Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID GPR114 221188 hgsc.bcm.edu 36 16 56158066 56158067 + Frame_Shift_Ins INS - - G novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 HIVEP1 3096 hgsc.bcm.edu 36 6 12230599 12230599 + Missense_Mutation SNP G G A novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 MGAT5 4249 hgsc.bcm.edu 36 2 134791632 134791633 + Frame_Shift_Del DEL GA GA - novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 GA GA . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 ZNF333 84449 hgsc.bcm.edu 36 19 14689502 14689502 + Missense_Mutation SNP G G C novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 ANKRD52 283373 hgsc.bcm.edu 36 12 54933797 54933797 + Missense_Mutation SNP G G A novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 CDH9 1007 hgsc.bcm.edu 36 5 27024186 27024186 + Silent SNP G G A novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 COPS8 10920 hgsc.bcm.edu 36 2 237663282 237663282 + Silent SNP A A G novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 CXorf22 170063 hgsc.bcm.edu 36 X 35895718 35895718 + Silent SNP C C T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 HNRNPH3 3189 hgsc.bcm.edu 36 10 69771797 69771797 + Missense_Mutation SNP G G A novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 HOOK3 84376 hgsc.bcm.edu 36 8 42933554 42933554 + Silent SNP A A C novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 A A A C A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 PAPPA 5069 hgsc.bcm.edu 36 9 118133454 118133454 + Silent SNP C C A novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 TMEM132D 121256 hgsc.bcm.edu 36 12 128124502 128124502 + Missense_Mutation SNP G G T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 YIPF1 54432 hgsc.bcm.edu 36 1 54104629 54104629 + Silent SNP G G A novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 PLCD4 84812 hgsc.bcm.edu 36 2 219206683 219206683 + Missense_Mutation SNP T T C novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 AMPD3 272 hgsc.bcm.edu 36 11 10463033 10463033 + Missense_Mutation SNP G G T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 C4orf14 84273 hgsc.bcm.edu 36 4 57525376 57525376 + Missense_Mutation SNP C C A novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 C9orf50 375759 hgsc.bcm.edu 36 9 131415664 131415664 + Missense_Mutation SNP G G C novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 CHD8 57680 hgsc.bcm.edu 36 14 20940066 20940066 + Nonsense_Mutation SNP C C A novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 CHN1 1123 hgsc.bcm.edu 36 2 175525161 175525161 + Missense_Mutation SNP C C G novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 CTNNB1 1499 hgsc.bcm.edu 36 3 41250773 41250773 + Missense_Mutation SNP G G C novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 LRP1B 53353 hgsc.bcm.edu 36 2 141341666 141341666 + Missense_Mutation SNP A A T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 A A A T A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 MARCO 8685 hgsc.bcm.edu 36 2 119448588 119448588 + Missense_Mutation SNP C C G novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 MORN1 79906 hgsc.bcm.edu 36 1 2295839 2295839 + Missense_Mutation SNP G G T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 OR10W1 81341 hgsc.bcm.edu 36 11 57791172 57791172 + Nonsense_Mutation SNP G G T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 PFN4 375189 hgsc.bcm.edu 36 2 24198905 24198905 + Missense_Mutation SNP C C T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 PREP 5550 hgsc.bcm.edu 36 6 105928083 105928083 + Nonsense_Mutation SNP C C T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 PSME4 23198 hgsc.bcm.edu 36 2 53947483 53947483 + Missense_Mutation SNP C C T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 ROR1 4919 hgsc.bcm.edu 36 1 64287993 64287993 + Missense_Mutation SNP C C T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 STAB2 55576 hgsc.bcm.edu 36 12 102679209 102679209 + Missense_Mutation SNP C C T novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 TP53 7157 hgsc.bcm.edu 36 17 7519281 7519281 + Splice_Site SNP T C C novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 T T C C T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11 ZNF211 10520 hgsc.bcm.edu 36 19 62844913 62844913 + Missense_Mutation SNP G G A novel TCGA-04-1514-01A-01W-0552-10 TCGA-04-1514-10A-01W-0552-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 2394e0b8-ca4c-4b79-b25f-663828115eb7 789c4060-9897-42ad-abb8-e44d2740bc11