Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ASH1L 55870 broad.mit.edu 36 1 153718701 153718701 + Missense_Mutation SNP G G A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f SEC16B 89866 broad.mit.edu 36 1 176168489 176168489 + Missense_Mutation SNP G G C novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f PPP1R12B 4660 broad.mit.edu 36 1 200673618 200673618 + Missense_Mutation SNP C C G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f PTPN14 5784 broad.mit.edu 36 1 212704749 212704749 + Silent SNP G G A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f VN1R5 317705 broad.mit.edu 36 1 245486883 245486883 + Missense_Mutation SNP T T C novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f ARMC4 55130 broad.mit.edu 36 10 28189712 28189712 + Missense_Mutation SNP C C G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f OR52N4 390072 broad.mit.edu 36 11 5732659 5732659 + Missense_Mutation SNP T T A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f OR5W2 390148 broad.mit.edu 36 11 55437854 55437854 + Missense_Mutation SNP G G A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f FOLR2 2350 broad.mit.edu 36 11 71610286 71610286 + Missense_Mutation SNP C C A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA;Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f ANKRD52 283373 broad.mit.edu 36 12 54934255 54934255 + Missense_Mutation SNP C C G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f GCN1L1 10985 broad.mit.edu 36 12 119085085 119085085 + Silent SNP C C T novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f SLC7A7 9056 broad.mit.edu 36 14 22317889 22317889 + Silent SNP G G C novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f ANPEP 290 broad.mit.edu 36 15 88136751 88136751 + Missense_Mutation SNP G G A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f BLM 641 broad.mit.edu 36 15 89093757 89093757 + Missense_Mutation SNP G G T novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f SMG1 23049 broad.mit.edu 36 16 18790280 18790280 + Missense_Mutation SNP C C T novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f GFOD2 81577 broad.mit.edu 36 16 66267068 66267068 + Missense_Mutation SNP C C T novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f RANBP10 57610 broad.mit.edu 36 16 66322892 66322892 + Silent SNP G G A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f MYH1 4619 broad.mit.edu 36 17 10345384 10345384 + Missense_Mutation SNP T T G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 T T G G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA;Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f TOP2A 7153 broad.mit.edu 36 17 35808375 35808375 + Missense_Mutation SNP C C A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA;Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f STAT5B 6777 broad.mit.edu 36 17 37615794 37615794 + Missense_Mutation SNP G G C novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f BRCA1 672 broad.mit.edu 36 17 38479937 38479937 + Nonsense_Mutation SNP G G A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f MRPL10 124995 broad.mit.edu 36 17 43259416 43259416 + Missense_Mutation SNP A A G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f AP1M1 8907 broad.mit.edu 36 19 16175404 16175404 + Nonsense_Mutation SNP G G A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f NCAN 1463 broad.mit.edu 36 19 19190823 19190823 + Missense_Mutation SNP C C T novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f CD22 933 broad.mit.edu 36 19 40528939 40528939 + Missense_Mutation SNP T T A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f SLC16A14 151473 broad.mit.edu 36 2 230632059 230632059 + Missense_Mutation SNP A A C novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f KIAA0406 9675 broad.mit.edu 36 20 36073848 36073848 + Missense_Mutation SNP G G C novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f C3orf31 132001 broad.mit.edu 36 3 11826157 11826157 + Splice_Site SNP C C G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f CACNA1D 776 broad.mit.edu 36 3 53506497 53506497 + Nonsense_Mutation SNP C C T novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f GFM1 85476 broad.mit.edu 36 3 159859422 159859422 + Silent SNP A A G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f YEATS2 55689 broad.mit.edu 36 3 184924915 184924915 + Silent SNP T T A novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f BMP3 651 broad.mit.edu 36 4 82186277 82186277 + Silent SNP C C T novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f APC 324 broad.mit.edu 36 5 112198581 112198581 + Missense_Mutation SNP G G T novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f HARS 3035 broad.mit.edu 36 5 140034798 140034798 + Silent SNP A A G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 A A G G A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f KCTD20 222658 broad.mit.edu 36 6 36557496 36557496 + Missense_Mutation SNP G G C novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f SYNCRIP 10492 broad.mit.edu 36 6 86381659 86381659 + Missense_Mutation SNP T T C novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f ALDH8A1 64577 broad.mit.edu 36 6 135295636 135295636 + Missense_Mutation SNP C C G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f AKAP12 9590 broad.mit.edu 36 6 151714981 151714981 + Silent SNP T T G novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 T T G G T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f ADCY1 107 broad.mit.edu 36 7 45663904 45663904 + Missense_Mutation SNP C C T novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f PMPCB 9512 broad.mit.edu 36 7 102736641 102736641 + Missense_Mutation SNP G G C novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f TP53 7157 broad.mit.edu 36 17 7518904 7518905 + Frame_Shift_Del DEL CA CA - novel none TCGA-04-1357-01A-01W-0492-08 TCGA-04-1357-11A-01W-0492-08 CA CA - - CA CA Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 184467e7-409e-4faa-bdb1-4d7170eb943e 9df2678e-697e-4a03-9abe-0b3edba10e2f