Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error MNDA 4332 genome.wustl.edu 36 1 157078761 157078761 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 1 157078761 157078761 T G SNP MNDA NM_002432 human genbank 54_36p 1 reviewed missense c.194 p.L65R HMMPfam_PAAD_DAPIN HMMPfam_PAAD_DAPIN;HMMPfam_HIN - no_errors UBXN10 127733 genome.wustl.edu 36 1 20389680 20389680 + Silent SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 1 20389680 20389680 G A SNP UBXN10 NM_152376 human genbank 54_36p 1 provisional silent c.39 p.E13 NULL - - no_errors RGS7 6000 genome.wustl.edu 36 1 239099994 239099994 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 1 239099994 239099994 A T SNP RGS7 NM_002924 human genbank 54_36p -1 validated missense c.434 p.L145H 1 NULL "HMMPfam_RGS;HMMPfam_DEP;HMMPfam_G-gamma;superfamily_""Winged helix"" DNA-binding domain;superfamily_Regulator of G-protein signaling RGS;superfamily_Transducin (heterotrimeric G protein) gamma chain" - no_errors TP73 7161 genome.wustl.edu 36 1 3614185 3614185 + Missense_Mutation SNP G G T Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 1 3614185 3614185 G T SNP TP73 NM_005427 human genbank 54_36p 1 reviewed missense c.399 p.Q133H 1 HMMPfam_P53 superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMPfam_P53,superfamily_Glycosyl hydrolase domain - no_errors MAST2 23139 genome.wustl.edu 36 1 46267163 46267163 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 1 46267163 46267163 C T SNP MAST2 NM_015112 human genbank 54_36p 1 validated missense c.2189 p.P730L 1 NULL - - no_errors CCDC3 83643 genome.wustl.edu 36 10 12980651 12980651 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 10 12980651 12980651 T A SNP CCDC3 NM_031455 human genbank 54_36p -1 validated missense c.584 p.E195V 1 NULL superfamily_Lissencephaly-1 protein (Lis-1 PAF-AH alpha) N-terminal domain - no_errors OR10G7 390265 genome.wustl.edu 36 11 123414884 123414884 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 11 123414884 123414884 A T SNP OR10G7 NM_001004463 human genbank 54_36p -1 provisional missense c.35 p.L12H 0.95 NULL - - no_errors OR8B8 26493 genome.wustl.edu 36 11 123815699 123815699 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 11 123815699 123815699 C G SNP OR8B8 NM_012378 human genbank 54_36p -1 provisional missense c.493 p.G165R NULL - - no_errors CDON 50937 genome.wustl.edu 36 11 125379068 125379068 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 11 125379068 125379068 C A SNP CDON NM_016952 human genbank 54_36p -1 validated missense c.1965 p.M655I 1 HMMPfam_fn3 HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;HMMPfam_ig;superfamily_Immunoglobulin - no_errors CYP2R1 120227 genome.wustl.edu 36 11 14858846 14858846 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 11 14858846 14858846 G A SNP CYP2R1 NM_024514 human genbank 54_36p -1 reviewed nonsense c.412 p.R138* 1 HMMPfam_p450 HMMPfam_p450;superfamily_Cytochrome P450 - no_errors OR5D14 219436 genome.wustl.edu 36 11 55319848 55319848 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 11 55319848 55319848 C A SNP OR5D14 NM_001004735 human genbank 54_36p 1 provisional missense c.241 p.P81T 0.64 NULL - - no_errors FOLH1B 219595 genome.wustl.edu 36 11 89053438 89053438 + Silent SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 11 89053438 89053438 G A SNP PSMAL NM_153696 human genbank 54_36p 1 predicted silent c.462 p.L154 1 NULL HMMPfam_TFR_dimer;HMMPfam_Peptidase_M28;superfamily_Transferrin receptor ectodomain C-terminal domain;superfamily_Zn-dependent exopeptidases - no_errors ATF7 11016 genome.wustl.edu 36 12 52217576 52217576 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 12 52217576 52217576 G C SNP ATF7 NM_006856 human genbank 54_36p -1 validated missense c.292 p.L98V 1 NULL - - no_errors NBEA 26960 genome.wustl.edu 36 13 34633998 34633998 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 13 34633998 34633998 C T SNP NBEA NM_015678 human genbank 54_36p 1 reviewed missense c.3973 p.R1325W 1 NULL HMMPfam_Beach;HMMPfam_WD40;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_DUF1088;superfamily_WD40 repeat-like;superfamily_ARM repeat;superfamily_PH domain-like;superfamily_BEACH domain - no_errors INTS6 26512 genome.wustl.edu 36 13 50841316 50841317 + Missense_Mutation DNP CC CC TT novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 CC CC CC TT CC CC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 13 50841316 50841317 CC TT DNP INTS6 NM_012141 human genbank 54_36p -1 reviewed missense c.2236_2235 p.E746K 0.994:0.986 NULL superfamily_vWA-like - no_errors CLDN10 9071 genome.wustl.edu 36 13 94884273 94884273 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 13 94884273 94884273 G T SNP CLDN10 NM_182848 human genbank 54_36p 1 reviewed missense c.185 p.R62L 1 NULL - - no_errors DHRS7 51635 genome.wustl.edu 36 14 59685860 59685860 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 14 59685860 59685860 C T SNP DHRS7 ENST00000360557 human ensembl 54_36p -1 known nonsense c.932 p.W311* 0.04 NULL HMMPfam_adh_short;superfamily_NAD(P)-binding Rossmann-fold domains - no_errors uc003wgu.1 0 genome.wustl.edu 36 7 149614437 149614437 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 7 149614437 149614437 G T SNP uc003wgu.1 ENST00000252071 human ensembl 54_36p -1 known missense c.423 p.D141E 1 NULL - - no_errors DNAH3 55567 genome.wustl.edu 36 16 20852261 20852261 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 16 20852261 20852261 C G SNP DNAH3 NM_017539 human genbank 54_36p -1 provisional missense c.12067 p.E4023Q 1 NULL - - no_errors MYH1 4619 genome.wustl.edu 36 17 10356225 10356225 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 17 10356225 10356225 T C SNP MYH1 NM_005963 human genbank 54_36p -1 reviewed missense c.1157 p.K386R 1 HMMPfam_Myosin_head HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_tRNA-binding arm;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors SLFN12L 342615 genome.wustl.edu 36 17 30830892 30830892 + Silent SNP C C T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 17 30830892 30830892 C T SNP SLFN12L ENST00000361112 human ensembl 54_36p -1 known silent c.396 p.T132 NULL HMMPfam_AAA_4 - no_errors GPS2 2874 genome.wustl.edu 36 17 7157157 7157157 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 17 7157157 7157157 C T SNP GPS2 NM_004489 human genbank 54_36p -1 reviewed missense c.815 p.R272H 1 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7517837 7517837 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 17 7517837 7517837 C G SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.826 p.A276P 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors SALL3 27164 genome.wustl.edu 36 18 74858167 74858167 + Missense_Mutation SNP G T T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 18 74858167 74858167 G T SNP SALL3 NM_171999 human genbank 54_36p 1 validated missense c.3760 p.G1254C 0.86 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors NFATC1 4772 genome.wustl.edu 36 18 75328608 75328608 + Silent SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 18 75328608 75328608 G A SNP NFATC1 NM_172390 human genbank 54_36p 1 reviewed silent c.2130 p.E710 NULL - - no_errors EMR3 84658 genome.wustl.edu 36 19 14626803 14626803 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 19 14626803 14626803 C T SNP EMR3 NM_032571 human genbank 54_36p -1 reviewed missense c.568 p.D190N NULL HMMPfam_GPS;HMMPfam_7tm_2;HMMPfam_EGF_CA;superfamily_EGF/Laminin;superfamily_Family A G protein-coupled receptor-like - no_errors OR7C2 26658 genome.wustl.edu 36 19 14913973 14913973 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 19 14913973 14913973 G A SNP OR7C2 NM_012377 human genbank 54_36p 1 provisional missense c.673 p.V225I 0 NULL - - no_errors CIB3 117286 genome.wustl.edu 36 19 16136555 16136555 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 19 16136555 16136555 C T SNP CIB3 NM_054113 human genbank 54_36p -1 reviewed missense c.516 p.M172I 1 HMMPfam_efhand HMMPfam_efhand;superfamily_EF-hand - no_errors UBA2 10054 genome.wustl.edu 36 19 39641513 39641513 + Splice_Site SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 19 39641513 39641513 G T SNP UBA2 NM_005499 human genbank 54_36p 1 validated splice_site c.1246-1 e13-1 1 - - - no_errors SH3GL1 6455 genome.wustl.edu 36 19 4313368 4313368 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G A G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 19 4313368 4313368 G A SNP SH3GL1 NM_003025 human genbank 54_36p -1 provisional nonsense c.868 p.R290* 1 NULL HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_BAR - no_errors VN1R4 317703 genome.wustl.edu 36 19 58462410 58462410 + Silent SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 19 58462410 58462410 G T SNP VN1R4 NM_173857 human genbank 54_36p -1 validated silent c.321 p.I107 0.29 NULL - - no_errors VN1R4 317703 genome.wustl.edu 36 19 58462662 58462662 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 19 58462662 58462662 G C SNP VN1R4 NM_173857 human genbank 54_36p -1 validated missense c.69 p.F23L NULL - - no_errors PTPN18 26469 genome.wustl.edu 36 2 130845308 130845308 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 2 130845308 130845308 C T SNP PTPN18 NM_014369 human genbank 54_36p 1 reviewed missense c.991 p.R331C NULL HMMPfam_Y_phosphatase;superfamily_(Phosphotyrosine protein) phosphatases II - no_errors TTN 7273 genome.wustl.edu 36 2 179105859 179105859 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 2 179105859 179105859 G C SNP TTN NM_133378 human genbank 54_36p -1 reviewed missense c.96024 p.I32008M 1 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region ANKRD44 91526 genome.wustl.edu 36 2 197661757 197661757 + Silent SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 2 197661757 197661757 G A SNP ANKRD44 ENST00000282272 human ensembl 54_36p -1 known silent c.1149 p.H383 1 NULL - - no_stop_codon RBM44 375316 genome.wustl.edu 36 2 238390960 238390960 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 2 238390960 238390960 G A SNP RBM44 NM_001080504 human genbank 54_36p 1 validated missense c.659 p.G220E NULL - - no_errors DYSF 8291 genome.wustl.edu 36 2 71648647 71648647 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 2 71648647 71648647 G T SNP DYSF NM_003494 human genbank 54_36p 1 reviewed missense c.2570 p.W857L 1 NULL - - no_errors PROM2 150696 genome.wustl.edu 36 2 95304222 95304222 + Silent SNP T T G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 2 95304222 95304222 T G SNP PROM2 NM_144707 human genbank 54_36p 1 provisional silent c.162 p.V54 NULL - - no_errors LOC100132639 100132639 genome.wustl.edu 36 17 20358529 20358529 + Silent SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 17 20358529 20358529 G T SNP LOC100132639 XM_001716566 human genbank 54_36p 1 model silent c.846 p.L282 1 NULL - - no_errors LOC100129842 100129842 genome.wustl.edu 36 19 20520119 20520119 + RNA SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 19 20520119 20520119 G T SNP LOC100129842 XR_042310 human genbank 54_36p -1 model rna NULL NULL 0.05 - - - no_errors UBASH3A 53347 genome.wustl.edu 36 21 42740301 42740301 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 21 42740301 42740301 C G SNP UBASH3A NM_018961 human genbank 54_36p 1 validated missense c.1914 p.N638K 0.11 NULL HMMPfam_UBA;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_UBA-like;HMMPfam_PGAM;superfamily_Phosphoglycerate mutase-like - no_errors SGSM3 27352 genome.wustl.edu 36 22 39132123 39132123 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 22 39132123 39132123 G A SNP SGSM3 NM_015705 human genbank 54_36p 1 validated missense c.910 p.E304K 1 NULL - - no_errors LOC389156 389156 genome.wustl.edu 36 3 147025134 147025134 + RNA SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 3 147025134 147025134 G A SNP LOC389156 XR_017589 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene XYLB 9942 genome.wustl.edu 36 3 38382188 38382188 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 3 38382188 38382188 G T SNP XYLB NM_005108 human genbank 54_36p 1 reviewed missense c.464 p.G155V 1 HMMPfam_FGGY_N superfamily_Actin-like ATPase domain;HMMPfam_FGGY_N;HMMPfam_FGGY_C - no_errors C4orf27 54969 genome.wustl.edu 36 4 170899710 170899710 + Silent SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 4 170899710 170899710 G A SNP C4orf27 NM_017867 human genbank 54_36p -1 validated silent c.621 p.T207 0.07 NULL - - no_errors ANKRD17 26057 genome.wustl.edu 36 4 74169891 74169891 + Silent SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 4 74169891 74169891 G A SNP ANKRD17 NM_032217 human genbank 54_36p -1 reviewed silent c.7098 p.N2366 1 NULL HMMPfam_MutS_V;HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_KH_1;superfamily_Eukaryotic type KH-domain (KH-domain type I) - no_errors DOCK2 1794 genome.wustl.edu 36 5 169162646 169162646 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 5 169162646 169162646 G A SNP DOCK2 NM_004946 human genbank 54_36p 1 validated missense c.2561 p.R854Q 1 NULL - - no_errors GPR98 84059 genome.wustl.edu 36 5 90024328 90024328 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 5 90024328 90024328 A G SNP GPR98 NM_032119 human genbank 54_36p 1 reviewed missense c.7102 p.S2368G 1 NULL HMMPfam_GPS;HMMPfam_Calx-beta;HMMPfam_EPTP;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Phosphoglucomutase first 3 domains - no_errors TCP11 6954 genome.wustl.edu 36 6 35196035 35196035 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 6 35196035 35196035 C A SNP TCP11 NM_001093728 human genbank 54_36p -1 validated missense c.1033 p.V345F 0.03 NULL - - no_errors KCNK16 83795 genome.wustl.edu 36 6 39390828 39390828 + Silent SNP G G C novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 6 39390828 39390828 G C SNP KCNK16 NM_032115 human genbank 54_36p -1 reviewed silent c.858 p.G286 NULL - - no_errors BAI3 577 genome.wustl.edu 36 6 69829627 69829627 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 6 69829627 69829627 T C SNP BAI3 NM_001704 human genbank 54_36p 1 reviewed missense c.2414 p.I805T 1 NULL GPS;HMMPfam_GPS;7tm_2;HMMPfam_7tm_2;Spermadhesin CUB domain;superfamily_Spermadhesin CUB domain;TSP_1;HMMPfam_TSP_1;HRM;HMMPfam_HRM;TSP-1 type 1 repeat;superfamily_TSP-1 type 1 repeat - no_errors RIMS2 9699 genome.wustl.edu 36 8 105024226 105024226 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 8 105024226 105024226 A C SNP RIMS2 NM_001100117 human genbank 54_36p 1 validated missense c.2597 p.Y866S 1 NULL - - no_errors RP1L1 94137 genome.wustl.edu 36 8 10504290 10504290 + Silent SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 8 10504290 10504290 G T SNP RP1L1 NM_178857 human genbank 54_36p -1 validated silent c.4728 p.L1576 0.032 NULL HMMPfam_DCX,HMMPfam_S-antigen,superfamily_Doublecortin (DC) - no_errors EIF3E 3646 genome.wustl.edu 36 8 109310490 109310490 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 8 109310490 109310490 C G SNP EIF3E NM_001568 human genbank 54_36p -1 validated missense c.582 p.E194D 1 NULL - - no_errors ENSG00000211622 0 genome.wustl.edu 36 2 89624330 89624330 + Silent SNP G G C novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 2 89624330 89624330 G C SNP ENSG00000211622 ENST00000390267 human ensembl 54_36p 1 known silent c.306 p.R102 0.92 NULL - - no_stop_codon:bad_bp_length_for_coding_region C9orf84 158401 genome.wustl.edu 36 9 113516621 113516621 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 9 113516621 113516621 C A SNP C9orf84 NM_173521 human genbank 54_36p -1 validated missense c.2148 p.K716N 0.69 NULL - - no_errors IFNA1 3439 genome.wustl.edu 36 9 21430948 21430948 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 9 21430948 21430948 C G SNP IFNA1 NM_024013 human genbank 54_36p 1 provisional missense c.442 p.R148G 0.51 NULL - - no_errors GLDC 2731 genome.wustl.edu 36 9 6579283 6579283 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 9 6579283 6579283 C G SNP GLDC NM_000170 human genbank 54_36p -1 validated missense c.1492 p.A498P 1 NULL HMMPfam_GDC-P;superfamily_PLP-dependent transferases - no_errors PTCH1 5727 genome.wustl.edu 36 9 97279733 97279733 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a 9 97279733 97279733 C T SNP PTCH1 NM_000264 human genbank 54_36p -1 reviewed missense c.1420 p.V474I 1 HMMPfam_Patched superfamily_Multidrug efflux transporter AcrB transmembrane domain;Patched;HMMPfam_Patched - no_errors LRCH2 57631 genome.wustl.edu 36 X 114254104 114254104 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a X 114254104 114254104 T A SNP LRCH2 NM_020871 human genbank 54_36p -1 validated missense c.2229 p.K743N 1 NULL - - no_errors PHEX 5251 genome.wustl.edu 36 X 22025078 22025078 + Splice_Site SNP G G T novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a X 22025078 22025078 G T SNP PHEX NM_000444 human genbank 54_36p 1 reviewed splice_site c.933+1 e8+1 1 - - - no_errors FAM47B 170062 genome.wustl.edu 36 X 34872227 34872227 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a X 34872227 34872227 C G SNP FAM47B NM_152631 human genbank 54_36p 1 predicted missense c.1358 p.S453C NULL - - no_errors AKAP4 8852 genome.wustl.edu 36 X 49845232 49845232 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a X 49845232 49845232 T G SNP AKAP4 NM_003886 human genbank 54_36p -1 reviewed missense c.872 p.E291A 0.04 HMMPfam_AKAP_110 HMMPfam_AKAP_110 - no_errors BRWD3 254065 genome.wustl.edu 36 X 79823651 79823651 + Nonsense_Mutation SNP G G C novel Unknown TCGA-13-0807-01B-02W-0421-09 TCGA-13-0807-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f80466d9-6cc8-461b-acc2-addee22bd42a aff5a575-f981-4ca6-b20a-355dab7dcf8a X 79823651 79823651 G C SNP BRWD3 NM_153252 human genbank 54_36p -1 validated nonsense c.4499 p.S1500* 1 NULL HMMPfam_Bromodomain;HMMPfam_WD40;superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase;superfamily_Bromodomain - no_errors