed	missense	c.2820	p.K940N	1	NULL	-	-	no_errors
TESK2	10420	genome.wustl.edu	36	1	45583360	45583360	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	1	45583360	45583360	G	C	SNP	TESK2	NM_007170	human	genbank	54_36p	-1	reviewed	silent	c.1455	p.R485	0.98	NULL	-	-	no_errors
SYCE1	93426	genome.wustl.edu	36	10	135219322	135219322	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	10	135219322	135219322	G	T	SNP	SYCE1	NM_130784	human	genbank	54_36p	-1	validated	missense	c.563	p.T188N		NULL	-	-	no_errors
C10orf140	387640	genome.wustl.edu	36	10	21844172	21844172	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	10	21844172	21844172	C	A	SNP	C10orf140	NM_207371	human	genbank	54_36p	-1	validated	silent	c.2586	p.G862	1	NULL	-	-	no_errors
KIAA1217	56243	genome.wustl.edu	36	10	24802216	24802216	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	10	24802216	24802216	C	T	SNP	KIAA1217	NM_019590	human	genbank	54_36p	1	validated	silent	c.900	p.P300	0.23	NULL	-	-	no_errors
ERCC6	2074	genome.wustl.edu	36	10	50378705	50378705	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	10	50378705	50378705	G	A	SNP	ERCC6	NM_000124	human	genbank	54_36p	-1	reviewed	nonsense	c.1570	p.Q524*	1	HMMPfam_SNF2_N	"HMMPfam_SNF2_N;HMMPfam_Helicase_C;superfamily_""Winged helix"" DNA-binding domain;superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CCDC15	80071	genome.wustl.edu	36	11	124362919	124362919	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	11	124362919	124362919	C	G	SNP	CCDC15	NM_025004	human	genbank	54_36p	1	validated	silent	c.1587	p.G529	0.05	NULL	-	-	no_errors
SOX6	55553	genome.wustl.edu	36	11	16296734	16296734	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	11	16296734	16296734	T	G	SNP	SOX6	NM_033326	human	genbank	54_36p	-1	reviewed	silent	c.279	p.R93	1	NULL	-	-	no_errors
F2	2147	genome.wustl.edu	36	11	46704017	46704017	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	11	46704017	46704017	C	T	SNP	F2	NM_000506	human	genbank	54_36p	1	reviewed	missense	c.592	p.R198C	0.016	NULL	-	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92172134	92172134	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	11	92172134	92172134	A	T	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.6307	p.I2103F	1	NULL	-	-	no_errors
CCDC60	160777	genome.wustl.edu	36	12	118401332	118401332	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	12	118401332	118401332	G	A	SNP	CCDC60	NM_178499	human	genbank	54_36p	1	validated	missense	c.392	p.R131H	0.18	NULL	-	-	no_errors
POLE	5426	genome.wustl.edu	36	12	131711577	131711577	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	12	131711577	131711577	G	T	SNP	POLE	NM_006231	human	genbank	54_36p	-1	validated	missense	c.6734	p.T2245N	1	NULL	HMMPfam_DNA_pol_B_exo;HMMPfam_DNA_pol_B;superfamily_Ribonuclease H-like;HMMPfam_DUF1744;superfamily_DNA/RNA polymerases	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26646683	26646683	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	12	26646683	26646683	G	T	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.3565	p.L1189I	1	NULL	-	-	no_errors
ENSG00000214298	0	genome.wustl.edu	36	10	126845421	126845421	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	10	126845421	126845421	G	T	SNP	ENSG00000214298	ENST00000398057	human	ensembl	54_36p	1	known	silent	c.186	p.L62	1	NULL	-	-	no_stop_codon
KBTBD6	89890	genome.wustl.edu	36	13	40603167	40603167	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	13	40603167	40603167	A	C	SNP	KBTBD6	NM_152903	human	genbank	54_36p	-1	validated	missense	c.1481	p.M494R	1	NULL	HMMPfam_Kelch_1;superfamily_Galactose oxidase central domain;HMMPfam_BACK;HMMPfam_BTB;superfamily_POZ domain	-	no_errors
HTR2A	3356	genome.wustl.edu	36	13	46364583	46364583	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	13	46364583	46364583	A	G	SNP	HTR2A	NM_000621	human	genbank	54_36p	-1	validated	missense	c.556	p.F186L	1	HMMPfam_7tm_1	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
MED4	29079	genome.wustl.edu	36	13	47562502	47562502	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	13	47562502	47562502	C	A	SNP	MED4	NM_014166	human	genbank	54_36p	-1	provisional	missense	c.179	p.G60V	1	NULL	-	-	no_errors
C14orf93	60686	genome.wustl.edu	36	14	22535179	22535179	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	14	22535179	22535179	G	C	SNP	C14orf93	NM_021944	human	genbank	54_36p	-1	validated	missense	c.736	p.L246V	1	NULL	-	-	no_errors
LOC646139	646139	genome.wustl.edu	36	15	18981653	18981653	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	15	18981653	18981653	C	A	SNP	LOC646139	XR_037550	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
SHF	90525	genome.wustl.edu	36	15	43251793	43251793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	15	43251793	43251793	G	T	SNP	SHF	NM_138356	human	genbank	54_36p	-1	validated	missense	c.809	p.P270Q	0.99	NULL	-	-	no_errors
LOC729217	729217	genome.wustl.edu	36	16	62851823	62851823	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	16	62851823	62851823	G	A	SNP	LOC729217	XR_015483	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.02	-	-	-	pseudogene
HOXB1	3211	genome.wustl.edu	36	17	43963034	43963034	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	17	43963034	43963034	T	A	SNP	HOXB1	NM_002144	human	genbank	54_36p	-1	reviewed	missense	c.232	p.S78C	0.82	NULL	HMMPfam_Homeobox;superfamily_Homeodomain-like	-	no_errors
CA4	762	genome.wustl.edu	36	17	55590489	55590490	+	Missense_Mutation	DNP	GG	GG	TC	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	GG	GG	GG	TC	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	17	55590489	55590490	GG	TC	DNP	CA4	NM_000717	human	genbank	54_36p	1	reviewed	missense	c.644_645	p.R215I	0.001:0.002	HMMPfam_Carb_anhydrase	HMMPfam_Carb_anhydrase;superfamily_Carbonic anhydrase	-	no_errors
ABCA6	23460	genome.wustl.edu	36	17	64588876	64588876	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	17	64588876	64588876	G	T	SNP	ABCA6	NM_080284	human	genbank	54_36p	-1	reviewed	missense	c.4622	p.S1541Y	0.75	NULL	HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
ZNF799	90576	genome.wustl.edu	36	19	12363419	12363419	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	19	12363419	12363419	A	G	SNP	ZNF799	NM_001080821	human	genbank	54_36p	-1	validated	missense	c.793	p.Y265H		NULL	-	-	no_errors
COX6B1	1340	genome.wustl.edu	36	19	40831626	40831626	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	19	40831626	40831626	C	T	SNP	COX6B1	ENST00000392201	human	ensembl	54_36p	1	known	nonsense	c.16	p.Q6*		NULL	-	-	no_errors
LOC442041	442041	genome.wustl.edu	36	2	110554118	110554118	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	2	110554118	110554118	C	A	SNP	LOC442041	XR_016876	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
BOLL	66037	genome.wustl.edu	36	2	198354767	198354767	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	2	198354767	198354767	A	G	SNP	BOLL	NM_197970	human	genbank	54_36p	-1	validated	missense	c.89	p.L30S	1	NULL	-	-	no_errors
SDC1	6382	genome.wustl.edu	36	2	20267218	20267218	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	2	20267218	20267218	C	A	SNP	SDC1	NM_001006946	human	genbank	54_36p	-1	reviewed	missense	c.464	p.R155M	0.06	HMMPfam_Syndecan	HMMPfam_Syndecan	-	no_errors
TRPM8	79054	genome.wustl.edu	36	2	234527354	234527355	+	Missense_Mutation	DNP	GC	GC	AT	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	GC	GC	GC	AT	GC	GC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	2	234527354	234527355	GC	AT	DNP	TRPM8	NM_024080	human	genbank	54_36p	1	validated	missense	c.1195_1196	p.A399I	1.000:1.000	NULL	-	-	no_errors
HEATR5B	54497	genome.wustl.edu	36	2	37069351	37069351	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	2	37069351	37069351	C	T	SNP	HEATR5B	NM_019024	human	genbank	54_36p	-1	validated	silent	c.5853	p.A1951	0.96	NULL	-	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40147880	40147880	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	20	40147880	40147880	T	C	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	missense	c.3931	p.T1311A	1	NULL	-	-	no_errors
SLCO4A1	28231	genome.wustl.edu	36	20	60762296	60762296	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	20	60762296	60762296	C	T	SNP	SLCO4A1	NM_016354	human	genbank	54_36p	1	validated	silent	c.975	p.A325	0.03	NULL	-	-	no_errors
C21orf7	56911	genome.wustl.edu	36	21	29454222	29454222	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	21	29454222	29454222	G	C	SNP	C21orf7	NM_020152	human	genbank	54_36p	1	provisional	missense	c.522	p.K174N	1	NULL	-	-	no_errors
CECR2	27443	genome.wustl.edu	36	22	16396909	16396909	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	22	16396909	16396909	A	G	SNP	CECR2	ENST00000400585	human	ensembl	54_36p	1	known	missense	c.1160	p.K387R	0.56	NULL	-	-	no_errors
UPB1	51733	genome.wustl.edu	36	22	23249597	23249597	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	22	23249597	23249597	C	G	SNP	UPB1	NM_016327	human	genbank	54_36p	1	reviewed	missense	c.927	p.D309E	1	NULL	HMMPfam_CN_hydrolase;superfamily_Carbon-nitrogen hydrolase	-	no_errors
ALCAM	214	genome.wustl.edu	36	3	106751664	106751664	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	3	106751664	106751664	G	C	SNP	ALCAM	NM_001627	human	genbank	54_36p	1	validated	missense	c.1378	p.E460Q	1	NULL	HMMPfam_ig;HMMPfam_C2-set_2;superfamily_Immunoglobulin	-	no_errors
RYK	6259	genome.wustl.edu	36	3	135390442	135390442	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	3	135390442	135390442	A	G	SNP	RYK	ENST00000296084	human	ensembl	54_36p	-1	known	missense	c.1034	p.I345T	1	HMMPfam_Pkinase_Tyr	Pkinase_Tyr;HMMPfam_Pkinase_Tyr;WIF;HMMPfam_WIF	-	no_start_codon
PDCD6IP	10015	genome.wustl.edu	36	3	33869100	33869100	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	3	33869100	33869100	A	T	SNP	PDCD6IP	NM_013374	human	genbank	54_36p	1	reviewed	silent	c.1758	p.T586	1	NULL	-	-	no_errors
ALAS1	211	genome.wustl.edu	36	3	52215027	52215027	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	3	52215027	52215027	G	C	SNP	ALAS1	NM_000688	human	genbank	54_36p	1	validated	silent	c.933	p.S311	0.73	HMMPfam_Aminotran_1_2	HMMPfam_Aminotran_1_2;superfamily_PLP-dependent transferases	-	no_errors
SLC25A4	291	genome.wustl.edu	36	4	186303363	186303363	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	4	186303363	186303363	G	A	SNP	SLC25A4	NM_001151	human	genbank	54_36p	1	validated	missense	c.563	p.R188K	1	NULL	-	-	no_errors
MMRN1	22915	genome.wustl.edu	36	4	91035171	91035171	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	4	91035171	91035171	T	C	SNP	MMRN1	NM_007351	human	genbank	54_36p	1	reviewed	missense	c.26	p.L9P	0.57	NULL	-	-	no_errors
SEMA6A	57556	genome.wustl.edu	36	5	115868492	115868492	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	5	115868492	115868492	A	C	SNP	SEMA6A	NM_020796	human	genbank	54_36p	-1	validated	silent	c.48	p.A16	1	NULL	HMMPfam_Sema;superfamily_Sema domain;HMMPfam_PSI;superfamily_Plexin repeat	-	no_errors
TCOF1	6949	genome.wustl.edu	36	5	149751776	149751776	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	5	149751776	149751776	G	A	SNP	TCOF1	NM_001008656	human	genbank	54_36p	1	reviewed	missense	c.3247	p.G1083R		NULL	-	-	no_errors
ENSG00000204989	0	genome.wustl.edu	36	11	59016003	59016003	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	11	59016003	59016003	G	A	SNP	ENSG00000204989	ENST00000378245	human	ensembl	54_36p	1	known	missense	c.198	p.M66I	0.6	NULL	HMMPfam_7tm_1;superfamily_SSF81321	-	no_errors
HIVEP2	3097	genome.wustl.edu	36	6	143137099	143137099	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	6	143137099	143137099	C	T	SNP	HIVEP2	NM_006734	human	genbank	54_36p	-1	provisional	missense	c.470	p.S157N	0.98	NULL	-	-	no_errors
SLC13A1	6561	genome.wustl.edu	36	7	122596533	122596533	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	7	122596533	122596533	G	A	SNP	SLC13A1	NM_022444	human	genbank	54_36p	-1	validated	missense	c.458	p.A153V	1	NULL	-	-	no_errors
BZW2	28969	genome.wustl.edu	36	7	16701010	16701021	+	In_Frame_Del	DEL	TGTGGATCATTT	TGTGGATCATTT	-		Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	TGTGGATCATTT	TGTGGATCATTT	TGTGGATCATTT	-	TGTGGATCATTT	TGTGGATCATTT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	7	16701010	16701021	TGTGGATCATTT	-	DEL	BZW2	NM_014038	human	genbank	54_36p	1	provisional	in_frame_del	c.678_689	p.VDHF227in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000	NULL	-	(deletion:cds_exon[16700984,16701154])	no_errors
HOXA1	3198	genome.wustl.edu	36	7	27102010	27102010	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	7	27102010	27102010	C	G	SNP	HOXA1	NM_005522	human	genbank	54_36p	-1	reviewed	missense	c.47	p.S16T	1	NULL	HMMPfam_Homeobox;superfamily_Homeodomain-like	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113574057	113574057	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	8	113574057	113574057	G	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	silent	c.5115	p.G1705	0.9	HMMPfam_Sushi	HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;superfamily_Complement control module/SCR domain	-	no_errors
TMEM71	137835	genome.wustl.edu	36	8	133833240	133833240	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	8	133833240	133833240	C	G	SNP	TMEM71	NM_144649	human	genbank	54_36p	-1	validated	missense	c.287	p.S96T	1	NULL	-	-	no_errors
ZNF16	7564	genome.wustl.edu	36	8	146128673	146128673	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	8	146128673	146128673	G	A	SNP	ZNF16	NM_001029976	human	genbank	54_36p	-1	reviewed	nonsense	c.304	p.Q102*	0.02	NULL	-	-	no_errors
CEP110	11064	genome.wustl.edu	36	9	122971763	122971763	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	9	122971763	122971763	T	C	SNP	CEP110	NM_007018	human	genbank	54_36p	1	reviewed	silent	c.6124	p.L2042		NULL	HMMPfam_LRR_1;superfamily_Prefoldin;superfamily_tRNA-binding arm;superfamily_TPR-like;superfamily_L domain-like;superfamily_H-NS histone-like proteins	-	no_errors
RABGAP1	23637	genome.wustl.edu	36	9	124786770	124786770	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	9	124786770	124786770	A	C	SNP	RABGAP1	NM_012197	human	genbank	54_36p	1	validated	silent	c.120	p.V40	1	NULL	-	-	no_errors
KIAA0020	9933	genome.wustl.edu	36	9	2821319	2821319	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	9	2821319	2821319	C	G	SNP	KIAA0020	NM_014878	human	genbank	54_36p	-1	validated	missense	c.542	p.R181P	0.99	NULL	-	-	no_errors
UBAP2	55833	genome.wustl.edu	36	9	33976812	33976812	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	9	33976812	33976812	C	G	SNP	UBAP2	NM_018449	human	genbank	54_36p	-1	reviewed	missense	c.466	p.D156H	1	NULL	HMMPfam_UBA;superfamily_UBA-like	-	no_errors
SLC28A3	64078	genome.wustl.edu	36	9	86090263	86090263	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	9	86090263	86090263	G	A	SNP	SLC28A3	NM_022127	human	genbank	54_36p	-1	provisional	silent	c.1464	p.Y488	1	NULL	-	-	no_errors
GPR112	139378	genome.wustl.edu	36	X	135256374	135256374	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	X	135256374	135256374	G	A	SNP	GPR112	NM_153834	human	genbank	54_36p	1	validated	missense	c.2843	p.G948E		NULL	HMMPfam_GPS;HMMPfam_7tm_2;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Family A G protein-coupled receptor-like	-	no_errors
LOC728748	728748	genome.wustl.edu	36	X	73536032	73536032	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9cdb7821-fe43-46cd-94f3-b9d68b9ce21f	10ce2c8a-a622-4457-9b5e-e464b260270a	X	73536032	73536032	T	C	SNP	LOC728748	XR_037583	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene