Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ALK 238 hgsc.bcm.edu 36 2 29270274 29270274 + Missense_Mutation SNP T T A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d CHRND 1144 hgsc.bcm.edu 36 2 233101515 233101515 + Missense_Mutation SNP C C A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d CPNE1 8904 hgsc.bcm.edu 36 20 33678648 33678649 + Frame_Shift_Ins INS - - A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d FAM5C 339479 hgsc.bcm.edu 36 1 188396505 188396505 + Missense_Mutation SNP A A G novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d MYO3A 53904 hgsc.bcm.edu 36 10 26425326 26425326 + Missense_Mutation SNP A C C novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d NIPBL 25836 hgsc.bcm.edu 36 5 37011811 37011811 + Missense_Mutation SNP A A G novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d PUM1 9698 hgsc.bcm.edu 36 1 31240608 31240608 + Missense_Mutation SNP T T C novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d SDSL 113675 hgsc.bcm.edu 36 12 112358951 112358951 + Frame_Shift_Del DEL C C - novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d SLC5A10 125206 hgsc.bcm.edu 36 17 18813098 18813099 + In_Frame_Ins INS - - TAC novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d TP53 7157 hgsc.bcm.edu 36 17 7519123 7519123 + Frame_Shift_Del DEL G G - novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d TP53 7157 hgsc.bcm.edu 36 17 7519123 7519123 + Missense_Mutation SNP G G T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d VEZT 55591 hgsc.bcm.edu 36 12 94205647 94205647 + Missense_Mutation SNP C C G novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d ABCB1 5243 hgsc.bcm.edu 36 7 86982618 86982618 + Silent SNP G G A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d AGAP3 116988 hgsc.bcm.edu 36 7 150446246 150446246 + Silent SNP G G A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d FAM119A 151194 hgsc.bcm.edu 36 2 208197198 208197198 + Silent SNP C C T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d GCKR 2646 hgsc.bcm.edu 36 2 27575776 27575776 + Silent SNP C C T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d HIBADH 11112 hgsc.bcm.edu 36 7 27655740 27655740 + Silent SNP T T C novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 T T T C T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d KLHL5 51088 hgsc.bcm.edu 36 4 38791160 38791160 + Missense_Mutation SNP C C T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d NDRG1 10397 hgsc.bcm.edu 36 8 134338247 134338247 + Silent SNP G G A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d NRXN1 9378 hgsc.bcm.edu 36 2 50704226 50704226 + Silent SNP T T A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 T T T A T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d PAN3 255967 hgsc.bcm.edu 36 13 27749443 27749443 + Missense_Mutation SNP C C G novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d PLXNA4 91584 hgsc.bcm.edu 36 7 131503749 131503749 + Missense_Mutation SNP C C G novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d PRMT1 3276 hgsc.bcm.edu 36 19 54879103 54879103 + Missense_Mutation SNP C C T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C T T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d PSD3 23362 hgsc.bcm.edu 36 8 18773895 18773895 + Silent SNP G G A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d RET 5979 hgsc.bcm.edu 36 10 42942106 42942106 + Silent SNP G G A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d RICS 9743 hgsc.bcm.edu 36 11 128348122 128348122 + Silent SNP C C A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d SLC35A5 55032 hgsc.bcm.edu 36 3 113782516 113782516 + Missense_Mutation SNP A A G novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d SLC5A5 6528 hgsc.bcm.edu 36 19 17853859 17853859 + Silent SNP C C T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d TLN2 83660 hgsc.bcm.edu 36 15 60827911 60827911 + Silent SNP C C T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d TYW3 127253 hgsc.bcm.edu 36 1 74977011 74977011 + Missense_Mutation SNP C C G novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d WDR1 9948 hgsc.bcm.edu 36 4 9726837 9726837 + Missense_Mutation SNP C C T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d DKK1 22943 hgsc.bcm.edu 36 10 53744229 53744229 + Missense_Mutation SNP C C A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d BRCA1 672 hgsc.bcm.edu 36 17 38451310 38451310 + Nonsense_Mutation SNP G G A rs41293465 TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d CHRM5 1133 hgsc.bcm.edu 36 15 32142634 32142634 + Missense_Mutation SNP C C T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d DHX29 54505 hgsc.bcm.edu 36 5 54615167 54615167 + Missense_Mutation SNP G G A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d HAGH 3029 hgsc.bcm.edu 36 16 1812926 1812926 + Missense_Mutation SNP G G C novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d MDN1 23195 hgsc.bcm.edu 36 6 90541140 90541140 + Missense_Mutation SNP T T C novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 T T T C T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d METT10D 79066 hgsc.bcm.edu 36 17 2323678 2323678 + Missense_Mutation SNP A A T novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 A A A T A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d NALCN 259232 hgsc.bcm.edu 36 13 100595214 100595214 + Missense_Mutation SNP T T C novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 T T T C T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d TFDP1 7027 hgsc.bcm.edu 36 13 113335471 113335471 + Missense_Mutation SNP G G A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d TRIM36 55521 hgsc.bcm.edu 36 5 114510804 114510804 + Missense_Mutation SNP G G A novel TCGA-13-0730-01A-01W-0370-10 TCGA-13-0730-10B-01W-0370-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 33a01531-09dc-46ca-a238-8e5628fab56e 755fd271-4b83-4a5a-9e24-4ebf47113f4d