Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error HSD3B2 3284 genome.wustl.edu 36 1 119766708 119766708 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 119766708 119766708 A T SNP HSD3B2 NM_000198 human genbank 54_36p 1 validated missense c.1061 p.E354V 0.8 NULL HMMPfam_3Beta_HSD;superfamily_NAD(P)-binding Rossmann-fold domains - no_errors OR6K3 391114 genome.wustl.edu 36 1 156954197 156954197 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 156954197 156954197 C G SNP OR6K3 NM_001005327 human genbank 54_36p -1 provisional missense c.381 p.E127D NULL - - no_errors SPATA21 374955 genome.wustl.edu 36 1 16598576 16598576 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 16598576 16598576 T C SNP SPATA21 NM_198546 human genbank 54_36p -1 provisional missense c.1202 p.Q401R 0.99 NULL - - no_errors PADI3 51702 genome.wustl.edu 36 1 17472520 17472520 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 17472520 17472520 A T SNP PADI3 NM_016233 human genbank 54_36p 1 reviewed missense c.1146 p.K382N 0.31 NULL - - no_errors PADI4 23569 genome.wustl.edu 36 1 17547048 17547048 + Missense_Mutation SNP A A T Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A T A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 17547048 17547048 A T SNP PADI4 NM_012387 human genbank 54_36p 1 reviewed missense c.1073 p.Q358L 1 NULL - - no_errors ACTL8 81569 genome.wustl.edu 36 1 18025484 18025484 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 18025484 18025484 G C SNP ACTL8 NM_030812 human genbank 54_36p 1 provisional missense c.984 p.W328C NULL - - no_errors HMCN1 83872 genome.wustl.edu 36 1 184258889 184258889 + Silent SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 184258889 184258889 C T SNP HMCN1 NM_031935 human genbank 54_36p 1 reviewed silent c.5730 p.H1910 1 NULL - - no_errors UBR4 23352 genome.wustl.edu 36 1 19366167 19366167 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 19366167 19366167 G C SNP UBR4 NM_020765 human genbank 54_36p -1 validated missense c.4045 p.R1349G 1 NULL - - no_errors IPO9 55705 genome.wustl.edu 36 1 200087914 200087914 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 200087914 200087914 G A SNP IPO9 NM_018085 human genbank 54_36p 1 validated missense c.574 p.E192K 1 NULL HMMPfam_IBN_N;superfamily_ARM repeat - no_errors KCTD3 51133 genome.wustl.edu 36 1 213813754 213813754 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 213813754 213813754 T G SNP KCTD3 NM_016121 human genbank 54_36p 1 validated missense c.86 p.F29C 1 NULL - - no_errors CLSPN 63967 genome.wustl.edu 36 1 35998743 35998743 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 35998743 35998743 G C SNP CLSPN NM_022111 human genbank 54_36p -1 reviewed missense c.1366 p.L456V 0.16 NULL - - no_errors THRAP3 9967 genome.wustl.edu 36 1 36534860 36534860 + Silent SNP T T A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 36534860 36534860 T A SNP THRAP3 NM_005119 human genbank 54_36p 1 validated silent c.2205 p.G735 0.98 NULL - - no_errors DNAJC6 9829 genome.wustl.edu 36 1 65627639 65627639 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 1 65627639 65627639 G T SNP DNAJC6 NM_014787 human genbank 54_36p 1 validated nonsense c.1135 p.E379* 1 NULL HMMPfam_DnaJ;superfamily_Chaperone J-domain;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_(Phosphotyrosine protein) phosphatases II - no_errors TNKS2 80351 genome.wustl.edu 36 10 93592071 93592071 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 10 93592071 93592071 G C SNP TNKS2 NM_025235 human genbank 54_36p 1 validated missense c.2002 p.D668H 1 NULL HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_SAM/Pointed domain;HMMPfam_SAM_2;HMMPfam_PARP;superfamily_ADP-ribosylation - no_errors ABCG4 64137 genome.wustl.edu 36 11 118536908 118536908 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 11 118536908 118536908 C T SNP ABCG4 NM_022169 human genbank 54_36p 1 reviewed missense c.1823 p.A608V 0.8 NULL HMMPfam_ABC_tran;HMMPfam_ABC2_membrane;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors SLC1A2 6506 genome.wustl.edu 36 11 35290516 35290516 + Silent SNP C C A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 11 35290516 35290516 C A SNP SLC1A2 NM_004171 human genbank 54_36p -1 reviewed silent c.366 p.V122 1 HMMPfam_SDF HMMPfam_SDF - no_errors OR5M1 390168 genome.wustl.edu 36 11 56137236 56137236 + Silent SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 11 56137236 56137236 G A SNP OR5M1 NM_001004740 human genbank 54_36p -1 provisional silent c.319 p.L107 0.29 NULL - - no_errors SHANK2 22941 genome.wustl.edu 36 11 70009842 70009842 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 11 70009842 70009842 C A SNP SHANK2 NM_012309 human genbank 54_36p -1 reviewed missense c.2419 p.D807Y 1 NULL HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_SAM_1;superfamily_SAM/Pointed domain - no_errors KIAA0748 9840 genome.wustl.edu 36 12 53641242 53641242 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 12 53641242 53641242 G T SNP KIAA0748 NM_001098815 human genbank 54_36p -1 validated missense c.1544 p.T515N NULL - - no_errors FLT1 2321 genome.wustl.edu 36 13 27878000 27878000 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 13 27878000 27878000 A G SNP FLT1 NM_002019 human genbank 54_36p -1 validated missense c.1468 p.F490L 0.11 NULL superfamily_Protein kinase-like (PK-like);superfamily_Immunoglobulin;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;I-set;HMMPfam_I-set;ig;HMMPfam_ig - no_errors CKAP2 26586 genome.wustl.edu 36 13 51946157 51946157 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 13 51946157 51946157 A G SNP CKAP2 NM_001098525 human genbank 54_36p 1 validated missense c.1742 p.N581S NULL - - no_errors RBM26 64062 genome.wustl.edu 36 13 78831779 78831779 + Silent SNP T T G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 13 78831779 78831779 T G SNP RBM26 NM_022118 human genbank 54_36p -1 validated silent c.1461 p.S487 1 NULL HMMPfam_RRM_1;HMMPfam_zf-CCCH;HMMPfam_DUF1777;superfamily_PWI domain;superfamily_RNA-binding domain RBD;superfamily_CCCH zinc finger - no_errors KIAA0317 9870 genome.wustl.edu 36 14 74219932 74219932 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 14 74219932 74219932 G A SNP KIAA0317 NM_001039479 human genbank 54_36p -1 validated missense c.301 p.H101Y 1 HMMPfam_Filamin HMMPfam_HECT;HMMPfam_Filamin;superfamily_E set domains;superfamily_Hect E3 ligase catalytic domain - no_errors C14orf178 283579 genome.wustl.edu 36 14 77305763 77305763 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 14 77305763 77305763 G T SNP C14orf178 NM_174943 human genbank 54_36p 1 predicted missense c.358 p.A120S NULL - - no_errors ZFP106 64397 genome.wustl.edu 36 15 40529814 40529814 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 15 40529814 40529814 C T SNP ZFP106 NM_022473 human genbank 54_36p -1 provisional missense c.1879 p.E627K NULL HMMPfam_WD40;HMMPfam_zf-C2H2;superfamily_WD40 repeat-like;superfamily_C2H2 and C2HC zinc fingers - no_errors CORO2B 10391 genome.wustl.edu 36 15 66790129 66790129 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 15 66790129 66790129 G A SNP CORO2B NM_006091 human genbank 54_36p 1 validated missense c.338 p.R113Q 1 NULL - - no_errors ABCA3 21 genome.wustl.edu 36 16 2298452 2298452 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 16 2298452 2298452 C T SNP ABCA3 NM_001089 human genbank 54_36p -1 reviewed missense c.1285 p.G429S 1 NULL HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors UBE2MP1 606551 genome.wustl.edu 36 16 34261983 34261983 + RNA SNP G G C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 16 34261983 34261983 G C SNP UBE2MP1 NR_002837 human genbank 54_36p -1 provisional rna NULL NULL 1 - - - pseudogene PLXDC1 57125 genome.wustl.edu 36 17 34549525 34549525 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 17 34549525 34549525 C A SNP PLXDC1 NM_020405 human genbank 54_36p -1 validated missense c.163 p.V55L 0.16 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7517846 7517846 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA;Sanger_PCR_WGA dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 17 7517846 7517846 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.817 p.R273C 0.8 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors TP53 7157 genome.wustl.edu 36 17 7518263 7518263 + Missense_Mutation SNP C C T rs11540652 Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 17 7518263 7518263 C T SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.743 p.R248Q 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors CCDC42 146849 genome.wustl.edu 36 17 8587687 8587687 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 17 8587687 8587687 C A SNP CCDC42 NM_144681 human genbank 54_36p -1 provisional missense c.276 p.K92N 1 NULL - - no_errors LOC646359 646359 genome.wustl.edu 36 18 14367947 14367947 + Silent SNP T T C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 18 14367947 14367947 T C SNP LOC646359 XM_929288 human genbank 54_36p -1 model silent c.816 p.E272 0.01 NULL - - no_errors ZNF236 7776 genome.wustl.edu 36 18 72692796 72692796 + Silent SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 18 72692796 72692796 G A SNP ZNF236 NM_007345 human genbank 54_36p 1 validated silent c.270 p.G90 0.99 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors SNRPA 6626 genome.wustl.edu 36 19 45957227 45957227 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 19 45957227 45957227 A G SNP SNRPA NM_004596 human genbank 54_36p 1 provisional missense c.298 p.T100A 1 NULL - - no_errors ARHGEF1 9138 genome.wustl.edu 36 19 47084732 47084732 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 19 47084732 47084732 G A SNP ARHGEF1 NM_199002 human genbank 54_36p 1 reviewed missense c.226 p.A76T 1 NULL - - no_errors FBN3 84467 genome.wustl.edu 36 19 8097368 8097368 + Silent SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 19 8097368 8097368 G A SNP FBN3 NM_032447 human genbank 54_36p -1 reviewed silent c.2538 p.C846 1 HMMPfam_TB HMMPfam_TB,HMMPfam_EGF,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,superfamily_EGF/Laminin,superfamily_TB module/8-cys domain - no_errors FBN3 84467 genome.wustl.edu 36 19 8112902 8112902 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 19 8112902 8112902 G A SNP FBN3 NM_032447 human genbank 54_36p -1 reviewed missense c.661 p.P221S 1 HMMPfam_TB HMMPfam_TB;HMMPfam_EGF;superfamily_Growth factor receptor domain;HMMPfam_EGF_CA;superfamily_EGF/Laminin;superfamily_TB module/8-cys domain - no_errors NEB 4703 genome.wustl.edu 36 2 152220659 152220659 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 2 152220659 152220659 T G SNP NEB NM_004543 human genbank 54_36p -1 reviewed missense c.6620 p.H2207P 1 NULL - - no_errors ITGA6 3655 genome.wustl.edu 36 2 173052679 173052679 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 2 173052679 173052679 C A SNP ITGA6 NM_001079818 human genbank 54_36p 1 reviewed missense c.1453 p.Q485K 1 NULL - - no_errors HECW2 57520 genome.wustl.edu 36 2 196880187 196880187 + Silent SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 2 196880187 196880187 G A SNP HECW2 NM_020760 human genbank 54_36p -1 provisional silent c.2601 p.R867 1 NULL HMMPfam_C2;HMMPfam_HECT;HMMPfam_WW;superfamily_WW domain;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_Hect E3 ligase catalytic domain - no_errors SH3YL1 26751 genome.wustl.edu 36 2 221084 221084 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 2 221084 221084 T C SNP SH3YL1 NM_015677 human genbank 54_36p -1 provisional missense c.353 p.Y118C 1 NULL - - no_errors MAP4K3 8491 genome.wustl.edu 36 2 39368821 39368821 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 2 39368821 39368821 T G SNP MAP4K3 NM_003618 human genbank 54_36p -1 reviewed missense c.1419 p.Q473H 0.981 NULL Pkinase,HMMPfam_Pkinase,CNH,HMMPfam_CNH - no_errors LOC730187 730187 genome.wustl.edu 36 2 64746638 64746638 + RNA SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 2 64746638 64746638 G A SNP LOC730187 XR_042354 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene TGM3 7053 genome.wustl.edu 36 20 2260705 2260705 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 20 2260705 2260705 C G SNP TGM3 NM_003245 human genbank 54_36p 1 reviewed missense c.1391 p.T464R NULL HMMPfam_Transglut_C;superfamily_Transglutaminase two C-terminal domains;superfamily_E set domains;superfamily_Cysteine proteinases;HMMPfam_Transglut_N;HMMPfam_Transglut_core - no_errors CEP250 11190 genome.wustl.edu 36 20 33559424 33559424 + Silent SNP C C G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 20 33559424 33559424 C G SNP CEP250 NM_007186 human genbank 54_36p 1 reviewed silent c.6897 p.T2299 0.64 NULL - - no_errors DSN1 79980 genome.wustl.edu 36 20 34829827 34829827 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 20 34829827 34829827 C A SNP DSN1 NM_024918 human genbank 54_36p -1 reviewed nonsense c.388 p.E130* 0.99 HMMPfam_Mis12_component HMMPfam_Mis12_component - no_errors XRCC6 2547 genome.wustl.edu 36 22 40379603 40379603 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 22 40379603 40379603 A C SNP XRCC6 NM_001469 human genbank 54_36p 1 reviewed missense c.1254 p.E418D 1 HMMPfam_Ku HMMPfam_SAP;HMMPfam_Ku_C;HMMPfam_Ku_N;HMMPfam_Ku;superfamily_SPOC domain-like;superfamily_vWA-like;superfamily_SAP domain - no_errors TRPC1 7220 genome.wustl.edu 36 3 143994491 143994491 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 3 143994491 143994491 C T SNP TRPC1 NM_003304 human genbank 54_36p 1 validated missense c.1471 p.P491S 1 NULL - - no_errors LOC131054 131054 genome.wustl.edu 36 3 181524401 181524401 + RNA SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 3 181524401 181524401 G A SNP LOC131054 XR_017452 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene SCN5A 6331 genome.wustl.edu 36 3 38602210 38602210 + Silent SNP A A G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 3 38602210 38602210 A G SNP SCN5A NM_001099404 human genbank 54_36p -1 reviewed silent c.2763 p.L921 0.99 NULL - - no_errors ZNF167 55888 genome.wustl.edu 36 3 44586786 44586786 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 3 44586786 44586786 C T SNP ZNF167 NM_018651 human genbank 54_36p 1 validated missense c.1180 p.R394W 0.39 NULL - - no_errors PROM1 8842 genome.wustl.edu 36 4 15600486 15600486 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 4 15600486 15600486 G T SNP PROM1 NM_006017 human genbank 54_36p -1 reviewed missense c.2043 p.H681Q 0.17 HMMPfam_Prominin HMMPfam_Prominin - no_errors TLL1 7092 genome.wustl.edu 36 4 167135691 167135691 + Silent SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 4 167135691 167135691 C T SNP TLL1 NM_012464 human genbank 54_36p 1 reviewed silent c.543 p.A181 1 NULL - - no_errors MUC7 4589 genome.wustl.edu 36 4 71381416 71381416 + Silent SNP A A G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 4 71381416 71381416 A G SNP MUC7 NM_152291 human genbank 54_36p 1 reviewed silent c.366 p.K122 NULL - - no_errors PCDHA4 56144 genome.wustl.edu 36 5 140169017 140169017 + Silent SNP G G C novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 5 140169017 140169017 G C SNP PCDHA4 NM_018907 human genbank 54_36p 1 reviewed silent c.2061 p.V687 NULL - - no_errors PCDHA10 56139 genome.wustl.edu 36 5 140217927 140217927 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 5 140217927 140217927 G A SNP PCDHA10 NM_018901 human genbank 54_36p 1 reviewed missense c.2110 p.A704T 0.998 NULL - - no_errors PCDHGA5 56110 genome.wustl.edu 36 5 140725485 140725485 + Silent SNP T T G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 5 140725485 140725485 T G SNP PCDHGA5 NM_018918 human genbank 54_36p 1 reviewed silent c.1404 p.G468 0.18 NULL - - no_errors PLEKHG4B 153478 genome.wustl.edu 36 5 209279 209279 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 5 209279 209279 G T SNP PLEKHG4B NM_052909 human genbank 54_36p 1 validated missense c.1234 p.V412F 0.83 NULL - - no_errors CDH10 1008 genome.wustl.edu 36 5 24571018 24571018 + Silent SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 5 24571018 24571018 C T SNP CDH10 NM_006727 human genbank 54_36p -1 reviewed silent c.774 p.T258 0.98 HMMPfam_Cadherin HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors DHX29 54505 genome.wustl.edu 36 5 54616938 54616938 + Silent SNP A A G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 5 54616938 54616938 A G SNP DHX29 NM_019030 human genbank 54_36p -1 validated silent c.1296 p.D432 1 NULL - - no_errors TIAM2 26230 genome.wustl.edu 36 6 155492159 155492159 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 6 155492159 155492159 C T SNP TIAM2 NM_012454 human genbank 54_36p 1 reviewed missense c.110 p.A37V 0.95 NULL HMMPfam_RhoGEF;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_PH;superfamily_HR1 repeat;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like - no_errors SLC17A3 10786 genome.wustl.edu 36 6 25970218 25970218 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 6 25970218 25970218 A T SNP SLC17A3 NM_001098486 human genbank 54_36p -1 validated missense c.322 p.S108T 0.73 NULL - - no_errors HIST1H4H 8365 genome.wustl.edu 36 6 26393660 26393660 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 6 26393660 26393660 G A SNP HIST1H4H NM_003543 human genbank 54_36p -1 reviewed missense c.47 p.A16V 1 NULL - - no_errors NQO2 4835 genome.wustl.edu 36 6 2960781 2960781 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 6 2960781 2960781 A T SNP NQO2 NM_000904 human genbank 54_36p 1 validated missense c.322 p.S108C 1 NULL - - no_errors FANCE 2178 genome.wustl.edu 36 6 35531959 35531959 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 6 35531959 35531959 C T SNP FANCE NM_021922 human genbank 54_36p 1 reviewed missense c.706 p.H236Y NULL - - no_errors MDN1 23195 genome.wustl.edu 36 6 90479147 90479147 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 6 90479147 90479147 C A SNP MDN1 NM_014611 human genbank 54_36p -1 provisional missense c.7298 p.G2433V 1 NULL - - no_errors LOC100129067 100129067 genome.wustl.edu 36 11 61855199 61855199 + RNA SNP A A T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 11 61855199 61855199 A T SNP LOC100129067 XR_038268 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene LOC728500 728500 genome.wustl.edu 36 7 57009139 57009139 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 7 57009139 57009139 G A SNP LOC728500 XM_001127570 human genbank 54_36p -1 model missense c.547 p.H183Y 0 NULL - - no_errors SPDYE7P 441251 genome.wustl.edu 36 7 71977242 71977242 + RNA SNP T T G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 7 71977242 71977242 T G SNP SPDYE7P NR_003666 human genbank 54_36p -1 provisional rna NULL NULL 0.05 - - - pseudogene ZFPM2 23414 genome.wustl.edu 36 8 106525714 106525714 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 8 106525714 106525714 A G SNP ZFPM2 NM_012082 human genbank 54_36p 1 reviewed missense c.230 p.E77G 1 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors PTPN3 5774 genome.wustl.edu 36 9 111224844 111224844 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 9 111224844 111224844 G A SNP PTPN3 NM_002829 human genbank 54_36p -1 reviewed missense c.1111 p.R371C 0.99 NULL HMMPfam_Y_phosphatase;HMMPfam_Band_41;HMMPfam_PDZ;superfamily_PDZ domain-like;superfamily_Second domain of FERM;superfamily_PH domain-like;superfamily_(Phosphotyrosine protein) phosphatases II;superfamily_Ubiquitin-like - no_errors LOC158345 158345 genome.wustl.edu 36 9 7467699 7467699 + RNA SNP A A T novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 9 7467699 7467699 A T SNP LOC158345 XR_017130 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene FANCC 2176 genome.wustl.edu 36 9 97042810 97042810 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 9 97042810 97042810 C A SNP FANCC NM_000136 human genbank 54_36p -1 reviewed missense c.287 p.C96F 1 HMMPfam_Fanconi_C HMMPfam_Fanconi_C - no_errors TCEAL8 90843 genome.wustl.edu 36 X 102395435 102395435 + Silent SNP G G A novel Unknown TCGA-13-1499-01A-01W-0549-09 TCGA-13-1499-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx b4ce07b1-677e-4a9c-8f8e-2b7762487692 55f3ced3-2b89-4067-b0b6-7b282de945a2 X 102395435 102395435 G A SNP TCEAL8 NM_001006684 human genbank 54_36p -1 reviewed silent c.129 p.S43 0.83 NULL - - no_errors