Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
SLC22A15	55356	genome.wustl.edu	36	1	116363787	116363787	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	1	116363787	116363787	G	C	SNP	SLC22A15	NM_018420	human	genbank	54_36p	1	validated	missense	c.326	p.G109A	1	NULL	-	-	no_errors
GDAP2	54834	genome.wustl.edu	36	1	118222153	118222153	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	1	118222153	118222153	C	T	SNP	GDAP2	NM_017686	human	genbank	54_36p	-1	validated	splice_site	c.1446+1	e12+1	1	-	-	-	no_errors
HORMAD1	84072	genome.wustl.edu	36	1	148947432	148947432	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	1	148947432	148947432	A	T	SNP	HORMAD1	NM_032132	human	genbank	54_36p	-1	provisional	silent	c.471	p.I157	1	NULL	-	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150545961	150545961	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	1	150545961	150545961	A	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	silent	c.8025	p.A2675	0	NULL	-	-	no_errors
KPRP	448834	genome.wustl.edu	36	1	151000349	151000349	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	1	151000349	151000349	G	A	SNP	KPRP	NM_001025231	human	genbank	54_36p	1	provisional	missense	c.1661	p.R554Q	0.01	NULL	-	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245666066	245666066	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	1	245666066	245666066	G	C	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	splice_site	c.2669+1	e6+1	1	-	-	-	no_errors
AK2	204	genome.wustl.edu	36	1	33251378	33251378	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	1	33251378	33251378	C	G	SNP	AK2	NM_001625	human	genbank	54_36p	-1	reviewed	missense	c.711	p.M237I	1	NULL	"HMMPfam_ADK;HMMPfam_ADK_lid;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Microbial and mitochondrial ADK insert ""zinc finger"" domain"	-	no_errors
CLCA2	9635	genome.wustl.edu	36	1	86672867	86672867	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	1	86672867	86672867	G	T	SNP	CLCA2	NM_006536	human	genbank	54_36p	1	reviewed	missense	c.823	p.A275S	0.74	NULL	HMMPfam_VWA;HMMPfam_CLCA_N;HMMPfam_DUF1973;superfamily_vWA-like	-	no_errors
ENTPD7	57089	genome.wustl.edu	36	10	101429140	101429140	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	10	101429140	101429140	C	A	SNP	ENTPD7	NM_020354	human	genbank	54_36p	1	validated	missense	c.324	p.N108K	1	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39	-	no_errors
FAM171A1	221061	genome.wustl.edu	36	10	15296371	15296371	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	10	15296371	15296371	C	A	SNP	FAM171A1	NM_001010924	human	genbank	54_36p	-1	validated	missense	c.1222	p.G408W	0.71	NULL	-	-	no_errors
BICC1	80114	genome.wustl.edu	36	10	60230718	60230719	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	GG	GG	GG	TT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	10	60230718	60230719	GG	TT	DNP	BICC1	NM_001080512	human	genbank	54_36p	1	provisional	missense	c.1921_1922	p.G641F	0.997:0.984	NULL	-	-	no_errors
LOC283116	283116	genome.wustl.edu	36	11	49009893	49009893	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	11	49009893	49009893	A	C	SNP	LOC283116	XM_208043	human	genbank	54_36p	1	model	missense	c.166	p.T56P	0.65	NULL	-	-	no_errors
SLC22A12	116085	genome.wustl.edu	36	11	64115725	64115747	+	Frame_Shift_Del	DEL	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	-	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	-	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	11	64115725	64115747	TCGGCCGCCGTGCCCAGCCACCG	-	DEL	SLC22A12	NM_144585	human	genbank	54_36p	1	reviewed	frame_shift_del	c.121_143	p.S41fs	0.998:0.996:0.987:0.993:0.953:0.668:0.677:0.636:0.570:0.906:0.968:0.970:0.997:0.994:0.765:0.719:0.719:0.758:0.997:1.000:0.998:1.000:1.000	NULL	HMMPfam_MFS_1;superfamily_MFS general substrate transporter	(deletion:cds_exon[64115605;64116006])	no_errors
KRT2	3849	genome.wustl.edu	36	12	51327830	51327830	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	12	51327830	51327830	T	C	SNP	KRT2	NM_000423	human	genbank	54_36p	-1	reviewed	missense	c.1199	p.N400S	1	HMMPfam_Filament	HMMPfam_Filament;superfamily_Prefoldin	-	no_errors
TMBIM4	51643	genome.wustl.edu	36	12	64832396	64832396	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	12	64832396	64832396	G	A	SNP	TMBIM4	NM_016056	human	genbank	54_36p	-1	validated	silent	c.234	p.L78	0.93	NULL	-	-	no_errors
LOC100128729	100128729	genome.wustl.edu	36	7	128005280	128005280	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	7	128005280	128005280	G	A	SNP	LOC100128729	XR_042327	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100131134	100131134	genome.wustl.edu	36	7	128280650	128280650	+	Silent	SNP	T	A	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	7	128280650	128280650	T	A	SNP	LOC100131134	XM_001726492	human	genbank	54_36p	-1	model	silent	c.9	p.V3	0	NULL	-	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108116343	108116343	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	13	108116343	108116343	G	A	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	missense	c.71	p.R24H	1	NULL	HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CTSG	1511	genome.wustl.edu	36	14	24112714	24112714	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	14	24112714	24112714	T	A	SNP	CTSG	NM_001911	human	genbank	54_36p	-1	reviewed	missense	c.737	p.K246I		NULL	-	-	no_errors
uc003vxi.2	0	genome.wustl.edu	36	7	141667577	141667577	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	7	141667577	141667577	T	C	SNP	uc003vxi.2	ENST00000390352	human	ensembl	54_36p	1	known	silent	c.72	p.T24		NULL	-	-	no_stop_codon:bad_bp_length_for_coding_region
UNC13C	440279	genome.wustl.edu	36	15	52093232	52093232	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	15	52093232	52093232	T	A	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	missense	c.840	p.S280R	0.98	NULL	-	-	no_errors
ISLR	3671	genome.wustl.edu	36	15	72254722	72254722	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	15	72254722	72254722	G	A	SNP	ISLR	NM_005545	human	genbank	54_36p	1	validated	missense	c.470	p.R157H	0.99	HMMPfam_LRR_1	HMMPfam_LRRCT;HMMPfam_LRR_1;HMMPfam_I-set;superfamily_Immunoglobulin;superfamily_L domain-like	-	no_errors
LOC653641	653641	genome.wustl.edu	36	15	73343458	73343458	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	15	73343458	73343458	A	G	SNP	LOC653641	XM_496076	human	genbank	54_36p	1	model	missense	c.545	p.Q182R	1	NULL	-	-	no_errors
IL16	3603	genome.wustl.edu	36	15	79339214	79339214	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	15	79339214	79339214	C	A	SNP	IL16	NM_172217	human	genbank	54_36p	1	reviewed	missense	c.359	p.A120E	0.03	NULL	-	-	no_errors
SV2B	9899	genome.wustl.edu	36	15	89596149	89596149	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	15	89596149	89596149	C	T	SNP	SV2B	NM_014848	human	genbank	54_36p	1	validated	missense	c.548	p.A183V	1	HMMPfam_MFS_1	HMMPfam_MFS_1;superfamily_MFS general substrate transporter	-	no_errors
LOC100132032	100132032	genome.wustl.edu	36	22	15370301	15370301	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	22	15370301	15370301	C	T	SNP	LOC100132032	XM_001726273	human	genbank	54_36p	1	model	missense	c.91	p.R31W	0.9	NULL	-	-	no_errors
E4F1	1877	genome.wustl.edu	36	16	2222784	2222784	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	16	2222784	2222784	T	G	SNP	E4F1	NM_004424	human	genbank	54_36p	1	reviewed	missense	c.757	p.C253G	1	HMMPfam_zf-C2H2	HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ERN2	10595	genome.wustl.edu	36	16	23614081	23614081	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	16	23614081	23614081	C	A	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	nonsense	c.1885	p.E629*	1	HMMPfam_Pkinase	HMMPfam_Pkinase;HMMPfam_PQQ;HMMPfam_Ribonuc_2-5A;superfamily_Protein kinase-like (PK-like);superfamily_Quinoprotein alcohol dehydrogenase-like	-	no_errors
MMP2	4313	genome.wustl.edu	36	16	54089739	54089739	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	16	54089739	54089739	G	A	SNP	MMP2	NM_004530	human	genbank	54_36p	1	reviewed	silent	c.1647	p.E549	1	HMMPfam_Hemopexin	"HMMPfam_fn2;HMMPfam_Hemopexin;superfamily_Hemopexin-like domain;HMMPfam_Peptidase_M10;HMMPfam_PG_binding_1;superfamily_PGBD-like;superfamily_Kringle-like;superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ENSG00000214210	0	genome.wustl.edu	36	3	165202307	165202307	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	3	165202307	165202307	C	A	SNP	ENSG00000214210	ENST00000397815	human	ensembl	54_36p	-1	known	missense	c.354	p.Q118H		NULL	-	-	no_start_codon
ESPNP	284729	genome.wustl.edu	36	1	16903202	16903202	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	1	16903202	16903202	G	T	SNP	ESPNP	ENST00000270691	human	ensembl	54_36p	-1	known	silent	c.721	p.R241	1	NULL	HMMPfam_Ank;superfamily_ANK;HMMPfam_WH2	-	no_start_codon
MRC2	9902	genome.wustl.edu	36	17	58119433	58119433	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	17	58119433	58119433	G	A	SNP	MRC2	NM_006039	human	genbank	54_36p	1	validated	missense	c.2998	p.A1000T	1	HMMPfam_Lectin_C	HMMPfam_fn2;HMMPfam_Ricin_B_lectin;HMMPfam_Lectin_C;superfamily_Ricin B-like lectins;superfamily_Kringle-like;superfamily_C-type lectin-like	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517824	7517824	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	17	7517824	7517824	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.839	p.R280I	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
RFXANK	8625	genome.wustl.edu	36	19	19171021	19171021	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	19	19171021	19171021	C	T	SNP	RFXANK	NM_003721	human	genbank	54_36p	1	reviewed	silent	c.690	p.A230	0.69	HMMPfam_Ank	HMMPfam_Ank;superfamily_Ankyrin repeat	-	no_errors
SLC17A7	57030	genome.wustl.edu	36	19	54629855	54629855	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	19	54629855	54629855	G	A	SNP	SLC17A7	NM_020309	human	genbank	54_36p	-1	reviewed	silent	c.531	p.I177	1	HMMPfam_MFS_1	HMMPfam_MFS_1;superfamily_MFS general substrate transporter	-	no_errors
LENG1	79165	genome.wustl.edu	36	19	59352576	59352576	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	19	59352576	59352576	C	T	SNP	LENG1	NM_024316	human	genbank	54_36p	-1	provisional	splice_site	c.313-1	e3-1	1	-	-	-	no_errors
KIR3DX1	90011	genome.wustl.edu	36	19	59736895	59736895	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	19	59736895	59736895	G	T	SNP	KIR3DX1	ENST00000221567	human	ensembl	54_36p	1	known	missense	c.203	p.S68I		NULL	HMMPfam_ig;superfamily_SSF48726	-	no_errors
COL5A3	50509	genome.wustl.edu	36	19	9958016	9958016	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	19	9958016	9958016	C	G	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.2327	p.G776A	0.96	HMMPfam_Collagen	HMMPfam_COLFI;HMMPfam_Collagen;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_Fibrinogen C-terminal domain-like	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	125388203	125388203	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	2	125388203	125388203	C	A	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	nonsense	c.3789	p.Y1263*	1	NULL	HMMPfam_F5_F8_type_C;HMMPfam_EGF;superfamily_Galactose-binding domain-like;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_Fibrinogen C-terminal domain-like	-	no_errors
CASP10	843	genome.wustl.edu	36	2	201778884	201778884	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	2	201778884	201778884	C	T	SNP	CASP10	NM_032977	human	genbank	54_36p	1	reviewed	silent	c.756	p.V252		NULL	HMMPfam_DED;superfamily_DEATH domain;HMMPfam_Peptidase_C14;superfamily_Caspase-like	-	no_errors
RAPH1	65059	genome.wustl.edu	36	2	204028509	204028509	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	2	204028509	204028509	C	T	SNP	RAPH1	NM_213589	human	genbank	54_36p	-1	validated	missense	c.1198	p.E400K	1	HMMPfam_PH	HMMPfam_RA;HMMPfam_PH;superfamily_PH domain-like	-	no_errors
LOC402116	402116	genome.wustl.edu	36	2	209753098	209753098	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	2	209753098	209753098	G	T	SNP	LOC402116	XR_017081	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
HADHB	3032	genome.wustl.edu	36	2	26350074	26350074	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	2	26350074	26350074	C	T	SNP	HADHB	NM_000183	human	genbank	54_36p	1	reviewed	silent	c.306	p.I102	1	HMMPfam_Thiolase_N	HMMPfam_Thiolase_N;HMMPfam_Thiolase_C;superfamily_Thiolase-like	-	no_errors
KIDINS220	57498	genome.wustl.edu	36	2	8843568	8843568	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	2	8843568	8843568	G	T	SNP	KIDINS220	NM_020738	human	genbank	54_36p	-1	validated	silent	c.1983	p.V661	1	NULL	-	-	no_errors
PDYN	5173	genome.wustl.edu	36	20	1909196	1909196	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	20	1909196	1909196	G	A	SNP	PDYN	NM_024411	human	genbank	54_36p	-1	reviewed	missense	c.538	p.R180C	1	NULL	HMMPfam_Opiods_neuropep	-	no_errors
LOC100129743	100129743	genome.wustl.edu	36	2	203613403	203613403	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	2	203613403	203613403	C	T	SNP	LOC100129743	XM_001724736	human	genbank	54_36p	1	model	missense	c.328	p.L110F	0.92	NULL	-	-	pseudogene
DSCAM	1826	genome.wustl.edu	36	21	40427701	40427701	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	21	40427701	40427701	G	A	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	missense	c.3512	p.A1171V	0.99	NULL	-	-	no_errors
KRTAP10-9	386676	genome.wustl.edu	36	21	44871722	44871722	+	Nonsense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	21	44871722	44871722	C	G	SNP	KRTAP10-9	NM_198690	human	genbank	54_36p	1	validated	nonsense	c.206	p.S69*	0.11	NULL	HMMPfam_Keratin_B2	-	no_errors
NFKBIZ	64332	genome.wustl.edu	36	3	103057266	103057266	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	3	103057266	103057266	G	T	SNP	NFKBIZ	NM_031419	human	genbank	54_36p	1	reviewed	splice_site	c.1655-1	e9-1	1	-	-	-	no_errors
WDR5B	54554	genome.wustl.edu	36	3	123616346	123616346	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	3	123616346	123616346	G	T	SNP	WDR5B	NM_019069	human	genbank	54_36p	-1	reviewed	missense	c.720	p.S240R	1	NULL	-	-	no_errors
MRPS22	56945	genome.wustl.edu	36	3	140548472	140548472	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	3	140548472	140548472	C	G	SNP	MRPS22	NM_020191	human	genbank	54_36p	1	reviewed	missense	c.235	p.L79V	0.99	NULL	-	-	no_errors
ABCF3	55324	genome.wustl.edu	36	3	185388622	185388622	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	3	185388622	185388622	G	T	SNP	ABCF3	NM_018358	human	genbank	54_36p	1	validated	splice_site	c.570-1	e7-1	1	-	-	-	no_errors
CSRNP1	64651	genome.wustl.edu	36	3	39160740	39160740	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	3	39160740	39160740	C	T	SNP	AXUD1	NM_033027	human	genbank	54_36p	-1	reviewed	silent	c.672	p.K224	1	NULL	-	-	no_errors
RTP3	83597	genome.wustl.edu	36	3	46514655	46514655	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	3	46514655	46514655	T	A	SNP	RTP3	NM_031440	human	genbank	54_36p	1	provisional	silent	c.99	p.L33	0.01	NULL	-	-	no_errors
BBS12	166379	genome.wustl.edu	36	4	123882867	123882867	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	4	123882867	123882867	A	T	SNP	BBS12	NM_152618	human	genbank	54_36p	1	validated	missense	c.370	p.S124C	1	NULL	-	-	no_errors
BAI3	577	genome.wustl.edu	36	6	70097117	70097117	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	6	70097117	70097117	A	T	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	splice_site	c.3036-2	e21-2	1	-	-	-	no_errors
MAP3K7	6885	genome.wustl.edu	36	6	91314573	91314573	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	6	91314573	91314573	C	T	SNP	MAP3K7	NM_145331	human	genbank	54_36p	-1	reviewed	missense	c.994	p.D332N	1	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
EIF3IP1	442720	genome.wustl.edu	36	7	109386970	109386970	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	7	109386970	109386970	G	T	SNP	EIF3IP1	NR_003024	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
WNT16	51384	genome.wustl.edu	36	7	120766520	120766520	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	7	120766520	120766520	G	A	SNP	WNT16	NM_057168	human	genbank	54_36p	1	reviewed	missense	c.983	p.G328D	1	HMMPfam_wnt	HMMPfam_wnt	-	no_errors
TRIM24	8805	genome.wustl.edu	36	7	137920089	137920089	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	7	137920089	137920089	G	C	SNP	TRIM24	NM_015905	human	genbank	54_36p	1	reviewed	missense	c.3006	p.K1002N	1	NULL	zf-B_box;HMMPfam_zf-B_box;Bromodomain;HMMPfam_Bromodomain;zf-C3HC4;HMMPfam_zf-C3HC4;PHD;HMMPfam_PHD;FYVE/PHD zinc finger;superfamily_FYVE/PHD zinc finger;superfamily_Bromodomain;B-box zinc-binding domain;superfamily_B-box zinc-binding domain;RING/U-box;superfamily_RING/U-box	-	no_errors
MAGI2	9863	genome.wustl.edu	36	7	77723397	77723397	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	7	77723397	77723397	C	G	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	missense	c.1846	p.G616R	1	NULL	HMMPfam_WW;superfamily_WW domain;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_Guanylate_kin;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
STAG3	10734	genome.wustl.edu	36	7	99636423	99636423	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	7	99636423	99636423	C	T	SNP	STAG3	NM_012447	human	genbank	54_36p	1	validated	silent	c.1956	p.L652	1	NULL	HMMPfam_STAG,superfamily_ARM repeat	-	no_errors
ALDH1A1	216	genome.wustl.edu	36	9	74721788	74721788	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	9	74721788	74721788	C	T	SNP	ALDH1A1	ENST00000376939	human	ensembl	54_36p	-1	known	missense	c.683	p.S228N	0.98	NULL	-	-	no_errors
NXF4	55999	genome.wustl.edu	36	X	101709469	101709469	+	RNA	SNP	T	T	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	X	101709469	101709469	T	G	SNP	NXF4	NR_002216	human	genbank	54_36p	1	validated	rna	NULL	NULL	1	-	-	-	pseudogene
RGAG1	57529	genome.wustl.edu	36	X	109581565	109581565	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	X	109581565	109581565	C	A	SNP	RGAG1	NM_020769	human	genbank	54_36p	1	provisional	missense	c.1064	p.P355H	0.1	NULL	HMMPfam_Retrotrans_gag	-	no_errors
SLC6A14	11254	genome.wustl.edu	36	X	115486270	115486270	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	X	115486270	115486270	G	C	SNP	SLC6A14	NM_007231	human	genbank	54_36p	1	validated	missense	c.323	p.W108S	1	NULL	-	-	no_errors
XIAP	331	genome.wustl.edu	36	X	122847726	122847726	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	X	122847726	122847726	A	G	SNP	XIAP	NM_001167	human	genbank	54_36p	1	reviewed	missense	c.533	p.H178R	0.65	NULL	-	-	no_errors
PRRG3	79057	genome.wustl.edu	36	X	150619956	150619957	+	Frame_Shift_Ins	INS	-	-	T		Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	X	150619956	150619957	-	T	INS	PRRG3	NM_024082	human	genbank	54_36p	1	provisional	frame_shift_ins	c.491_492	p.R166fs	0.269:0.274	NULL	-	-	no_errors
ZNF81	347344	genome.wustl.edu	36	X	47659779	47659779	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	X	47659779	47659779	A	G	SNP	ZNF81	NM_007137	human	genbank	54_36p	1	validated	missense	c.790	p.N264D	0.17	NULL	-	-	no_errors
TAF1	6872	genome.wustl.edu	36	X	70596264	70596264	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	X	70596264	70596264	A	C	SNP	TAF1	NM_004606	human	genbank	54_36p	1	reviewed	missense	c.5262	p.E1754D	1	NULL	Bromodomain;HMMPfam_Bromodomain;TBP-binding;HMMPfam_TBP-binding;TAF(II)230 TBP-binding fragment;superfamily_TAF(II)230 TBP-binding fragment;superfamily_Bromodomain	-	no_errors
CXCR3	2833	genome.wustl.edu	36	X	70754028	70754028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	a68927d4-e827-49c9-9c3a-23ce0543261b	f0b7b00b-78e4-4668-950c-bc311cdc8d97	X	70754028	70754028	C	T	SNP	CXCR3	NM_001504	human	genbank	54_36p	-1	reviewed	missense	c.19	p.D7N		NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors