Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ARFGEF2 10564 hgsc.bcm.edu 36 20 47038451 47038451 + Missense_Mutation SNP C C G novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 ATAD3B 83858 hgsc.bcm.edu 36 1 1414489 1414489 + Missense_Mutation SNP C C A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 BCL11A 53335 hgsc.bcm.edu 36 2 60542989 60542989 + Missense_Mutation SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 C19orf47 126526 hgsc.bcm.edu 36 19 45533868 45533868 + Missense_Mutation SNP C C T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 C2orf71 388939 hgsc.bcm.edu 36 2 29141430 29141431 + In_Frame_Ins INS - - GCT novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 DOK2 9046 hgsc.bcm.edu 36 8 21823005 21823006 + Frame_Shift_Ins INS - - A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 EPHA6 285220 hgsc.bcm.edu 36 3 98188958 98188958 + Missense_Mutation SNP G G C novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 FADS2 9415 hgsc.bcm.edu 36 11 61352599 61352600 + Frame_Shift_Ins INS - - G novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 NBPF1 55672 hgsc.bcm.edu 36 1 16763950 16763952 + In_Frame_Del DEL TCG TCG - novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 TCG TCG . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 NBPF12 440675 hgsc.bcm.edu 36 1 144929375 144929375 + Missense_Mutation SNP C C A rs5015286 TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 NR4A2 4929 hgsc.bcm.edu 36 2 156894619 156894620 + Frame_Shift_Ins INS - - G novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 PDE12 201626 hgsc.bcm.edu 36 3 57517972 57517972 + Missense_Mutation SNP A A T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 PGAP1 80055 hgsc.bcm.edu 36 2 197445444 197445444 + Missense_Mutation SNP A A C novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 RPA1 6117 hgsc.bcm.edu 36 17 1747193 1747194 + Frame_Shift_Ins INS - - G novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 - - . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 SYNE2 23224 hgsc.bcm.edu 36 14 63754929 63754929 + Missense_Mutation SNP G G C novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 TP53 7157 hgsc.bcm.edu 36 17 7518927 7518927 + Missense_Mutation SNP A A C novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 ALPK2 115701 hgsc.bcm.edu 36 18 54397446 54397446 + Silent SNP C C T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 BAT5 7920 hgsc.bcm.edu 36 6 31777860 31777860 + Silent SNP C C T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 C19orf18 147685 hgsc.bcm.edu 36 19 63161859 63161859 + Missense_Mutation SNP G G C novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 C6orf168 84553 hgsc.bcm.edu 36 6 99846374 99846374 + Silent SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 GTF2IRD1 9569 hgsc.bcm.edu 36 7 73643154 73643154 + Silent SNP C C T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 IMPG2 50939 hgsc.bcm.edu 36 3 102447416 102447416 + Missense_Mutation SNP G G C novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 KRTAP19-4 337971 hgsc.bcm.edu 36 21 30791269 30791269 + Missense_Mutation SNP G G T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 RGS9 8787 hgsc.bcm.edu 36 17 60651718 60651718 + Missense_Mutation SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 RUNX2 860 hgsc.bcm.edu 36 6 45622685 45622685 + Missense_Mutation SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 SEC14L3 266629 hgsc.bcm.edu 36 22 29190822 29190822 + Missense_Mutation SNP T T A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 T T T A T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 SLC9A8 23315 hgsc.bcm.edu 36 20 47865032 47865032 + Missense_Mutation SNP C C T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 SNCB 6620 hgsc.bcm.edu 36 5 175980868 175980868 + Missense_Mutation SNP C C T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 ZMAT3 64393 hgsc.bcm.edu 36 3 180227980 180227980 + Missense_Mutation SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 ZNF235 9310 hgsc.bcm.edu 36 19 49484668 49484668 + Missense_Mutation SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 ZNF536 9745 hgsc.bcm.edu 36 19 35717640 35717640 + Silent SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 CDC73 79577 hgsc.bcm.edu 36 1 191448182 191448182 + Missense_Mutation SNP C C A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 CHST15 51363 hgsc.bcm.edu 36 10 125788152 125788152 + Nonsense_Mutation SNP C C T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 KCTD8 386617 hgsc.bcm.edu 36 4 43871767 43871767 + Missense_Mutation SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 KL 9365 hgsc.bcm.edu 36 13 32536043 32536043 + Missense_Mutation SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 MYT1L 23040 hgsc.bcm.edu 36 2 1870318 1870318 + Missense_Mutation SNP C C A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 TACC1 6867 hgsc.bcm.edu 36 8 38796364 38796364 + Missense_Mutation SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 UBE4B 10277 hgsc.bcm.edu 36 1 10153945 10153945 + Missense_Mutation SNP C C T novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 TP53 7157 hgsc.bcm.edu 36 17 7518263 7518263 + Missense_Mutation SNP C T T rs11540652 byHapMap TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 C C T T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6 L1CAM 3897 hgsc.bcm.edu 36 X 152784145 152784145 + Missense_Mutation SNP G G A novel TCGA-04-1364-01A-01W-0490-10 TCGA-04-1364-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 81daabc8-b592-4546-9fd1-717777caeb06 2969fd79-2c88-4b57-aeb3-cc65bb2799a6