Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error STXBP3 6814 genome.wustl.edu 36 1 109123502 109123502 + Silent SNP G G C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 109123502 109123502 G C SNP STXBP3 NM_007269 human genbank 54_36p 1 validated silent c.756 p.L252 1 NULL - - no_errors UBL4B 164153 genome.wustl.edu 36 1 110456870 110456870 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 110456870 110456870 A G SNP UBL4B NM_203412 human genbank 54_36p 1 validated missense c.191 p.N64S 0.96 NULL - - no_errors KCNA2 3737 genome.wustl.edu 36 1 110948093 110948093 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 110948093 110948093 C G SNP KCNA2 NM_004974 human genbank 54_36p -1 reviewed missense c.835 p.E279Q 1 HMMPfam_Ion_trans HMMPfam_K_tetra;HMMPfam_Ion_trans;superfamily_POZ domain;superfamily_Voltage-gated potassium channels - no_errors CHD1L 9557 genome.wustl.edu 36 1 145233735 145233735 + Splice_Site SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 145233735 145233735 G A SNP CHD1L NM_004284 human genbank 54_36p 1 validated splice_site c.2616-1 e23-1 1 - - - no_errors PAPPA2 60676 genome.wustl.edu 36 1 174931581 174931581 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 174931581 174931581 T G SNP PAPPA2 NM_020318 human genbank 54_36p 1 validated missense c.2709 p.C903W 1 NULL - - no_errors CEP350 9857 genome.wustl.edu 36 1 178328483 178328483 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 178328483 178328483 C G SNP CEP350 NM_014810 human genbank 54_36p 1 reviewed missense c.6617 p.P2206R 0.97 NULL - - no_errors KIF21B 23046 genome.wustl.edu 36 1 199225768 199225768 + Silent SNP G G C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 199225768 199225768 G C SNP KIF21B NM_017596 human genbank 54_36p -1 provisional silent c.3057 p.S1019 0.43 NULL HMMPfam_WD40;HMMPfam_Kinesin;superfamily_Prefoldin;superfamily_WD40 repeat-like;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors ITPKB 3707 genome.wustl.edu 36 1 224896358 224896358 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 224896358 224896358 C T SNP ITPKB NM_002221 human genbank 54_36p -1 reviewed missense c.2338 p.A780T 1 HMMPfam_IPK HMMPfam_IPK;superfamily_SAICAR synthase-like - no_errors TARBP1 6894 genome.wustl.edu 36 1 232620564 232620564 + Silent SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 232620564 232620564 A G SNP TARBP1 NM_005646 human genbank 54_36p -1 reviewed silent c.3594 p.A1198 1 NULL - - no_errors AHCTF1 25909 genome.wustl.edu 36 1 245087640 245087640 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 245087640 245087640 A T SNP AHCTF1 NM_015446 human genbank 54_36p -1 validated missense c.4232 p.L1411H 0.08 NULL - - no_errors SLC9A1 6548 genome.wustl.edu 36 1 27300285 27300285 + Silent SNP G A A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 27300285 27300285 G A SNP SLC9A1 NM_003047 human genbank 54_36p -1 validated silent c.2106 p.G702 1 NULL - - no_errors ARHGEF16 27237 genome.wustl.edu 36 1 3379574 3379574 + Silent SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 3379574 3379574 G A SNP ARHGEF16 NM_014448 human genbank 54_36p 1 reviewed silent c.231 p.E77 0.938 NULL - - no_errors TM2D1 83941 genome.wustl.edu 36 1 61963351 61963351 + Silent SNP A C C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A C C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 61963351 61963351 A C SNP TM2D1 NM_032027 human genbank 54_36p -1 reviewed silent c.30 p.S10 NULL - - no_errors DOCK7 85440 genome.wustl.edu 36 1 62892020 62892020 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 1 62892020 62892020 C G SNP DOCK7 NM_033407 human genbank 54_36p -1 validated missense c.353 p.R118T 1 NULL HMMPfam_Ded_cyto;superfamily_ARM repeat - no_errors SFXN3 81855 genome.wustl.edu 36 10 102786216 102786231 + Splice_Site DEL GGCTTTTCCACCCACA GGCTTTTCCACCCACA - novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 GGCTTTTCCACCCACA GGCTTTTCCACCCACA GGCTTTTCCACCCACA - GGCTTTTCCACCCACA GGCTTTTCCACCCACA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 10 102786216 102786231 GGCTTTTCCACCCACA - DEL SFXN3 NM_030971 human genbank 54_36p 1 validated splice_site_del c.NULL e5-2 0.195:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.066:0.543:0.964:0.983:0.997:1.000 - - (deletion:intron[102785849;102786232]) no_errors BTRC 8945 genome.wustl.edu 36 10 103211767 103211767 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 10 103211767 103211767 C T SNP BTRC NM_033637 human genbank 54_36p 1 reviewed missense c.196 p.P66S 1 NULL HMMPfam_WD40;HMMPfam_F-box;superfamily_WD40 repeat-like;superfamily_F-box domain - no_errors MGEA5 10724 genome.wustl.edu 36 10 103536257 103536257 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 10 103536257 103536257 C A SNP MGEA5 NM_012215 human genbank 54_36p -1 validated nonsense c.2692 p.E898* 1 NULL - - no_errors MYST4 23522 genome.wustl.edu 36 10 76458706 76458706 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 10 76458706 76458706 A G SNP MYST4 NM_012330 human genbank 54_36p 1 validated missense c.4118 p.E1373G 1 NULL "PHD;HMMPfam_PHD;MOZ_SAS;HMMPfam_MOZ_SAS;FYVE/PHD zinc finger;superfamily_FYVE/PHD zinc finger;""Winged helix"" DNA-binding domain;superfamily_""Winged helix"" DNA-binding domain;Acyl-CoA N-acyltransferases (Nat);superfamily_Acyl-CoA N-acyltransferases (Nat)" - no_errors SORL1 6653 genome.wustl.edu 36 11 120896761 120896761 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 11 120896761 120896761 A G SNP SORL1 NM_003105 human genbank 54_36p 1 reviewed missense c.1397 p.N466S 1 NULL HMMPfam_Ldl_recept_b;HMMPfam_Ldl_recept_a;HMMPfam_BNR;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase;superfamily_EGF/Laminin;superfamily_LDL receptor-like module;superfamily_YWTD domain - no_errors CCKBR 887 genome.wustl.edu 36 11 6248984 6248984 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 11 6248984 6248984 G C SNP CCKBR NM_176875 human genbank 54_36p 1 reviewed missense c.979 p.A327P 1 HMMPfam_7tm_1 HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like - no_errors MYO7A 4647 genome.wustl.edu 36 11 76591795 76591795 + Missense_Mutation SNP G G C Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 11 76591795 76591795 G C SNP MYO7A NM_000260 human genbank 54_36p 1 reviewed missense c.5097 p.K1699N 0.996 NULL - - no_errors STK33 65975 genome.wustl.edu 36 11 8442866 8442866 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 11 8442866 8442866 G A SNP STK33 NM_030906 human genbank 54_36p -1 validated missense c.419 p.T140M 0.75 HMMPfam_Pkinase HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like) - no_errors C12orf42 374470 genome.wustl.edu 36 12 102220460 102220460 + Silent SNP G A A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 12 102220460 102220460 G A SNP C12orf42 NM_001099336 human genbank 54_36p -1 validated silent c.639 p.A213 NULL - - no_errors NAA25 80018 genome.wustl.edu 36 12 111000884 111000884 + Silent SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 12 111000884 111000884 C T SNP C12orf30 NM_024953 human genbank 54_36p -1 validated silent c.522 p.L174 1 NULL - - no_errors LOC643668 643668 genome.wustl.edu 36 12 18738165 18738165 + RNA SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 12 18738165 18738165 G A SNP LOC643668 XR_016986 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene CACNA1C 775 genome.wustl.edu 36 12 2658874 2658874 + Missense_Mutation SNP G G T Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 12 2658874 2658874 G T SNP CACNA1C NM_000719 human genbank 54_36p 1 reviewed missense c.5095 p.A1699S 0.998 NULL HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_EF-hand,superfamily_Voltage-gated potassium channels - no_errors KIF21A 55605 genome.wustl.edu 36 12 38012445 38012445 + Silent SNP T T C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 12 38012445 38012445 T C SNP KIF21A NM_017641 human genbank 54_36p -1 validated silent c.2850 p.K950 0.89 NULL - - no_errors BIN2 51411 genome.wustl.edu 36 12 49982775 49982775 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 12 49982775 49982775 C T SNP BIN2 NM_016293 human genbank 54_36p -1 validated missense c.274 p.E92K 1 HMMPfam_BAR HMMPfam_BAR - no_errors DGKA 1606 genome.wustl.edu 36 12 54633437 54633437 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 12 54633437 54633437 A T SNP DGKA NM_001345 human genbank 54_36p 1 reviewed missense c.2100 p.E700D 1 HMMPfam_DAGK_acc HMMPfam_DAGK_acc;HMMPfam_DAGK_cat;HMMPfam_efhand;HMMPfam_C1_1;superfamily_EF-hand;superfamily_Cysteine-rich domain - no_errors THAP2 83591 genome.wustl.edu 36 12 70344567 70344567 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 12 70344567 70344567 A G SNP THAP2 NM_031435 human genbank 54_36p 1 provisional missense c.11 p.N4S 1 NULL - - no_errors SLC15A1 6564 genome.wustl.edu 36 13 98158993 98158993 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 13 98158993 98158993 A G SNP SLC15A1 NM_005073 human genbank 54_36p -1 validated missense c.1097 p.V366A 1 NULL - - no_errors RAGE 5891 genome.wustl.edu 36 14 101765638 101765638 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 14 101765638 101765638 G C SNP RAGE NM_014226 human genbank 54_36p -1 provisional missense c.1091 p.S364C 1 NULL - - no_errors RNASE11 122651 genome.wustl.edu 36 14 20121957 20121957 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 14 20121957 20121957 T A SNP RNASE11 NM_145250 human genbank 54_36p -1 validated missense c.517 p.S173C NULL superfamily_RNase A-like - no_errors PABPN1 8106 genome.wustl.edu 36 14 22863304 22863304 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 14 22863304 22863304 G A SNP PABPN1 NM_004643 human genbank 54_36p 1 reviewed missense c.847 p.G283S 1 NULL - - no_errors SYNE2 23224 genome.wustl.edu 36 14 63750739 63750739 + Silent SNP T T G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 14 63750739 63750739 T G SNP SYNE2 NM_182914 human genbank 54_36p 1 validated silent c.19131 p.S6377 0.04 NULL - - no_errors CILP 8483 genome.wustl.edu 36 15 63286375 63286375 + Silent SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 15 63286375 63286375 C A SNP CILP NM_003613 human genbank 54_36p -1 reviewed silent c.222 p.L74 1 NULL HMMPfam_TSP_1,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_TSP-1 type 1 repeat - no_errors ABCC1 4363 genome.wustl.edu 36 16 16080820 16080820 + Missense_Mutation SNP G G C Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 16 16080820 16080820 G C SNP ABCC1 NM_004996 human genbank 54_36p 1 reviewed missense c.2099 p.G700A 0.999 HMMPfam_ABC_tran HMMPfam_ABC_membrane,HMMPfam_ABC_tran,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain - no_errors MYLK3 91807 genome.wustl.edu 36 16 45304156 45304156 + Silent SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 16 45304156 45304156 G A SNP MYLK3 NM_182493 human genbank 54_36p -1 validated silent c.2019 p.F673 1 NULL - - no_errors LOC100131582 100131582 genome.wustl.edu 36 16 644991 644991 + Missense_Mutation SNP C T T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 16 644991 644991 C T SNP LOC100131582 XM_001720183 human genbank 54_36p -1 model missense c.443 p.S148N 0.004 NULL - - no_errors FZD2 2535 genome.wustl.edu 36 17 39992127 39992127 + Silent SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 17 39992127 39992127 G A SNP FZD2 NM_001466 human genbank 54_36p 1 reviewed silent c.1545 p.S515 0.998 HMMPfam_Frizzled HMMPfam_Fz,HMMPfam_Frizzled,superfamily_Frizzled cysteine-rich domain - no_errors USP6 9098 genome.wustl.edu 36 17 4976318 4976318 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 17 4976318 4976318 A T SNP USP6 ENST00000396805 human ensembl 54_36p 1 known missense c.242 p.D81V 0.9 NULL - - no_errors PITPNM3 83394 genome.wustl.edu 36 17 6312289 6312289 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 17 6312289 6312289 G A SNP PITPNM3 NM_031220 human genbank 54_36p -1 validated missense c.1870 p.R624W 1 NULL - - no_errors SDK2 54549 genome.wustl.edu 36 17 68922422 68922422 + Missense_Mutation SNP C T T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 17 68922422 68922422 C T SNP SDK2 ENST00000334543 human ensembl 54_36p -1 known missense c.1477 p.A493T 0.99 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7518937 7518937 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 17 7518937 7518937 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed nonsense c.637 p.R213* 0.38 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors RIOK3 8780 genome.wustl.edu 36 18 19313300 19313300 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 18 19313300 19313300 A C SNP RIOK3 NM_003831 human genbank 54_36p 1 reviewed missense c.1366 p.K456Q 0.3 HMMPfam_RIO1 HMMPfam_RIO1;superfamily_Protein kinase-like (PK-like) - no_errors ZNF521 25925 genome.wustl.edu 36 18 21060155 21060155 + Silent SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 18 21060155 21060155 A T SNP ZNF521 NM_015461 human genbank 54_36p -1 validated silent c.1725 p.L575 0.96 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors RGL3 57139 genome.wustl.edu 36 19 11387798 11387798 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 19 11387798 11387798 C T SNP RGL3 NM_001035223 human genbank 54_36p -1 provisional nonsense c.452 p.W151* 1 HMMPfam_RasGEF_N HMMPfam_RA;HMMPfam_RasGEF_N;HMMPfam_RasGEF;superfamily_Ras GEF;superfamily_Ubiquitin-like - no_errors EMR2 30817 genome.wustl.edu 36 19 14723306 14723306 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 19 14723306 14723306 C A SNP EMR2 NM_013447 human genbank 54_36p -1 reviewed missense c.1966 p.A656S 0.85 HMMPfam_7tm_2 HMMPfam_GPS;HMMPfam_7tm_2;HMMPfam_EGF_CA;superfamily_EGF/Laminin;superfamily_Family A G protein-coupled receptor-like - no_errors IRGC 56269 genome.wustl.edu 36 19 48914940 48914940 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 19 48914940 48914940 C A SNP IRGC NM_019612 human genbank 54_36p 1 validated missense c.390 p.D130E 0.01 NULL - - no_errors BCAT2 587 genome.wustl.edu 36 19 54001641 54001641 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 19 54001641 54001641 G T SNP BCAT2 NM_001190 human genbank 54_36p -1 validated missense c.245 p.P82H 1 HMMPfam_Aminotran_4 HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes - no_errors RCN3 57333 genome.wustl.edu 36 19 54729337 54729337 + Silent SNP C C T Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 19 54729337 54729337 C T SNP RCN3 NM_020650 human genbank 54_36p 1 provisional silent c.318 p.I106 0.996 NULL - - no_errors OR7G1 125962 genome.wustl.edu 36 19 9086597 9086597 + Silent SNP G G T Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 19 9086597 9086597 G T SNP OR7G1 NM_001005192 human genbank 54_36p -1 provisional silent c.843 p.V281 0.473 NULL - - no_errors EPC2 26122 genome.wustl.edu 36 2 149255757 149255757 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 149255757 149255757 G T SNP EPC2 NM_015630 human genbank 54_36p 1 validated missense c.1663 p.A555S 1 HMMPfam_E_Pc_C HMMPfam_E_Pc_C - no_errors NEB 4703 genome.wustl.edu 36 2 152055155 152055155 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 152055155 152055155 C T SNP NEB NM_004543 human genbank 54_36p -1 reviewed missense c.19706 p.G6569E 0.99 NULL - - no_errors TTN 7273 genome.wustl.edu 36 2 179285426 179285426 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 179285426 179285426 C G SNP TTN NM_133378 human genbank 54_36p -1 reviewed missense c.23736 p.Q7912H 1 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region DUSP19 142679 genome.wustl.edu 36 2 183668509 183668509 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 183668509 183668509 T C SNP DUSP19 NM_080876 human genbank 54_36p 1 validated missense c.532 p.S178P 1 HMMPfam_DSPc HMMPfam_DSPc;superfamily_(Phosphotyrosine protein) phosphatases II - no_errors ZNF804A 91752 genome.wustl.edu 36 2 185508899 185508899 + Silent SNP T T A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 185508899 185508899 T A SNP ZNF804A NM_194250 human genbank 54_36p 1 provisional silent c.531 p.T177 NULL - - no_errors COL5A2 1290 genome.wustl.edu 36 2 189607183 189607183 + Missense_Mutation SNP C C T Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 189607183 189607183 C T SNP COL5A2 NM_000393 human genbank 54_36p -1 reviewed missense c.4358 p.R1453Q 1 NULL - - no_errors KRT18P19 339781 genome.wustl.edu 36 2 189885098 189885098 + RNA SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 189885098 189885098 A T SNP KRT18P19 XR_016833 human genbank 54_36p -1 model rna NULL NULL 0.98 - - - pseudogene AOX1 316 genome.wustl.edu 36 2 201182370 201182370 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 201182370 201182370 T G SNP AOX1 NM_001159 human genbank 54_36p 1 reviewed missense c.1141 p.L381V HMMPfam_FAD_binding_5 HMMPfam_Fer2;superfamily_2Fe-2S ferredoxin-like;HMMPfam_FAD_binding_5;HMMPfam_Fer2_2;superfamily_CO dehydrogenase ISP C-domain like;HMMPfam_CO_deh_flav_C;superfamily_CO dehydrogenase flavoprotein C-terminal domain-like;HMMPfam_Ald_Xan_dh_C2;superfamily_Molybdenum cofactor-binding domain;superfamily_FAD-binding domain;HMMPfam_Ald_Xan_dh_C;superfamily_CO dehydrogenase molybdoprotein N-domain-like - no_errors LOC402116 402116 genome.wustl.edu 36 2 209753507 209753507 + RNA SNP G G C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 209753507 209753507 G C SNP LOC402116 XR_017081 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene TUBA4A 7277 genome.wustl.edu 36 2 219824013 219824013 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 219824013 219824013 C G SNP TUBA4A NM_006000 human genbank 54_36p -1 reviewed missense c.652 p.D218H 1 HMMPfam_Tubulin HMMPfam_Tubulin;HMMPfam_Tubulin_C;superfamily_Tubulin nucleotide-binding domain-like;superfamily_Tubulin C-terminal domain-like - no_errors UGT1A10 54575 genome.wustl.edu 36 2 234210018 234210018 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 234210018 234210018 C G SNP UGT1A10 NM_019075 human genbank 54_36p 1 reviewed missense c.111 p.H37Q 1 NULL - - no_errors MFSD2B 388931 genome.wustl.edu 36 2 24098077 24098077 + Missense_Mutation SNP T T A Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T A T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 24098077 24098077 T A SNP LOC388931 NM_001080473 human genbank 54_36p 1 predicted missense c.737 p.I246N 0.036 NULL - - no_errors ADI1 55256 genome.wustl.edu 36 2 3481851 3481851 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 3481851 3481851 T C SNP ADI1 NM_018269 human genbank 54_36p -1 reviewed missense c.430 p.K144E 1 NULL - - no_errors PRKCE 5581 genome.wustl.edu 36 2 46059636 46059636 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 46059636 46059636 A C SNP PRKCE NM_005400 human genbank 54_36p 1 reviewed missense c.590 p.Q197P 1 HMMPfam_C1_1 C2;HMMPfam_C2;Pkinase;HMMPfam_Pkinase;Pkinase_C;HMMPfam_Pkinase_C;C1_1;HMMPfam_C1_1 - no_errors EFEMP1 2202 genome.wustl.edu 36 2 55998858 55998858 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 55998858 55998858 C A SNP EFEMP1 NM_001039348 human genbank 54_36p -1 reviewed missense c.130 p.D44Y 1 HMMPfam_EGF_CA HMMPfam_EGF_CA;superfamily_EGF/Laminin - no_errors ENSG00000144188 0 genome.wustl.edu 36 2 97055666 97055666 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 2 97055666 97055666 A T SNP ENSG00000144188 ENST00000272598 human ensembl 54_36p -1 known missense c.1111 p.F371I 0 NULL - - no_errors RALGAPA2 57186 genome.wustl.edu 36 20 20533856 20533856 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 20 20533856 20533856 T A SNP C20orf74 NM_020343 human genbank 54_36p -1 validated missense c.2001 p.K667N 1 NULL HMMPfam_Rap_GAP;superfamily_Rap/Ran-GAP (Pfam 02145);superfamily_ARM repeat - no_errors ZMYND8 23613 genome.wustl.edu 36 20 45324569 45324569 + Silent SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 20 45324569 45324569 G A SNP ZMYND8 NM_183047 human genbank 54_36p -1 reviewed silent c.1491 p.A497 0.99 NULL HMMPfam_PWWP;HMMPfam_Bromodomain;HMMPfam_PHD;HMMPfam_zf-MYND;superfamily_FYVE/PHD zinc finger;superfamily_Bromodomain;superfamily_Tudor/PWWP/MBT - no_errors IGL@ 3535 genome.wustl.edu 36 22 21465262 21465262 + Missense_Mutation SNP A T T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A T T A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 22 21465262 21465262 A T SNP IGL@ ENST00000390314 human ensembl 54_36p 1 known missense c.124 p.T42S 0.01 NULL - - no_stop_codon SGSM3 27352 genome.wustl.edu 36 22 39135225 39135225 + Missense_Mutation SNP G C C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 22 39135225 39135225 G C SNP SGSM3 NM_015705 human genbank 54_36p 1 validated missense c.2014 p.E672Q 1 NULL - - no_errors PLXNB2 23654 genome.wustl.edu 36 22 49063643 49063643 + Missense_Mutation SNP C A A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 22 49063643 49063643 C A SNP PLXNB2 NM_012401 human genbank 54_36p -1 validated missense c.2779 p.D927Y 0.722 NULL - - no_errors IFT57 55081 genome.wustl.edu 36 3 109415503 109415503 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 3 109415503 109415503 C T SNP IFT57 NM_018010 human genbank 54_36p -1 validated missense c.550 p.E184K 1 NULL - - no_errors MYLK 4638 genome.wustl.edu 36 3 124909399 124909399 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 3 124909399 124909399 A T SNP MYLK NM_053025 human genbank 54_36p -1 reviewed missense c.2282 p.L761H 0.04 HMMPfam_I-set HMMPfam_Pkinase;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_Protein kinase-like (PK-like);HMMPfam_I-set;superfamily_Immunoglobulin - no_errors SLC12A8 84561 genome.wustl.edu 36 3 126392010 126392010 + Missense_Mutation SNP T G G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T G G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 3 126392010 126392010 T G SNP SLC12A8 NM_024628 human genbank 54_36p -1 validated missense c.97 p.M33L 1 NULL - - no_errors LOC389168 389168 genome.wustl.edu 36 3 157187939 157187939 + RNA SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 3 157187939 157187939 A T SNP LOC389168 XR_017613 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene KCNAB1 7881 genome.wustl.edu 36 3 157321283 157321283 + Silent SNP G G T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 3 157321283 157321283 G T SNP KCNAB1 NM_172160 human genbank 54_36p 1 reviewed silent c.189 p.L63 0.98 NULL HMMPfam_Aldo_ket_red;superfamily_NAD(P)-linked oxidoreductase - no_errors SLC7A14 57709 genome.wustl.edu 36 3 171727348 171727348 + Silent SNP G G T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 3 171727348 171727348 G T SNP SLC7A14 NM_020949 human genbank 54_36p -1 validated silent c.72 p.S24 1 NULL HMMPfam_AA_permease - no_errors CCDC39 339829 genome.wustl.edu 36 3 181860218 181860218 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 3 181860218 181860218 C A SNP CCDC39 NM_181426 human genbank 54_36p -1 validated nonsense c.550 p.E184* 1 NULL - - no_errors ATP11B 23200 genome.wustl.edu 36 3 184066902 184066902 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 3 184066902 184066902 G T SNP ATP11B NM_014616 human genbank 54_36p 1 validated missense c.1596 p.K532N 1 NULL - - no_errors CRELD1 78987 genome.wustl.edu 36 3 9960176 9960176 + Missense_Mutation SNP T T A Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T A T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 3 9960176 9960176 T A SNP CRELD1 NM_001031717 human genbank 54_36p 1 validated missense c.1025 p.I342N 0.995 NULL - - no_errors CTBP1 1487 genome.wustl.edu 36 4 1197364 1197364 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 4 1197364 1197364 G T SNP CTBP1 NM_001328 human genbank 54_36p -1 reviewed missense c.923 p.P308H 1 HMMPfam_2-Hacid_dh:HMMPfam_2-Hacid_dh_C HMMPfam_2-Hacid_dh;HMMPfam_2-Hacid_dh_C;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_Formate/glycerate dehydrogenase catalytic domain-like - no_errors LRBA 987 genome.wustl.edu 36 4 151490617 151490617 + Missense_Mutation SNP T C C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 4 151490617 151490617 T C SNP LRBA NM_006726 human genbank 54_36p -1 validated missense c.7372 p.I2458V 1 HMMPfam_Beach HMMPfam_Beach;HMMPfam_WD40;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_DUF1088;superfamily_WD40 repeat-like;superfamily_ARM repeat;superfamily_PH domain-like;superfamily_BEACH domain - no_errors POLR2B 5431 genome.wustl.edu 36 4 57578609 57578609 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 4 57578609 57578609 A T SNP POLR2B NM_000938 human genbank 54_36p 1 reviewed missense c.2281 p.T761S 1 HMMPfam_RNA_pol_Rpb2_6 HMMPfam_RNA_pol_Rpb2_6;HMMPfam_RNA_pol_Rpb2_7;HMMPfam_RNA_pol_Rpb2_2;HMMPfam_RNA_pol_Rpb2_1;HMMPfam_RNA_pol_Rpb2_3;HMMPfam_RNA_pol_Rpb2_4;HMMPfam_RNA_pol_Rpb2_5;superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase - no_errors UGT2B17 7367 genome.wustl.edu 36 4 69116210 69116210 + Silent SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 4 69116210 69116210 A G SNP UGT2B17 NM_001077 human genbank 54_36p -1 provisional silent c.588 p.P196 0.96 HMMPfam_UDPGT HMMPfam_UDPGT;superfamily_UDP-Glycosyltransferase/glycogen phosphorylase - no_errors SORCS2 57537 genome.wustl.edu 36 4 7756820 7756820 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 4 7756820 7756820 G A SNP SORCS2 NM_020777 human genbank 54_36p 1 reviewed missense c.1327 p.G443S 1 HMMPfam_BNR HMMPfam_PKD,superfamily_PKD domain,HMMPfam_BNR,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase - no_errors FAM35B2 439965 genome.wustl.edu 36 10 46836889 46836889 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 10 46836889 46836889 G C SNP FAM35B2 ENST00000342900 human ensembl 54_36p 1 known missense c.1381 p.D461H 0.4 NULL - - no_start_codon OR4C2P 119750 genome.wustl.edu 36 11 48398865 48398865 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 11 48398865 48398865 C T SNP OR4C2P ENST00000330155 human ensembl 54_36p 1 known missense c.494 p.P165L 0.68 NULL HMMPfam_7tm_1;superfamily_SSF81321 - no_errors CTNND2 1501 genome.wustl.edu 36 5 11450167 11450167 + Silent SNP T T C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 5 11450167 11450167 T C SNP CTNND2 NM_001332 human genbank 54_36p -1 validated silent c.588 p.R196 1 NULL HMMPfam_Arm;superfamily_ARM repeat - no_errors CDH6 1004 genome.wustl.edu 36 5 31303462 31303462 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 5 31303462 31303462 G C SNP CDH6 NM_004932 human genbank 54_36p 1 reviewed missense c.125 p.G42A 1 NULL HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors EGFLAM 133584 genome.wustl.edu 36 5 38474280 38474280 + Silent SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 5 38474280 38474280 C T SNP EGFLAM NM_152403 human genbank 54_36p 1 validated silent c.2430 p.C810 1 HMMPfam_EGF HMMPfam_fn3;HMMPfam_EGF;superfamily_Fibronectin type III;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_1;HMMPfam_Laminin_G_2 - no_errors CD180 4064 genome.wustl.edu 36 5 66516124 66516124 + Silent SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 5 66516124 66516124 A G SNP CD180 NM_005582 human genbank 54_36p -1 validated silent c.303 p.H101 NULL - - no_errors CMYA5 202333 genome.wustl.edu 36 5 79064909 79064909 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 5 79064909 79064909 T G SNP CMYA5 NM_153610 human genbank 54_36p 1 validated missense c.4565 p.V1522G NULL HMMPfam_SPRY;HMMPfam_fn3;superfamily_Fibronectin type III - no_errors CHD1 1105 genome.wustl.edu 36 5 98264662 98264662 + Missense_Mutation SNP C A A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 5 98264662 98264662 C A SNP CHD1 NM_001270 human genbank 54_36p -1 reviewed missense c.612 p.K204N 0.99 NULL - - no_errors LOC100128140 100128140 genome.wustl.edu 36 17 507347 507347 + RNA SNP T T C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 17 507347 507347 T C SNP LOC100128140 XR_037026 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene ENSG00000210211 0 genome.wustl.edu 36 9 5880215 5880215 + RNA SNP C C G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 9 5880215 5880215 C G SNP ENSG00000210211 ENST00000387476 human ensembl 54_36p 1 novel rna NULL NULL 0.001 - - - pseudogene PTPRK 5796 genome.wustl.edu 36 6 128339552 128339552 + Silent SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 6 128339552 128339552 A T SNP PTPRK NM_002844 human genbank 54_36p -1 validated silent c.3912 p.S1304 1 HMMPfam_Y_phosphatase superfamily_Fibronectin type III;superfamily_Immunoglobulin;superfamily_(Phosphotyrosine protein) phosphatases II;HMMPfam_Y_phosphatase;HMMPfam_MAM;HMMPfam_fn3;HMMPfam_ig - no_errors LOC643778 643778 genome.wustl.edu 36 6 129521075 129521075 + RNA SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 6 129521075 129521075 A G SNP LOC643778 XR_017181 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene EHMT2 10919 genome.wustl.edu 36 6 31972245 31972245 + Missense_Mutation SNP G A A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G A A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 6 31972245 31972245 G A SNP EHMT2 NM_006709 human genbank 54_36p -1 reviewed missense c.356 p.S119F 1 NULL HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_Pre-SET;superfamily_RING/U-box;superfamily_SET domain;HMMPfam_SET - no_errors ETV7 51513 genome.wustl.edu 36 6 36451665 36451665 + Missense_Mutation SNP G T T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 6 36451665 36451665 G T SNP ETV7 NM_016135 human genbank 54_36p -1 provisional missense c.268 p.L90I 1 NULL - - no_errors PTCRA 171558 genome.wustl.edu 36 6 42998844 42998844 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 6 42998844 42998844 C A SNP PTCRA NM_138296 human genbank 54_36p 1 validated missense c.160 p.P54T 0.02 NULL superfamily_Immunoglobulin - no_errors RIMS1 22999 genome.wustl.edu 36 6 73032412 73032412 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 6 73032412 73032412 A T SNP RIMS1 NM_014989 human genbank 54_36p 1 validated missense c.3337 p.R1113W 1 NULL HMMPfam_C2,HMMPfam_PDZ,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger - no_errors ST7 7982 genome.wustl.edu 36 7 116561414 116561414 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 7 116561414 116561414 A T SNP ST7 NM_021908 human genbank 54_36p 1 reviewed missense c.642 p.E214D 1 HMMPfam_ST7 ST7;HMMPfam_ST7;TPR-like;superfamily_TPR-like - no_errors IQUB 154865 genome.wustl.edu 36 7 122939603 122939603 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 7 122939603 122939603 C A SNP IQUB NM_178827 human genbank 54_36p -1 validated missense c.28 p.A10S NULL - - no_errors GALNTL5 168391 genome.wustl.edu 36 7 151342712 151342712 + Silent SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 7 151342712 151342712 A G SNP GALNTL5 NM_145292 human genbank 54_36p 1 provisional silent c.1077 p.G359 1 NULL HMMPfam_Glycos_transf_2;superfamily_Nucleotide-diphospho-sugar transferases - no_errors STK31 56164 genome.wustl.edu 36 7 23777191 23777191 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 7 23777191 23777191 A G SNP STK31 NM_031414 human genbank 54_36p 1 reviewed missense c.1756 p.S586G 0.99 NULL HMMPfam_Pkinase;HMMPfam_TUDOR;superfamily_Protein kinase-like (PK-like);superfamily_Staphylococcal nuclease;superfamily_Tudor/PWWP/MBT - no_errors C7orf57 136288 genome.wustl.edu 36 7 48047516 48047516 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 7 48047516 48047516 C T SNP C7orf57 NM_001100159 human genbank 54_36p 1 validated missense c.116 p.S39F 0.94 NULL - - no_errors AKAP9 10142 genome.wustl.edu 36 7 91560442 91560442 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 7 91560442 91560442 G T SNP AKAP9 NM_005751 human genbank 54_36p 1 reviewed nonsense c.9454 p.E3152* 1 NULL - - no_errors ZSCAN21 7589 genome.wustl.edu 36 7 99499348 99499348 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 7 99499348 99499348 T A SNP ZSCAN21 NM_145914 human genbank 54_36p 1 validated missense c.594 p.D198E 0.28 NULL HMMPfam_SCAN;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors HAS2 3037 genome.wustl.edu 36 8 122710346 122710346 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 8 122710346 122710346 C A SNP HAS2 NM_005328 human genbank 54_36p -1 reviewed missense c.416 p.G139V 1 NULL HMMPfam_Glycos_transf_2;superfamily_Nucleotide-diphospho-sugar transferases - no_errors RAPGEF1 2889 genome.wustl.edu 36 9 133454022 133454022 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 9 133454022 133454022 C A SNP RAPGEF1 NM_198679 human genbank 54_36p -1 reviewed missense c.2536 p.G846W 0.997 NULL RasGEF_N,HMMPfam_RasGEF_N,RasGEF,HMMPfam_RasGEF - no_errors C9orf79 286234 genome.wustl.edu 36 9 89690173 89690173 + Silent SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 9 89690173 89690173 C A SNP C9orf79 NM_178828 human genbank 54_36p 1 validated silent c.951 p.G317 NULL - - no_errors IPPK 64768 genome.wustl.edu 36 9 94440220 94440220 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 9 94440220 94440220 C T SNP IPPK NM_022755 human genbank 54_36p -1 validated missense c.800 p.R267Q 0.06 HMMPfam_DUF941 HMMPfam_DUF941 - no_errors MUM1L1 139221 genome.wustl.edu 36 X 105337315 105337315 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a X 105337315 105337315 A T SNP MUM1L1 ENST00000337685 human ensembl 54_36p 1 known missense c.1234 p.S412C 1 NULL superfamily_SSF63748 - no_errors GPR101 83550 genome.wustl.edu 36 X 135941269 135941269 + Missense_Mutation SNP G C C novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a X 135941269 135941269 G C SNP GPR101 NM_054021 human genbank 54_36p -1 provisional missense c.231 p.D77E 1 HMMPfam_7tm_1 HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like - no_errors MAGEB5 347541 genome.wustl.edu 36 X 26145962 26145962 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a X 26145962 26145962 C A SNP MAGEB5 XM_293407 human genbank 54_36p 1 model missense c.899 p.A300D 0.01 NULL - - no_errors HUWE1 10075 genome.wustl.edu 36 X 53594876 53594876 + Splice_Site SNP C C A novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a X 53594876 53594876 C A SNP HUWE1 NM_031407 human genbank 54_36p -1 validated splice_site c.9097-1 e62-1 1 - - - no_errors PRSS27 83886 genome.wustl.edu 36 16 2704190 2704191 + Nonsense_Mutation DNP CC CC AG novel Unknown TCGA-13-0887-01A-01W-0421-09 TCGA-13-0887-10A-01W-0421-09 CC CC CC AG CC CC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e05146f2-688d-416b-a992-e2c7a2b7b244 a7b1690e-9c43-4c92-b1a8-6e1c488da73a 16 2704190 2704191 CC AG DNP PRSS27 NM_031948 human genbank 54_36p -1 validated nonsense c.385_384 p.EL129* 0.985:0.986 superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER - no_errors