Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID PRKCI 5584 hgsc.bcm.edu 36 3 171496413 171496413 + Missense_Mutation SNP C C T novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 C C C T C C Unknown Valid Somatic Phase_IV WXS SOLID SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 ARHGEF12 23365 hgsc.bcm.edu 36 11 119841167 119841167 + Silent SNP A A T novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 CASP5 838 hgsc.bcm.edu 36 11 104383251 104383251 + Frame_Shift_Del DEL T T - novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 CLN6 54982 hgsc.bcm.edu 36 15 66293728 66293728 + Frame_Shift_Del DEL T T - novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 CSMD1 64478 hgsc.bcm.edu 36 8 3254406 3254406 + Frame_Shift_Del DEL C C - novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 DGKK 139189 hgsc.bcm.edu 36 X 50184032 50184033 + Frame_Shift_Ins INS - - A novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 hCG_1646420 644672 hgsc.bcm.edu 36 11 113155760 113155761 + Frame_Shift_Ins INS - - G novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 MPPE1 65258 hgsc.bcm.edu 36 18 11876921 11876921 + Nonsense_Mutation SNP G G A novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 NCOR2 9612 hgsc.bcm.edu 36 12 123405987 123405990 + Frame_Shift_Del DEL TGAG TGAG - novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 TGAG TGAG . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 PREX1 57580 hgsc.bcm.edu 36 20 46784490 46784490 + Missense_Mutation SNP C C G novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 PSORS1C1 170679 hgsc.bcm.edu 36 6 31214479 31214480 + Frame_Shift_Ins INS - - C novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 SCN5A 6331 hgsc.bcm.edu 36 3 38570913 38570913 + Frame_Shift_Del DEL G G - novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 CNTNAP5 129684 hgsc.bcm.edu 36 2 124998353 124998353 + Missense_Mutation SNP G G A novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 CUBN 8029 hgsc.bcm.edu 36 10 17007775 17007775 + Silent SNP G G A novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 DKK2 27123 hgsc.bcm.edu 36 4 108065170 108065170 + Silent SNP A A T novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 A A A T A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 DNAH11 8701 hgsc.bcm.edu 36 7 21576352 21576352 + Silent SNP T T C novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 T T T C T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 KCNH5 27133 hgsc.bcm.edu 36 14 62244288 62244288 + Silent SNP C C T novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 MAK16 84549 hgsc.bcm.edu 36 8 33466052 33466052 + Missense_Mutation SNP G G A novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 MDFIC 29969 hgsc.bcm.edu 36 7 114406913 114406913 + Missense_Mutation SNP G G C novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 MUC6 4588 hgsc.bcm.edu 36 11 1007069 1007069 + Missense_Mutation SNP G G A novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 OPCML 4978 hgsc.bcm.edu 36 11 131812378 131812378 + Silent SNP C C T novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 PAH 5053 hgsc.bcm.edu 36 12 101773205 101773205 + Missense_Mutation SNP T T C novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 T T T C T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 PHF20 51230 hgsc.bcm.edu 36 20 33920870 33920870 + Missense_Mutation SNP G G A novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 PRMT5 10419 hgsc.bcm.edu 36 14 22463692 22463692 + Missense_Mutation SNP G G C novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 SFXN4 119559 hgsc.bcm.edu 36 10 120910457 120910457 + Silent SNP G G C novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 SPEF2 79925 hgsc.bcm.edu 36 5 35680326 35680326 + Missense_Mutation SNP A A G novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 TANC2 26115 hgsc.bcm.edu 36 17 58669167 58669167 + Missense_Mutation SNP G G A novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 USP24 23358 hgsc.bcm.edu 36 1 55385220 55385220 + Silent SNP A A C novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 A A A C A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 WEE1 7465 hgsc.bcm.edu 36 11 9555328 9555328 + Silent SNP A A G novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 CCKBR 887 hgsc.bcm.edu 36 11 6247615 6247615 + Missense_Mutation SNP G G T novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 ODZ1 10178 hgsc.bcm.edu 36 X 123615300 123615300 + Missense_Mutation SNP G G A novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 FAT3 120114 hgsc.bcm.edu 36 11 92232077 92232077 + Missense_Mutation SNP A A G novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 A A A G A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 FAT3 120114 hgsc.bcm.edu 36 11 92232098 92232098 + Missense_Mutation SNP A A T novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 A A A T A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 SLCO4C1 353189 hgsc.bcm.edu 36 5 101613318 101613318 + Missense_Mutation SNP C C T novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9 TP53 7157 hgsc.bcm.edu 36 17 7520086 7520086 + Missense_Mutation SNP A A C novel TCGA-13-1407-01A-01W-0490-10 TCGA-13-1407-10A-01W-0491-10 A A C C A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID ab616375-b351-4bbc-9dbb-6eaea4e0b6f7 62823d5e-d091-4ea7-95b2-1f3e0cd201c9