Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error HSD3B1 3283 genome.wustl.edu 36 1 119858714 119858714 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 1 119858714 119858714 G T SNP HSD3B1 NM_000862 human genbank 54_36p 1 validated missense c.1045 p.A349S 1 NULL HMMPfam_3Beta_HSD;superfamily_NAD(P)-binding Rossmann-fold domains - no_errors PGLYRP3 114771 genome.wustl.edu 36 1 151549717 151549717 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 1 151549717 151549717 C T SNP PGLYRP3 NM_052891 human genbank 54_36p -1 provisional missense c.49 p.A17T 0.02 NULL - - no_errors INSRR 3645 genome.wustl.edu 36 1 155090326 155090326 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 1 155090326 155090326 G C SNP INSRR NM_014215 human genbank 54_36p -1 validated missense c.479 p.P160R 0.58 NULL Recep_L_domain;HMMPfam_Recep_L_domain;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;fn3;HMMPfam_fn3;Furin-like;HMMPfam_Furin-like - no_errors LOC148430 148430 genome.wustl.edu 36 1 159643193 159643193 + RNA SNP C C G novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C G C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 1 159643193 159643193 C G SNP LOC148430 XR_017209 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene SRGAP2 23380 genome.wustl.edu 36 1 204698858 204698858 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 1 204698858 204698858 C A SNP SRGAP2 ENST00000367123 human ensembl 54_36p 1 known missense c.728 p.A243E 0.997 NULL - - no_stop_codon LAMB3 3914 genome.wustl.edu 36 1 207857413 207857413 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 1 207857413 207857413 C A SNP LAMB3 NM_000228 human genbank 54_36p -1 reviewed nonsense c.3193 p.E1065* NULL HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Galactose-binding domain-like;superfamily_Cytochrome c;superfamily_Spectrin repeat;superfamily_EGF/Laminin - no_errors CAPN9 10753 genome.wustl.edu 36 1 228995244 228995244 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 1 228995244 228995244 A T SNP CAPN9 NM_006615 human genbank 54_36p 1 reviewed missense c.1817 p.D606V 1 NULL - - no_errors PLD5 200150 genome.wustl.edu 36 1 240343860 240343860 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 1 240343860 240343860 A C SNP PLD5 NM_152666 human genbank 54_36p -1 provisional missense c.749 p.I250S 1 NULL - - no_errors LOC646784 646784 genome.wustl.edu 36 1 91262861 91262861 + RNA SNP C C T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 1 91262861 91262861 C T SNP LOC646784 XR_017249 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene C10orf2 56652 genome.wustl.edu 36 10 102738267 102738267 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 10 102738267 102738267 A T SNP C10orf2 NM_021830 human genbank 54_36p 1 validated missense c.310 p.I104F 1 NULL - - no_errors PNLIPRP3 119548 genome.wustl.edu 36 10 118226224 118226224 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 10 118226224 118226224 A T SNP PNLIPRP3 NM_001011709 human genbank 54_36p 1 validated missense c.1243 p.S415C 0.74 NULL - - no_errors CRTAC1 55118 genome.wustl.edu 36 10 99645642 99645642 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 10 99645642 99645642 C A SNP CRTAC1 NM_018058 human genbank 54_36p -1 validated missense c.1307 p.R436L 0.996 NULL HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain - no_errors IGSF22 283284 genome.wustl.edu 36 11 18687509 18687509 + Splice_Site SNP C C T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 11 18687509 18687509 C T SNP IGSF22 NM_173588 human genbank 54_36p -1 validated splice_site c.2695+1 e16+1 1 - - - no_errors CKAP5 9793 genome.wustl.edu 36 11 46775067 46775067 + Splice_Site SNP C C T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 11 46775067 46775067 C T SNP CKAP5 NM_001008938 human genbank 54_36p -1 validated splice_site c.1339-1 e11-1 1 - - - no_errors PATL1 219988 genome.wustl.edu 36 11 59179634 59179634 + Silent SNP G G C Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 11 59179634 59179634 G C SNP PATL1 NM_152716 human genbank 54_36p -1 validated silent c.540 p.P180 0.908 NULL - - no_errors SUV420H1 51111 genome.wustl.edu 36 11 67682381 67682381 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 11 67682381 67682381 G T SNP SUV420H1 NM_017635 human genbank 54_36p -1 reviewed missense c.2008 p.P670T 0.71 NULL HMMPfam_SET;superfamily_SET domain - no_errors CCDC60 160777 genome.wustl.edu 36 12 118422311 118422311 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 12 118422311 118422311 C A SNP CCDC60 NM_178499 human genbank 54_36p 1 validated missense c.603 p.D201E 1 NULL - - no_errors TMEM132B 114795 genome.wustl.edu 36 12 124634364 124634364 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 12 124634364 124634364 G T SNP TMEM132B NM_052907 human genbank 54_36p 1 provisional missense c.1293 p.L431F 0.997 NULL - - no_errors CNTN1 1272 genome.wustl.edu 36 12 39705370 39705370 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 12 39705370 39705370 C A SNP CNTN1 NM_001843 human genbank 54_36p 1 reviewed missense c.2675 p.P892Q 1 HMMPfam_fn3 HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;HMMPfam_ig;superfamily_Immunoglobulin - no_errors MARS 4141 genome.wustl.edu 36 12 56194772 56194772 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 12 56194772 56194772 C T SNP MARS NM_004990 human genbank 54_36p 1 reviewed missense c.1970 p.A657V 1 HMMPfam_tRNA-synt_1g HMMPfam_WHEP-TRS;HMMPfam_GST_C;superfamily_S15/NS1 RNA-binding domain;superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;superfamily_Glutathione S-transferase (GST) C-terminal domain;superfamily_Thioredoxin-like;HMMPfam_tRNA-synt_1g;superfamily_Nucleotidylyl transferase;superfamily_Methionyl-tRNA synthetase (MetRS) Zn-domain - no_errors STARD13 90627 genome.wustl.edu 36 13 32614466 32614466 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 13 32614466 32614466 A T SNP STARD13 NM_178006 human genbank 54_36p -1 validated missense c.368 p.V123E 1 NULL HMMPfam_RhoGAP;HMMPfam_START;superfamily_GTPase activation domain GAP;HMMPfam_SAM_2;superfamily_Bet v1-like - no_errors TDRD9 122402 genome.wustl.edu 36 14 103552136 103552136 + Silent SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 14 103552136 103552136 G T SNP TDRD9 NM_153046 human genbank 54_36p 1 validated silent c.1434 p.A478 0.025 NULL - - no_errors CEBPE 1053 genome.wustl.edu 36 14 22658083 22658083 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 14 22658083 22658083 A T SNP CEBPE NM_001805 human genbank 54_36p -1 reviewed missense c.58 p.F20I 1 NULL HMMPfam_bZIP_2 - no_errors RTN1 6252 genome.wustl.edu 36 14 59282307 59282307 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 14 59282307 59282307 G T SNP RTN1 NM_021136 human genbank 54_36p -1 reviewed missense c.887 p.T296N 0.25 NULL Reticulon;HMMPfam_Reticulon - no_errors VSX2 338917 genome.wustl.edu 36 14 73781670 73781670 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 14 73781670 73781670 G A SNP VSX2 NM_182894 human genbank 54_36p 1 validated missense c.505 p.E169K 1 NULL HMMPfam_Homeobox;HMMPfam_OAR;superfamily_Homeodomain-like - no_errors VPS18 57617 genome.wustl.edu 36 15 38980364 38980364 + Missense_Mutation SNP G G A Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 15 38980364 38980364 G A SNP VPS18 NM_020857 human genbank 54_36p 1 reviewed missense c.2056 p.A686T 1 NULL - - no_errors GPR139 124274 genome.wustl.edu 36 16 19950734 19950734 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 16 19950734 19950734 C A SNP GPR139 NM_001002911 human genbank 54_36p -1 validated missense c.886 p.A296S 1 NULL - - no_errors GPR139 124274 genome.wustl.edu 36 16 19950854 19950854 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 16 19950854 19950854 G A SNP GPR139 NM_001002911 human genbank 54_36p -1 validated missense c.766 p.P256S 1 NULL - - no_errors FBRS 64319 genome.wustl.edu 36 16 30588225 30588225 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 16 30588225 30588225 G T SNP FBRS NM_001105079 human genbank 54_36p 1 validated missense c.1141 p.G381C 0.91 NULL - - no_errors ITGAX 3687 genome.wustl.edu 36 16 31282089 31282089 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 16 31282089 31282089 A C SNP ITGAX NM_000887 human genbank 54_36p 1 reviewed missense c.1603 p.K535Q 0.2 HMMPfam_FG-GAP HMMPfam_VWA;HMMPfam_Integrin_alpha;HMMPfam_FG-GAP;HMMPfam_Integrin_alpha2;superfamily_vWA-like;superfamily_Integrin domains;superfamily_Integrin alpha N-terminal domain - no_errors RBL2 5934 genome.wustl.edu 36 16 52081562 52081562 + Missense_Mutation SNP G G T Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 16 52081562 52081562 G T SNP RBL2 NM_005611 human genbank 54_36p 1 validated missense c.3269 p.S1090I 1 NULL RB_B,HMMPfam_RB_B,RB_A,HMMPfam_RB_A - no_errors HYDIN 54768 genome.wustl.edu 36 16 69660861 69660861 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 16 69660861 69660861 A T SNP HYDIN NM_032821 human genbank 54_36p -1 validated missense c.1784 p.I595N 1 NULL - - no_errors LOC284167 284167 genome.wustl.edu 36 17 57569069 57569069 + RNA SNP C C A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 17 57569069 57569069 C A SNP LOC284167 XR_017049 human genbank 54_36p -1 model rna NULL NULL 0.768 - - - pseudogene TNRC6C 57690 genome.wustl.edu 36 17 73558434 73558434 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 17 73558434 73558434 G T SNP TNRC6C NM_018996 human genbank 54_36p 1 validated missense c.1696 p.D566Y 1 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7519204 7519204 + Missense_Mutation SNP G G A rs28934874 Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 17 7519204 7519204 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.451 p.P151S 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors GALNT1 2589 genome.wustl.edu 36 18 31526181 31526181 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 18 31526181 31526181 G A SNP GALNT1 NM_020474 human genbank 54_36p 1 reviewed missense c.1198 p.V400I 0.78 NULL HMMPfam_Ricin_B_lectin;HMMPfam_Glycos_transf_2;superfamily_Ricin B-like lectins;superfamily_Nucleotide-diphospho-sugar transferases - no_errors SLC14A2 8170 genome.wustl.edu 36 18 41516374 41516374 + Silent SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 18 41516374 41516374 G A SNP SLC14A2 NM_007163 human genbank 54_36p 1 validated silent c.2655 p.P885 0.431 NULL HMMPfam_UT,superfamily_Multiheme cytochromes - no_errors OR10H5 284433 genome.wustl.edu 36 19 15765980 15765980 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 19 15765980 15765980 G A SNP OR10H5 NM_001004466 human genbank 54_36p 1 provisional missense c.122 p.G41D 0.01 NULL - - no_errors DDA1 79016 genome.wustl.edu 36 19 17286170 17286170 + Silent SNP G G T Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 19 17286170 17286170 G T SNP DDA1 NM_024050 human genbank 54_36p 1 validated silent c.108 p.L36 1 NULL - - no_errors ZNF222 7673 genome.wustl.edu 36 19 49227919 49227919 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 19 49227919 49227919 A C SNP ZNF222 NM_013360 human genbank 54_36p 1 validated missense c.252 p.Q84H NULL HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers - no_errors ZNF649 65251 genome.wustl.edu 36 19 57092003 57092003 + Nonsense_Mutation SNP C C T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 19 57092003 57092003 C T SNP ZNF649 NM_023074 human genbank 54_36p -1 provisional nonsense c.56 p.W19* 0.97 NULL - - no_errors ZNF813 126017 genome.wustl.edu 36 19 58686814 58686814 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 19 58686814 58686814 C T SNP ZNF813 NM_001004301 human genbank 54_36p 1 validated missense c.1516 p.R506W NULL - - no_errors LILRA2 11027 genome.wustl.edu 36 19 59778192 59778192 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 19 59778192 59778192 A G SNP LILRA2 NM_006866 human genbank 54_36p 1 validated missense c.535 p.I179V NULL - - no_errors NLRP8 126205 genome.wustl.edu 36 19 61169559 61169559 + Splice_Site SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 19 61169559 61169559 G T SNP NLRP8 NM_176811 human genbank 54_36p 1 provisional splice_site c.2381+1 e5+1 0.02 - - - no_errors ZC3H6 376940 genome.wustl.edu 36 2 112805053 112805053 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 2 112805053 112805053 A G SNP ZC3H6 NM_198581 human genbank 54_36p 1 validated missense c.2087 p.D696G 1 NULL - - no_errors PKP4 8502 genome.wustl.edu 36 2 159186089 159186089 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 2 159186089 159186089 G C SNP PKP4 NM_003628 human genbank 54_36p 1 reviewed missense c.513 p.K171N 1 NULL - - no_errors ASNSD1 54529 genome.wustl.edu 36 2 190240088 190240088 + Missense_Mutation SNP G G T Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 2 190240088 190240088 G T SNP ASNSD1 NM_019048 human genbank 54_36p 1 validated missense c.985 p.G329C 1 NULL - - no_errors GGCX 2677 genome.wustl.edu 36 2 85639141 85639154 + Frame_Shift_Del DEL TCCATGATGTCTTG TCCATGATGTCTTG - novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 TCCATGATGTCTTG TCCATGATGTCTTG TCCATGATGTCTTG - TCCATGATGTCTTG TCCATGATGTCTTG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 2 85639141 85639154 TCCATGATGTCTTG - DEL GGCX NM_000821 human genbank 54_36p -1 reviewed frame_shift_del c.472_459 p.D153fs 1.000:1.000:1.000:1.000:0.987:0.998:0.984:0.965:1.000:1.000:1.000:1.000:1.000:1.000 HMMPfam_VKG_Carbox HMMPfam_VKG_Carbox;superfamily_RmlC-like cupins (deletion:cds_exon[85639074;85639239]) no_errors ZSWIM3 140831 genome.wustl.edu 36 20 43938876 43938876 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 20 43938876 43938876 T A SNP ZSWIM3 NM_080752 human genbank 54_36p 1 validated missense c.272 p.L91Q 0.99 NULL - - no_errors NCOA3 8202 genome.wustl.edu 36 20 45696310 45696310 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 20 45696310 45696310 A T SNP NCOA3 NM_181659 human genbank 54_36p 1 reviewed missense c.1076 p.D359V 1 NULL HMMPfam_HLH;superfamily_Nuclear receptor coactivator interlocking domain;HMMPfam_DUF1518;superfamily_HLH helix-loop-helix DNA-binding domain;HMMPfam_PAS;HMMPfam_Nuc_rec_co-act;HMMPfam_SRC-1;superfamily_PYP-like sensor domain (PAS domain) - no_errors RIPK4 54101 genome.wustl.edu 36 21 42034499 42034499 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 21 42034499 42034499 C T SNP RIPK4 ENST00000330470 human ensembl 54_36p -1 known missense c.1132 p.A378T 1 NULL - - no_errors MYO18B 84700 genome.wustl.edu 36 22 24718430 24718430 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 22 24718430 24718430 A C SNP MYO18B NM_032608 human genbank 54_36p 1 reviewed missense c.6258 p.E2086D 1 NULL HMMPfam_Myosin_head;superfamily_tRNA-binding arm;superfamily_P-loop containing nucleoside triphosphate hydrolases;HMMPfam_IQ - no_errors LOC730005 730005 genome.wustl.edu 36 22 29251840 29251840 + Silent SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 22 29251840 29251840 G A SNP LOC730005 XM_001132040 human genbank 54_36p -1 model silent c.744 p.P248 0.92 NULL - - no_errors CRBN 51185 genome.wustl.edu 36 3 3190765 3190765 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 3 3190765 3190765 T C SNP CRBN NM_016302 human genbank 54_36p -1 validated missense c.355 p.T119A 1 NULL - - no_errors CDCP1 64866 genome.wustl.edu 36 3 45102499 45102499 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 3 45102499 45102499 G C SNP CDCP1 NM_022842 human genbank 54_36p -1 reviewed missense c.2146 p.P716A 0.982 NULL superfamily_Spermadhesin CUB domain - no_errors C3orf63 23272 genome.wustl.edu 36 3 56650737 56650737 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 3 56650737 56650737 C G SNP C3orf63 NM_015224 human genbank 54_36p -1 validated missense c.1111 p.D371H 1 NULL - - no_errors FGF2 2247 genome.wustl.edu 36 4 124032998 124032998 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 4 124032998 124032998 C G SNP FGF2 NM_002006 human genbank 54_36p 1 reviewed missense c.864 p.S288R 1 NULL HMMPfam_FGF;superfamily_Cytokine - no_errors CORIN 10699 genome.wustl.edu 36 4 47361995 47361995 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 4 47361995 47361995 G C SNP CORIN NM_006587 human genbank 54_36p -1 reviewed missense c.1400 p.P467R 1 NULL - - no_errors ANKHD1-EIF4EBP3 404734 genome.wustl.edu 36 5 139883903 139883903 + Silent SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 5 139883903 139883903 G A SNP ANKHD1-EIF4EBP3 NM_020690 human genbank 54_36p 1 reviewed silent c.4386 p.K1462 1 NULL - - no_errors TRIM23 373 genome.wustl.edu 36 5 64928098 64928098 + Silent SNP A A G Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 5 64928098 64928098 A G SNP TRIM23 NM_001656 human genbank 54_36p -1 reviewed silent c.1326 p.T442 0.997 HMMPfam_Arf superfamily_RING/U-box,HMMPfam_zf-B_box,HMMPfam_zf-C3HC4,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_C2H2 and C2HC zinc fingers - no_errors VNN1 8876 genome.wustl.edu 36 6 133046057 133046057 + Nonsense_Mutation SNP G G C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 6 133046057 133046057 G C SNP VNN1 NM_004666 human genbank 54_36p -1 reviewed nonsense c.1457 p.S486* NULL HMMPfam_CN_hydrolase;superfamily_Carbon-nitrogen hydrolase - no_errors SLC35D3 340146 genome.wustl.edu 36 6 137287256 137287256 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 6 137287256 137287256 G C SNP SLC35D3 NM_001008783 human genbank 54_36p 1 provisional missense c.980 p.G327A 1 NULL - - no_errors SYNGAP1 8831 genome.wustl.edu 36 6 33513723 33513723 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 6 33513723 33513723 G A SNP SYNGAP1 NM_006772 human genbank 54_36p 1 validated missense c.1018 p.G340R 1 NULL HMMPfam_C2;HMMPfam_PH;HMMPfam_RasGAP;superfamily_GTPase activation domain GAP;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_PH domain-like - no_errors LOC727842 727842 genome.wustl.edu 36 6 58554097 58554097 + RNA SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 6 58554097 58554097 G T SNP LOC727842 XR_015140 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene ME1 4199 genome.wustl.edu 36 6 83983022 83983022 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 6 83983022 83983022 G T SNP ME1 NM_002395 human genbank 54_36p -1 reviewed missense c.1462 p.Q488K 0.99 HMMPfam_Malic_M HMMPfam_malic;HMMPfam_Malic_M;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_Aminoacid dehydrogenase-like N-terminal domain - no_errors TRRAP 8295 genome.wustl.edu 36 7 98430214 98430214 + Silent SNP G G T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 7 98430214 98430214 G T SNP TRRAP NM_003496 human genbank 54_36p 1 validated silent c.9987 p.V3329 1 NULL HMMPfam_PI3_PI4_kinase;HMMPfam_FAT;superfamily_Protein kinase-like (PK-like);superfamily_ARM repeat;superfamily_Protein prenylyltransferase;superfamily_TPR-like;superfamily_TolA/TonB C-terminal domain - no_errors ZKSCAN1 7586 genome.wustl.edu 36 7 99459864 99459864 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 7 99459864 99459864 G A SNP ZKSCAN1 NM_003439 human genbank 54_36p 1 validated missense c.578 p.R193Q 0.55 NULL - - no_errors GSR 2936 genome.wustl.edu 36 8 30686962 30686962 + Splice_Site DEL C - C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C - C C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 8 30686962 30686962 C - DEL GSR NM_000637 human genbank 54_36p -1 validated splice_site_del c.NULL e3-1 1.000:0.997 - - (deletion:intron[30686962;30689120]) no_errors PENK 5179 genome.wustl.edu 36 8 57516543 57516543 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 8 57516543 57516543 T C SNP PENK NM_006211 human genbank 54_36p -1 validated missense c.646 p.R216G 1 NULL HMMPfam_Opiods_neuropep - no_errors MELK 9833 genome.wustl.edu 36 9 36661029 36661029 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 9 36661029 36661029 C T SNP MELK NM_014791 human genbank 54_36p 1 provisional missense c.1540 p.H514Y 1 NULL HMMPfam_Pkinase;HMMPfam_KA1;superfamily_Protein kinase-like (PK-like);superfamily_Kinase associated domain 1 KA1 - no_errors SLC25A5 292 genome.wustl.edu 36 X 118488012 118488012 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a X 118488012 118488012 G A SNP SLC25A5 NM_001152 human genbank 54_36p 1 validated missense c.472 p.G158S 1 HMMPfam_Mito_carr HMMPfam_Mito_carr,superfamily_Mitochondrial carrier - no_errors HCFC1 3054 genome.wustl.edu 36 X 152876088 152876088 + Missense_Mutation SNP T T C Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 T T T C T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a X 152876088 152876088 T C SNP HCFC1 NM_005334 human genbank 54_36p -1 reviewed missense c.2224 p.S742G 1 NULL - - no_errors PELI1 57162 genome.wustl.edu 36 2 64175553 64175554 + Missense_Mutation DNP TC TC AT novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 TC TC TC AT TC TC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 2 64175553 64175554 TC AT DNP PELI1 NM_020651 human genbank 54_36p -1 validated missense c.1044_1043 p.G348D 1.000:1.000 HMMPfam_Pellino HMMPfam_Pellino - no_errors THBS1 7057 genome.wustl.edu 36 15 37662126 37662127 + Missense_Mutation DNP GA GA TT novel Unknown TCGA-23-1118-01A-01W-0488-09 TCGA-23-1118-10A-01W-0488-09 GA GA GA TT GA GA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 00c41845-6b48-40fa-82e9-1b436e7d91c3 4c9bc38a-51ca-49dc-9120-68e7c490c62a 15 37662126 37662127 GA TT DNP THBS1 NM_003246 human genbank 54_36p 1 reviewed missense c.508_509 p.D170F 1.000:1.000 HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_TSP type-3 repeat,HMMPfam_TSP_3,HMMPfam_TSP_C - no_errors