Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID GLT25D2 23127 hgsc.bcm.edu 36 1 182210943 182210943 + Missense_Mutation SNP G G T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 IGSF10 285313 hgsc.bcm.edu 36 3 152646065 152646065 + Missense_Mutation SNP A A T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 RPTOR 57521 hgsc.bcm.edu 36 17 76342410 76342411 + Frame_Shift_Ins INS - - G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 TMEM135 65084 hgsc.bcm.edu 36 11 86456441 86456441 + Missense_Mutation SNP G G C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 TNFAIP3 7128 hgsc.bcm.edu 36 6 138234115 138234115 + Missense_Mutation SNP A A C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 TOMM40 10452 hgsc.bcm.edu 36 19 50089096 50089096 + Silent SNP G G C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 APOBEC3H 164668 hgsc.bcm.edu 36 22 37827334 37827334 + Silent SNP C C T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 BOC 91653 hgsc.bcm.edu 36 3 114485036 114485036 + Silent SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 C10orf118 55088 hgsc.bcm.edu 36 10 115884793 115884793 + Silent SNP T T G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 T T T G T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 CDH22 64405 hgsc.bcm.edu 36 20 44303188 44303188 + Missense_Mutation SNP C C T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 CHRNA1 1134 hgsc.bcm.edu 36 2 175326592 175326592 + Silent SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 CRTC3 64784 hgsc.bcm.edu 36 15 88948681 88948681 + Missense_Mutation SNP C C G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 DNAH5 1767 hgsc.bcm.edu 36 5 13807367 13807367 + Silent SNP T T C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 EFEMP1 2202 hgsc.bcm.edu 36 2 55958421 55958421 + Missense_Mutation SNP C C G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 ELAVL3 1995 hgsc.bcm.edu 36 19 11430363 11430363 + Missense_Mutation SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 FAM163A 148753 hgsc.bcm.edu 36 1 178049624 178049624 + Missense_Mutation SNP A A T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 FAM186B 84070 hgsc.bcm.edu 36 12 48283334 48283334 + Missense_Mutation SNP T T C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 HERV-FRD 405754 hgsc.bcm.edu 36 6 11212995 11212995 + Missense_Mutation SNP T T G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 T T T G T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 HIRA 7290 hgsc.bcm.edu 36 22 17753104 17753104 + Missense_Mutation SNP C C G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 HMCN1 83872 hgsc.bcm.edu 36 1 184306404 184306404 + Silent SNP A A G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 HSP90B1 7184 hgsc.bcm.edu 36 12 102848445 102848445 + Missense_Mutation SNP G G C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 KCTD1 284252 hgsc.bcm.edu 36 18 22293730 22293730 + Missense_Mutation SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 NOX3 50508 hgsc.bcm.edu 36 6 155802890 155802890 + Missense_Mutation SNP A A T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 NRG2 9542 hgsc.bcm.edu 36 5 139225327 139225327 + Missense_Mutation SNP G G T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 PARS2 25973 hgsc.bcm.edu 36 1 54996505 54996505 + Silent SNP C C T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 PRICKLE2 166336 hgsc.bcm.edu 36 3 64059776 64059776 + Silent SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 SALL4 57167 hgsc.bcm.edu 36 20 49840295 49840295 + Missense_Mutation SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 SART1 9092 hgsc.bcm.edu 36 11 65501815 65501815 + Missense_Mutation SNP A A G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 SLC16A14 151473 hgsc.bcm.edu 36 2 230619270 230619270 + Silent SNP C C T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 SLC4A4 8671 hgsc.bcm.edu 36 4 72639728 72639728 + Missense_Mutation SNP C C A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 TBC1D22A 25771 hgsc.bcm.edu 36 22 45811697 45811697 + Missense_Mutation SNP A A C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 A A A C A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 TEKT3 64518 hgsc.bcm.edu 36 17 15175183 15175183 + Missense_Mutation SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 TMEM8B 51754 hgsc.bcm.edu 36 9 35832574 35832574 + Missense_Mutation SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 ZNF555 148254 hgsc.bcm.edu 36 19 2804696 2804696 + Missense_Mutation SNP T T C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 ZNF559 84527 hgsc.bcm.edu 36 19 9313608 9313608 + Missense_Mutation SNP C C A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 ABCA5 23461 hgsc.bcm.edu 36 17 64767510 64767510 + Missense_Mutation SNP C C A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 ADAMTS2 9509 hgsc.bcm.edu 36 5 178473838 178473838 + Missense_Mutation SNP T T C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 BAI3 577 hgsc.bcm.edu 36 6 69760463 69760463 + Missense_Mutation SNP C C A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 C9orf72 203228 hgsc.bcm.edu 36 9 27548578 27548578 + Missense_Mutation SNP T T C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 DLC1 10395 hgsc.bcm.edu 36 8 12992326 12992326 + Missense_Mutation SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 ENPP3 5169 hgsc.bcm.edu 36 6 132089035 132089035 + Splice_Site SNP T T C novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 KIF2B 84643 hgsc.bcm.edu 36 17 49257167 49257167 + Nonsense_Mutation SNP C C T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 KTN1 3895 hgsc.bcm.edu 36 14 55189516 55189516 + Missense_Mutation SNP A A G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 MCHR2 84539 hgsc.bcm.edu 36 6 100497715 100497715 + Nonsense_Mutation SNP G G A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 MYH9 4627 hgsc.bcm.edu 36 22 35042574 35042574 + Missense_Mutation SNP G G T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 SLC4A5 57835 hgsc.bcm.edu 36 2 74311894 74311894 + Missense_Mutation SNP C C G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 SPTB 6710 hgsc.bcm.edu 36 14 64332020 64332020 + Missense_Mutation SNP C C G novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 TEK 7010 hgsc.bcm.edu 36 9 27159607 27159607 + Missense_Mutation SNP T T A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 TP53 7157 hgsc.bcm.edu 36 17 7517577 7517577 + Splice_Site SNP C C T novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279 UBE4A 9354 hgsc.bcm.edu 36 11 117765790 117765790 + Missense_Mutation SNP C C A novel TCGA-09-1669-01A-01W-0615-10 TCGA-09-1669-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 3842cd55-d850-42b0-a79b-dc8f21688744 1cadae9b-cb52-4ba8-90e0-1e9078d6f279