Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
TARDBP	23435	genome.wustl.edu	36	1	11001432	11001432	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	11001432	11001432	C	T	SNP	TARDBP	NM_007375	human	genbank	54_36p	1	reviewed	missense	c.458	p.T153M	1	NULL	-	-	no_errors
KCNA10	3744	genome.wustl.edu	36	1	110862818	110862818	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	110862818	110862818	C	G	SNP	KCNA10	NM_005549	human	genbank	54_36p	-1	reviewed	missense	c.115	p.G39R	0.22	NULL	-	-	no_errors
KCNA3	3738	genome.wustl.edu	36	1	111018078	111018078	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	111018078	111018078	C	T	SNP	KCNA3	NM_002232	human	genbank	54_36p	-1	reviewed	missense	c.877	p.D293N	1	NULL	-	-	no_errors
PRAMEF20	645425	genome.wustl.edu	36	1	13615538	13615538	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	13615538	13615538	G	C	SNP	PRAMEF20	NM_001099852	human	genbank	54_36p	1	provisional	missense	c.140	p.R47T	0.003	NULL	-	-	no_errors
TMOD4	29765	genome.wustl.edu	36	1	149410549	149410549	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	149410549	149410549	C	A	SNP	TMOD4	NM_013353	human	genbank	54_36p	-1	validated	missense	c.710	p.G237V	1	NULL	-	-	no_errors
SLAMF9	89886	genome.wustl.edu	36	1	158188870	158188870	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	158188870	158188870	G	T	SNP	SLAMF9	NM_033438	human	genbank	54_36p	-1	provisional	missense	c.470	p.S157Y	0.02	NULL	-	-	no_errors
RNASEL	6041	genome.wustl.edu	36	1	180821901	180821901	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	180821901	180821901	T	A	SNP	RNASEL	NM_021133	human	genbank	54_36p	-1	reviewed	missense	c.664	p.T222S		NULL	-	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184402616	184402616	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	184402616	184402616	G	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.15493	p.D5165Y	1	NULL	-	-	no_errors
C4BPB	725	genome.wustl.edu	36	1	205336565	205336565	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	205336565	205336565	G	T	SNP	C4BPB	NM_000716	human	genbank	54_36p	1	reviewed	missense	c.485	p.S162I	0.06	NULL	-	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214487150	214487150	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	214487150	214487150	G	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	nonsense	c.2209	p.R737*	0.83	NULL	-	-	no_errors
ZNF496	84838	genome.wustl.edu	36	1	245531178	245531178	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	245531178	245531178	C	G	SNP	ZNF496	NM_032752	human	genbank	54_36p	-1	provisional	missense	c.1030	p.E344Q		NULL	-	-	no_errors
YTHDF2	51441	genome.wustl.edu	36	1	28942432	28942432	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	28942432	28942432	C	T	SNP	YTHDF2	NM_016258	human	genbank	54_36p	1	validated	missense	c.1063	p.R355W	1	NULL	-	-	no_errors
ZSCAN20	7579	genome.wustl.edu	36	1	33717802	33717802	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	33717802	33717802	C	A	SNP	ZSCAN20	NM_145238	human	genbank	54_36p	1	validated	missense	c.326	p.T109N	0.99	NULL	-	-	no_errors
ZNF691	51058	genome.wustl.edu	36	1	43089259	43089259	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	43089259	43089259	G	A	SNP	ZNF691	NM_015911	human	genbank	54_36p	1	provisional	missense	c.43	p.E15K	1	NULL	-	-	no_errors
C10orf68	79741	genome.wustl.edu	36	10	33040622	33040622	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	10	33040622	33040622	C	T	SNP	C10orf68	NM_024688	human	genbank	54_36p	1	validated	nonsense	c.448	p.Q150*	0.007	NULL	-	-	no_errors
C10orf54	64115	genome.wustl.edu	36	10	73190679	73190679	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	10	73190679	73190679	C	G	SNP	C10orf54	NM_022153	human	genbank	54_36p	-1	validated	missense	c.520	p.A174P	0.01	NULL	HMMPfam_V-set;superfamily_Immunoglobulin	-	no_errors
LCOR	84458	genome.wustl.edu	36	10	98705139	98705139	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	10	98705139	98705139	G	C	SNP	LCOR	NM_032440	human	genbank	54_36p	1	provisional	missense	c.772	p.V258L	1	NULL	-	-	no_errors
MRVI1	10335	genome.wustl.edu	36	11	10607749	10607749	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	11	10607749	10607749	C	T	SNP	MRVI1	NM_001098579	human	genbank	54_36p	-1	reviewed	silent	c.459	p.A153	1	NULL	-	-	no_errors
BACE1	23621	genome.wustl.edu	36	11	116666422	116666422	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	11	116666422	116666422	G	C	SNP	BACE1	NM_012104	human	genbank	54_36p	-1	reviewed	missense	c.1256	p.A419G	1	NULL	HMMPfam_Asp;superfamily_Acid proteases	-	no_errors
OR6X1	390260	genome.wustl.edu	36	11	123130200	123130200	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	11	123130200	123130200	C	T	SNP	OR6X1	NM_001005188	human	genbank	54_36p	-1	provisional	silent	c.237	p.L79	0.22	NULL	-	-	no_errors
OR51T1	401665	genome.wustl.edu	36	11	4860452	4860452	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	11	4860452	4860452	A	C	SNP	OR51T1	NM_001004759	human	genbank	54_36p	1	provisional	silent	c.828	p.A276	0.24	NULL	-	-	no_errors
OR5M1	390168	genome.wustl.edu	36	11	56136973	56136973	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	11	56136973	56136973	G	C	SNP	OR5M1	NM_001004740	human	genbank	54_36p	-1	provisional	silent	c.582	p.V194	0.01	NULL	-	-	no_errors
MS4A2	2206	genome.wustl.edu	36	11	59619683	59619683	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	11	59619683	59619683	T	C	SNP	MS4A2	NM_000139	human	genbank	54_36p	1	reviewed	missense	c.713	p.M238T		NULL	-	-	no_errors
SYT9	143425	genome.wustl.edu	36	11	7398412	7398412	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	11	7398412	7398412	G	A	SNP	SYT9	NM_175733	human	genbank	54_36p	1	provisional	silent	c.1437	p.K479	1	NULL	-	-	no_errors
TMEM119	338773	genome.wustl.edu	36	12	107509713	107509713	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	12	107509713	107509713	G	A	SNP	TMEM119	NM_181724	human	genbank	54_36p	-1	validated	silent	c.576	p.G192	0.01	NULL	-	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128750475	128750475	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	12	128750475	128750475	G	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	silent	c.801	p.I267	0.994	NULL	-	-	no_errors
PLEKHA5	54477	genome.wustl.edu	36	12	19410169	19410169	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	12	19410169	19410169	C	G	SNP	PLEKHA5	NM_019012	human	genbank	54_36p	1	validated	missense	c.3115	p.Q1039E	0.11	NULL	-	-	no_errors
DGKA	1606	genome.wustl.edu	36	12	54620698	54620698	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	12	54620698	54620698	G	A	SNP	DGKA	NM_001345	human	genbank	54_36p	1	reviewed	silent	c.942	p.A314	0.21	HMMPfam_C1_1	HMMPfam_DAGK_acc;HMMPfam_DAGK_cat;HMMPfam_efhand;HMMPfam_C1_1;superfamily_EF-hand;superfamily_Cysteine-rich domain	-	no_errors
VWF	7450	genome.wustl.edu	36	12	6037406	6037406	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	12	6037406	6037406	G	A	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	silent	c.1599	p.D533	1	HMMPfam_VWD	HMMPfam_VWC;HMMPfam_VWD;HMMPfam_VWA;HMMPfam_TIL;superfamily_Serine proterase inhibitors;HMMPfam_DUF1787;superfamily_vWA-like;superfamily_EGF/Laminin;superfamily_PMP inhibitors;superfamily_Cystine-knot cytokines	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	864283	864283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	12	864283	864283	C	T	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	missense	c.4052	p.A1351V	0.07	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
N4BP2L2	10443	genome.wustl.edu	36	13	31914881	31914893	+	Frame_Shift_Del	DEL	AAAGAAGGAATAT	AAAGAAGGAATAT	-	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	AAAGAAGGAATAT	AAAGAAGGAATAT	AAAGAAGGAATAT	-	AAAGAAGGAATAT	AAAGAAGGAATAT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	13	31914881	31914893	AAAGAAGGAATAT	-	DEL	N4BP2L2	NM_033111	human	genbank	54_36p	-1	validated	frame_shift_del	c.1793_1781	p.Y594fs	0.710:0.923:0.954:0.983:0.982:0.982:0.976:0.947:0.842:0.518:0.003:0.004:0.002	NULL	-	(deletion:cds_exon[31914525;31916263])	no_errors
LOC647288	647288	genome.wustl.edu	36	13	74711645	74711645	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	13	74711645	74711645	A	T	SNP	LOC647288	XR_017516	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.87	-	-	-	pseudogene
SCEL	8796	genome.wustl.edu	36	13	77065663	77065663	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	13	77065663	77065663	G	C	SNP	SCEL	NM_144777	human	genbank	54_36p	1	reviewed	missense	c.706	p.D236H	0.01	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
ENSG00000214100	0	genome.wustl.edu	36	2	130399744	130399744	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	130399744	130399744	C	T	SNP	ENSG00000214100	ENST00000397540	human	ensembl	54_36p	-1	novel	missense	c.14	p.C5Y	0.27	NULL	-	-	no_errors
EAPP	55837	genome.wustl.edu	36	14	34068321	34068321	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	14	34068321	34068321	C	G	SNP	EAPP	NM_018453	human	genbank	54_36p	-1	reviewed	missense	c.464	p.R155T	1	NULL	-	-	no_errors
SOS2	6655	genome.wustl.edu	36	14	49655211	49655211	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	14	49655211	49655211	C	A	SNP	SOS2	NM_006939	human	genbank	54_36p	-1	validated	silent	c.3600	p.L1200	1	NULL	HMMPfam_RhoGEF;HMMPfam_RasGEF_N;HMMPfam_PH;HMMPfam_RasGEF;HMMPfam_Histone;superfamily_Ras GEF;superfamily_Histone-fold;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like	-	no_errors
FBXO34	55030	genome.wustl.edu	36	14	54888821	54888821	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	14	54888821	54888821	T	A	SNP	FBXO34	NM_017943	human	genbank	54_36p	1	validated	missense	c.1960	p.Y654N	1	NULL	HMMPfam_F-box;superfamily_F-box domain	-	no_errors
SPG11	80208	genome.wustl.edu	36	15	42740027	42740027	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	15	42740027	42740027	G	A	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	silent	c.337	p.L113	0.99	NULL	-	-	no_errors
SPATA5L1	79029	genome.wustl.edu	36	15	43500622	43500622	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	15	43500622	43500622	G	A	SNP	SPATA5L1	NM_024063	human	genbank	54_36p	1	provisional	silent	c.2184	p.P728	0.99	NULL	-	-	no_errors
LOC645693	645693	genome.wustl.edu	36	15	51017784	51017784	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	15	51017784	51017784	G	T	SNP	LOC645693	XR_017498	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CCDC33	80125	genome.wustl.edu	36	15	72410091	72410091	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	15	72410091	72410091	G	A	SNP	CCDC33	NM_025055	human	genbank	54_36p	1	validated	silent	c.1491	p.L497	0.57	NULL	-	-	no_errors
RASGRF1	5923	genome.wustl.edu	36	15	77126261	77126261	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	15	77126261	77126261	C	G	SNP	RASGRF1	NM_002891	human	genbank	54_36p	-1	reviewed	missense	c.760	p.E254Q	1	HMMPfam_RhoGEF	HMMPfam_IQ;HMMPfam_RhoGEF;HMMPfam_RasGEF_N;HMMPfam_PH;HMMPfam_RasGEF;superfamily_Ras GEF;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like	-	no_errors
ACAN	176	genome.wustl.edu	36	15	87183079	87183079	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	15	87183079	87183079	A	G	SNP	ACAN	NM_013227	human	genbank	54_36p	1	reviewed	silent	c.252	p.V84	1	HMMPfam_V-set	HMMPfam_Sushi;HMMPfam_Xlink;HMMPfam_Lectin_C;HMMPfam_EGF;HMMPfam_V-set;superfamily_Immunoglobulin;superfamily_C-type lectin-like;superfamily_EGF/Laminin;superfamily_Complement control module/SCR domain	-	no_errors
ANPEP	290	genome.wustl.edu	36	15	88150390	88150390	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	15	88150390	88150390	T	C	SNP	ANPEP	NM_001150	human	genbank	54_36p	-1	reviewed	silent	c.429	p.G143	0	HMMPfam_Peptidase_M1	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_Leukotriene A4 hydrolase N-terminal domain"	-	no_errors
CDH8	1006	genome.wustl.edu	36	16	60408994	60408994	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	16	60408994	60408994	C	A	SNP	CDH8	NM_001796	human	genbank	54_36p	-1	reviewed	silent	c.1167	p.P389	0.27	NULL	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
TUBB3	10381	genome.wustl.edu	36	16	88527421	88527421	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	16	88527421	88527421	G	A	SNP	TUBB3	NM_006086	human	genbank	54_36p	1	validated	missense	c.211	p.G71R	1	NULL	-	-	no_errors
FBXW10	10517	genome.wustl.edu	36	17	18595091	18595091	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	17	18595091	18595091	G	C	SNP	FBXW10	NM_031456	human	genbank	54_36p	1	validated	missense	c.1122	p.K374N	1	NULL	-	-	no_errors
CDC6	990	genome.wustl.edu	36	17	35700993	35700993	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	17	35700993	35700993	A	C	SNP	CDC6	NM_001254	human	genbank	54_36p	1	reviewed	silent	c.336	p.L112	0.01	NULL	"HMMPfam_AAA;HMMPfam_Cdc6_C;superfamily_""Winged helix"" DNA-binding domain;superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CDC6	990	genome.wustl.edu	36	17	35710691	35710691	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	17	35710691	35710691	G	T	SNP	CDC6	NM_001254	human	genbank	54_36p	1	reviewed	missense	c.1335	p.R445S	1	NULL	"HMMPfam_AAA;HMMPfam_Cdc6_C;superfamily_""Winged helix"" DNA-binding domain;superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
AOC3	8639	genome.wustl.edu	36	17	38258187	38258187	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	17	38258187	38258187	A	T	SNP	AOC3	NM_003734	human	genbank	54_36p	1	reviewed	missense	c.1301	p.Q434L	1	HMMPfam_Cu_amine_oxid	HMMPfam_Cu_amine_oxid;superfamily_Amine oxidase catalytic domain;HMMPfam_Cu_amine_oxidN2;HMMPfam_Cu_amine_oxidN3;superfamily_Amine oxidase N-terminal region	-	no_errors
SDK2	54549	genome.wustl.edu	36	17	68876216	68876216	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	17	68876216	68876216	C	A	SNP	SDK2	ENST00000334543	human	ensembl	54_36p	-1	known	missense	c.4129	p.V1377F	1	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519195	7519225	+	Frame_Shift_Del	DEL	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	-	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	-	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	17	7519195	7519225	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.460_430	p.Q144fs	0.496:0.001:0.001:0.001:0.001:0.996:0.998:0.906:0.998:0.997:0.001:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.014:0.987:0.994:0.947:0.886:0.843:0.860:0.979:0.970:0.987:0.998:1.000	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	(deletion:cds_exon[7519096;7519279])	no_errors
ARHGEF15	22899	genome.wustl.edu	36	17	8156242	8156242	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	17	8156242	8156242	C	G	SNP	ARHGEF15	NM_173728	human	genbank	54_36p	1	reviewed	missense	c.160	p.P54A		NULL	HMMPfam_RhoGEF;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like	-	no_errors
DSG3	1830	genome.wustl.edu	36	18	27309842	27309842	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	18	27309842	27309842	C	A	SNP	DSG3	NM_001944	human	genbank	54_36p	1	reviewed	missense	c.2621	p.S874Y		NULL	HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
TCF4	6925	genome.wustl.edu	36	18	51046486	51046486	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	18	51046486	51046486	C	A	SNP	TCF4	NM_001083962	human	genbank	54_36p	-1	reviewed	nonsense	c.1984	p.G662*	1	NULL	-	-	no_errors
SERPINB11	89778	genome.wustl.edu	36	18	59541552	59541552	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	18	59541552	59541552	T	A	SNP	SERPINB11	ENST00000382749	human	ensembl	54_36p	1	known	missense	c.512	p.F171Y	1	NULL	HMMPfam_Serpin,superfamily_Serpins	-	no_errors
ZNF461	92283	genome.wustl.edu	36	19	41821987	41821987	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	19	41821987	41821987	C	A	SNP	ZNF461	NM_153257	human	genbank	54_36p	-1	validated	missense	c.1100	p.R367M		HMMPfam_zf-C2H2	HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SIPA1L3	23094	genome.wustl.edu	36	19	43302101	43302101	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	19	43302101	43302101	G	A	SNP	SIPA1L3	NM_015073	human	genbank	54_36p	1	validated	silent	c.2607	p.G869	0.99	NULL	HMMPfam_Rap_GAP;HMMPfam_PDZ;superfamily_PDZ domain-like;superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
RYR1	6261	genome.wustl.edu	36	19	43616323	43616323	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	19	43616323	43616323	A	T	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.14	p.E5V	1	NULL	HMMPfam_RYDR_ITPR;HMMPfam_RyR;HMMPfam_MIR;HMMPfam_SPRY;HMMPfam_Ion_trans;HMMPfam_RR_TM4-6;HMMPfam_RIH_assoc;HMMPfam_Ins145_P3_rec;superfamily_EF-hand;superfamily_MIR domain (Pfam 02815)	-	no_errors
IZUMO1	284359	genome.wustl.edu	36	19	53936883	53936883	+	Silent	SNP	G	G	C		Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	19	53936883	53936883	G	C	SNP	IZUMO1	NM_182575	human	genbank	54_36p	-1	validated	silent	c.729	p.A243	0.547	NULL	-	-	no_errors
MARCH2	51257	genome.wustl.edu	36	19	8397561	8397561	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	19	8397561	8397561	G	C	SNP	MARCH2	NM_001005415	human	genbank	54_36p	1	validated	missense	c.245	p.C82S	1	NULL	-	-	no_errors
GLI2	2736	genome.wustl.edu	36	2	121464516	121464516	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	121464516	121464516	G	A	SNP	GLI2	NM_005270	human	genbank	54_36p	1	reviewed	missense	c.4556	p.G1519D	1	NULL	HMMPfam_zf-C2H2;superfamily_Kazal-type serine protease inhibitors;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PRPF40A	55660	genome.wustl.edu	36	2	153280796	153280796	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	153280796	153280796	G	C	SNP	PRPF40A	NM_017892	human	genbank	54_36p	-1	validated	missense	c.175	p.P59A	1	NULL	-	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169742768	169742768	+	Missense_Mutation	SNP	T	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	C	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	169742768	169742768	T	C	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.10184	p.E3395G	1	HMMPfam_Ldl_recept_b	HMMPfam_Ldl_recept_b;HMMPfam_Ldl_recept_a;HMMPfam_EGF;superfamily_Growth factor receptor domain;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_LDL receptor-like module;superfamily_YWTD domain	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179350261	179350261	+	Missense_Mutation	SNP	A	A	C		Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	179350261	179350261	A	C	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	missense	c.4674	p.F1558L	1	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
UBE2E3	10477	genome.wustl.edu	36	2	181555080	181555080	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	181555080	181555080	G	T	SNP	UBE2E3	NM_006357	human	genbank	54_36p	1	reviewed	silent	c.66	p.A22	0.66	NULL	HMMPfam_UQ_con;superfamily_UBC-like	-	no_errors
PIKFYVE	200576	genome.wustl.edu	36	2	208909874	208909874	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	208909874	208909874	C	G	SNP	PIP5K3	NM_015040	human	genbank	54_36p	1	validated	missense	c.4588	p.L1530V	1	NULL	"HMMPfam_FYVE;HMMPfam_DEP;HMMPfam_Cpn60_TCP1;HMMPfam_PIP5K;superfamily_FYVE/PHD zinc finger;superfamily_""Winged helix"" DNA-binding domain;superfamily_Spectrin repeat;superfamily_GroEL apical domain-like;superfamily_GroEL-intermediate domain like;superfamily_SAICAR synthase-like"	-	no_errors
AAMP	14	genome.wustl.edu	36	2	218839034	218839034	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	218839034	218839034	T	A	SNP	AAMP	NM_001087	human	genbank	54_36p	-1	reviewed	nonsense	c.760	p.K254*	0.99	NULL	-	-	no_errors
COL4A4	1286	genome.wustl.edu	36	2	227633177	227633177	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	227633177	227633177	C	A	SNP	COL4A4	NM_000092	human	genbank	54_36p	-1	reviewed	missense	c.2083	p.G695C	0.38	HMMPfam_Collagen	HMMPfam_Collagen;superfamily_C-type lectin-like;HMMPfam_C4	-	no_errors
EML4	27436	genome.wustl.edu	36	2	42375786	42375786	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	42375786	42375786	T	A	SNP	EML4	NM_019063	human	genbank	54_36p	1	validated	silent	c.1236	p.V412	0.99	NULL	HMMPfam_WD40;HMMPfam_HELP;superfamily_WD40 repeat-like	-	no_errors
MSH2	4436	genome.wustl.edu	36	2	47510535	47510535	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	47510535	47510535	G	A	SNP	MSH2	NM_000251	human	genbank	54_36p	1	reviewed	silent	c.1227	p.Q409	1	HMMPfam_MutS_III	HMMPfam_MutS_I;MutS_III;HMMPfam_MutS_III;MutS_II;HMMPfam_MutS_II;MutS_IV;HMMPfam_MutS_IV;DNA repair protein MutS domain III;superfamily_DNA repair protein MutS domain III;P-loop containing nucleoside triphosphate hydrolases;superfamily_P-loop containing nucleoside triphosphate hydrolases;DNA repair protein MutS domain II;superfamily_DNA repair protein MutS domain II;MutS_V;HMMPfam_MutS_V;MutS_I	-	no_errors
RTN4	57142	genome.wustl.edu	36	2	55068340	55068340	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	2	55068340	55068340	T	C	SNP	RTN4	NM_020532	human	genbank	54_36p	-1	reviewed	splice_site	c.3014-2	e4-2	1	-	-	-	no_errors
RPN2	6185	genome.wustl.edu	36	20	35295860	35295860	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	20	35295860	35295860	C	T	SNP	RPN2	NM_002951	human	genbank	54_36p	1	reviewed	silent	c.1701	p.V567	1	HMMPfam_Ribophorin_II	HMMPfam_Ribophorin_II	-	no_errors
GABPA	2551	genome.wustl.edu	36	21	26043285	26043285	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	21	26043285	26043285	A	C	SNP	GABPA	NM_002040	human	genbank	54_36p	1	validated	missense	c.290	p.Q97P	1	NULL	-	-	no_errors
ETS2	2114	genome.wustl.edu	36	21	39113551	39113551	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	21	39113551	39113551	G	T	SNP	ETS2	NM_005239	human	genbank	54_36p	1	validated	missense	c.1066	p.G356C	1	NULL	"HMMPfam_Ets;HMMPfam_SAM_PNT;superfamily_SAM/Pointed domain;superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
SNORA36B	677818	genome.wustl.edu	36	1	218440622	218440622	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	1	218440622	218440622	C	G	SNP	SNORA36B	NR_002994	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	no_errors
PI4KAP1	728233	genome.wustl.edu	36	22	18765740	18765743	+	RNA	DEL	TGTC	TGTC	-		Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	TGTC	TGTC	TGTC	-	TGTC	TGTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	22	18765740	18765743	TGTC	-	DEL	PI4KAP1	NR_003563	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1.000:1.000:1.000:1.000	-	-	(deletion:rna[18765726,18765815])	pseudogene
FBLN2	2199	genome.wustl.edu	36	3	13654167	13654167	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	3	13654167	13654167	C	A	SNP	FBLN2	NM_001004019	human	genbank	54_36p	1	reviewed	nonsense	c.3444	p.C1148*	0.99	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
C3orf58	205428	genome.wustl.edu	36	3	145187105	145187105	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	3	145187105	145187105	G	C	SNP	C3orf58	NM_173552	human	genbank	54_36p	1	validated	missense	c.688	p.A230P	1	NULL	-	-	no_errors
CPN2	1370	genome.wustl.edu	36	3	195544164	195544164	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	3	195544164	195544164	T	C	SNP	CPN2	NM_001080513	human	genbank	54_36p	-1	validated	silent	c.963	p.S321	0.225	NULL	-	-	no_errors
ITPR1	3708	genome.wustl.edu	36	3	4791925	4791925	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	3	4791925	4791925	G	T	SNP	ITPR1	NM_001099952	human	genbank	54_36p	1	validated	splice_site	c.5836-1	e42-1	1	-	-	-	no_errors
PRICKLE2	166336	genome.wustl.edu	36	3	64060432	64060432	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	3	64060432	64060432	G	T	SNP	PRICKLE2	NM_198859	human	genbank	54_36p	-1	validated	missense	c.1870	p.L624I	1	NULL	-	-	no_errors
MTTP	4547	genome.wustl.edu	36	4	100762958	100762958	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	4	100762958	100762958	A	T	SNP	MTTP	NM_000253	human	genbank	54_36p	1	reviewed	missense	c.2615	p.Q872L	1	NULL	-	-	no_errors
TRPC3	7222	genome.wustl.edu	36	4	123043572	123043572	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	4	123043572	123043572	A	G	SNP	TRPC3	NM_003305	human	genbank	54_36p	-1	validated	missense	c.2129	p.V710A	1	NULL	-	-	no_errors
DCLK2	166614	genome.wustl.edu	36	4	151388206	151388206	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	4	151388206	151388206	G	A	SNP	DCLK2	NM_001040260	human	genbank	54_36p	1	validated	missense	c.1780	p.E594K	1	HMMPfam_Pkinase	HMMPfam_Pkinase;HMMPfam_DCX;superfamily_Protein kinase-like (PK-like);superfamily_Doublecortin (DC)	-	no_errors
NUP54	53371	genome.wustl.edu	36	4	77270860	77270860	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	4	77270860	77270860	C	T	SNP	NUP54	NM_017426	human	genbank	54_36p	-1	reviewed	missense	c.1029	p.M343I	1	NULL	-	-	no_errors
LVRN	206338	genome.wustl.edu	36	5	115351451	115351451	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	5	115351451	115351451	G	T	SNP	LVRN	NM_173800	human	genbank	54_36p	1	validated	missense	c.1021	p.A341S	0.72	NULL	-	-	no_errors
SEMA6A	57556	genome.wustl.edu	36	5	115855347	115855347	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	5	115855347	115855347	C	T	SNP	SEMA6A	NM_020796	human	genbank	54_36p	-1	validated	missense	c.523	p.A175T	1	HMMPfam_Sema	HMMPfam_Sema,superfamily_Sema domain,HMMPfam_PSI,superfamily_Plexin repeat	-	no_errors
PCDHGB4	8641	genome.wustl.edu	36	5	140749075	140749075	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	5	140749075	140749075	G	T	SNP	PCDHGB4	NM_003736	human	genbank	54_36p	1	reviewed	silent	c.1440	p.G480		NULL	-	-	no_errors
CCDC69	26112	genome.wustl.edu	36	5	150561404	150561404	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	5	150561404	150561404	G	C	SNP	CCDC69	NM_015621	human	genbank	54_36p	-1	validated	missense	c.163	p.R55G	0.73	NULL	-	-	no_errors
FAM153B	202134	genome.wustl.edu	36	5	175452856	175452856	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	5	175452856	175452856	A	T	SNP	FAM153B	NM_001079529	human	genbank	54_36p	1	validated	silent	c.312	p.T104		NULL	-	-	no_errors
UIMC1	51720	genome.wustl.edu	36	5	176329306	176329306	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	5	176329306	176329306	C	T	SNP	UIMC1	NM_016290	human	genbank	54_36p	-1	provisional	missense	c.365	p.R122Q	1	NULL	-	-	no_errors
AGXT2	64902	genome.wustl.edu	36	5	35071120	35071120	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	5	35071120	35071120	C	G	SNP	AGXT2	NM_031900	human	genbank	54_36p	-1	reviewed	missense	c.545	p.R182T	1	HMMPfam_Aminotran_3	HMMPfam_Aminotran_3;superfamily_PLP-dependent transferases	-	no_errors
CEP57L1	285753	genome.wustl.edu	36	6	109587359	109587359	+	Splice_Site	SNP	G	G	A		Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	6	109587359	109587359	G	A	SNP	C6orf182	NM_001083535	human	genbank	54_36p	1	validated	splice_site	c.1016+1	e8+1	0.995	-	-	-	no_errors
HIST1H2BD	3017	genome.wustl.edu	36	6	26266730	26266730	+	Silent	SNP	C	C	G		Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	6	26266730	26266730	C	G	SNP	HIST1H2BD	NM_021063	human	genbank	54_36p	1	reviewed	silent	c.354	p.A118	0.998	NULL	-	-	no_errors
PPP1R10	5514	genome.wustl.edu	36	6	30680465	30680465	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	6	30680465	30680465	G	T	SNP	PPP1R10	NM_002714	human	genbank	54_36p	-1	reviewed	missense	c.981	p.S327R	0.01	NULL	HMMPfam_zf-CCCH;superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70;superfamily_CCCH zinc finger	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	73025449	73025449	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	6	73025449	73025449	T	C	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	silent	c.2967	p.S989	1	NULL	HMMPfam_C2;HMMPfam_PDZ;superfamily_PDZ domain-like;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_FYVE/PHD zinc finger	-	no_errors
CUX1	1523	genome.wustl.edu	36	7	101627217	101627217	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	7	101627217	101627217	T	G	SNP	CUX1	NM_181552	human	genbank	54_36p	1	reviewed	silent	c.1806	p.R602	0.19	NULL	-	-	no_errors
FLNC	2318	genome.wustl.edu	36	7	128271524	128271524	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	7	128271524	128271524	G	T	SNP	FLNC	NM_001458	human	genbank	54_36p	1	reviewed	missense	c.3160	p.V1054L	1	NULL	-	-	no_errors
TSGA13	114960	genome.wustl.edu	36	7	130008148	130008148	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	7	130008148	130008148	C	T	SNP	TSGA13	NM_052933	human	genbank	54_36p	-1	provisional	missense	c.496	p.D166N		NULL	-	-	no_errors
GALNTL5	168391	genome.wustl.edu	36	7	151347688	151347688	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	7	151347688	151347688	G	A	SNP	GALNTL5	NM_145292	human	genbank	54_36p	1	provisional	missense	c.1201	p.G401S	0.42	NULL	HMMPfam_Glycos_transf_2;superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
LOC441228	441228	genome.wustl.edu	36	7	56325666	56325679	+	RNA	DEL	TCTCTAGCAGACTG	TCTCTAGCAGACTG	-	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	TCTCTAGCAGACTG	TCTCTAGCAGACTG	TCTCTAGCAGACTG	-	TCTCTAGCAGACTG	TCTCTAGCAGACTG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	7	56325666	56325679	TCTCTAGCAGACTG	-	DEL	LOC441228	XR_016387	human	genbank	54_36p	1	model	rna	NULL	NULL	1.000:1.000:0.999:1.000:1.000:0.993:1.000:0.999:0.996:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:rna[56325106;56327174])	no_errors
LOC100133180	100133180	genome.wustl.edu	36	X	73267986	73267986	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	X	73267986	73267986	C	T	SNP	LOC100133180	XR_037576	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
SLC25A32	81034	genome.wustl.edu	36	8	104489040	104489040	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	8	104489040	104489040	G	T	SNP	SLC25A32	NM_030780	human	genbank	54_36p	-1	validated	missense	c.303	p.F101L	1	NULL	-	-	no_errors
NRG1	3084	genome.wustl.edu	36	8	32625179	32625179	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	8	32625179	32625179	G	T	SNP	NRG1	NM_013959	human	genbank	54_36p	1	reviewed	missense	c.401	p.W134L	0.99	NULL	-	-	no_errors
SNAI2	6591	genome.wustl.edu	36	8	49994099	49994099	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	8	49994099	49994099	C	A	SNP	SNAI2	NM_003068	human	genbank	54_36p	-1	reviewed	silent	c.627	p.G209	1	NULL	HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
COL15A1	1306	genome.wustl.edu	36	9	100850068	100850068	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	9	100850068	100850068	A	C	SNP	COL15A1	NM_001855	human	genbank	54_36p	1	reviewed	missense	c.2758	p.K920Q	1	HMMPfam_Collagen	HMMPfam_Collagen;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Endostatin;superfamily_C-type lectin-like	-	no_errors
RNF20	56254	genome.wustl.edu	36	9	103352710	103352710	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	9	103352710	103352710	T	G	SNP	RNF20	NM_019592	human	genbank	54_36p	1	reviewed	missense	c.1094	p.V365G	1	NULL	HMMPfam_zf-C3HC4;superfamily_Prefoldin;superfamily_STAT;superfamily_RING/U-box	-	no_errors
SCAI	286205	genome.wustl.edu	36	9	126868126	126868126	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	9	126868126	126868126	T	A	SNP	C9orf126	NM_173690	human	genbank	54_36p	-1	validated	missense	c.131	p.Q44L	0.43	NULL	-	-	no_errors
EXOSC2	23404	genome.wustl.edu	36	9	132568284	132568284	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	9	132568284	132568284	G	T	SNP	EXOSC2	NM_014285	human	genbank	54_36p	1	validated	missense	c.696	p.E232D	1	NULL	-	-	no_errors
SLC24A2	25769	genome.wustl.edu	36	9	19540152	19540152	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	9	19540152	19540152	G	T	SNP	SLC24A2	NM_020344	human	genbank	54_36p	-1	provisional	missense	c.1462	p.P488T	1	NULL	HMMPfam_Na_Ca_ex	-	no_errors
KRT18P44	139748	genome.wustl.edu	36	X	127676354	127676354	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	X	127676354	127676354	G	A	SNP	KRT18P44	XM_001719134	human	genbank	54_36p	1	model	missense	c.727	p.A243T	0.91	NULL	-	-	pseudogene
PASD1	139135	genome.wustl.edu	36	X	150544610	150544610	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	X	150544610	150544610	C	T	SNP	PASD1	NM_173493	human	genbank	54_36p	1	validated	missense	c.581	p.A194V		NULL	superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
ATP2B3	492	genome.wustl.edu	36	X	152498933	152498933	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	X	152498933	152498933	G	A	SNP	ATP2B3	NM_001001344	human	genbank	54_36p	1	reviewed	missense	c.3646	p.V1216M	0.98	NULL	HMMPfam_Cation_ATPase_N;HMMPfam_Hydrolase;HMMPfam_Cation_ATPase_C;HMMPfam_E1-E2_ATPase;superfamily_HAD-like;superfamily_Calcium ATPase transduction domain A;superfamily_Metal cation-transporting ATPase ATP-binding domain N;superfamily_Calcium ATPase transmembrane domain M	-	no_errors
IL1RAPL1	11141	genome.wustl.edu	36	X	29848010	29848010	+	Missense_Mutation	SNP	A	A	C		Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3a4b0c6a-1f43-437c-b715-fc50c1c0303d	4d020436-5a7e-42bc-af98-233e3d2d025d	X	29848010	29848010	A	C	SNP	IL1RAPL1	NM_014271	human	genbank	54_36p	1	reviewed	missense	c.935	p.E312A	1	HMMPfam_ig	HMMPfam_TIR,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors