Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error PADI2 11240 genome.wustl.edu 36 1 17291556 17291556 + Missense_Mutation SNP C C T Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 1 17291556 17291556 C T SNP PADI2 NM_007365 human genbank 54_36p -1 reviewed missense c.589 p.G197R 0.984 NULL - - no_errors GPR158 57512 genome.wustl.edu 36 10 25926869 25926869 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 10 25926869 25926869 T C SNP GPR158 NM_020752 human genbank 54_36p 1 validated missense c.2308 p.S770P 1 NULL HMMPfam_7tm_3;superfamily_EGF/Laminin - no_errors PCDH15 65217 genome.wustl.edu 36 10 55286974 55286974 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 10 55286974 55286974 G T SNP PCDH15 NM_033056 human genbank 54_36p -1 reviewed missense c.3773 p.T1258N 0.98 NULL HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors FAR1 84188 genome.wustl.edu 36 11 13705692 13705692 + Missense_Mutation SNP A T T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 11 13705692 13705692 A T SNP FAR1 NM_032228 human genbank 54_36p 1 validated missense c.1271 p.D424V 1 NULL - - no_errors TTC9C 283237 genome.wustl.edu 36 11 62253040 62253040 + Silent SNP G G T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 11 62253040 62253040 G T SNP TTC9C NM_173810 human genbank 54_36p 1 provisional silent c.144 p.P48 NULL - - no_errors DAO 1610 genome.wustl.edu 36 12 107805409 107805409 + Silent SNP C C T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 12 107805409 107805409 C T SNP DAO NM_001917 human genbank 54_36p 1 reviewed silent c.249 p.N83 0.65 HMMPfam_DAO HMMPfam_DAO;superfamily_Nucleotide-binding domain;superfamily_FAD-linked reductases C-terminal domain - no_errors PRICKLE1 144165 genome.wustl.edu 36 12 41144824 41144824 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 12 41144824 41144824 G C SNP PRICKLE1 NM_153026 human genbank 54_36p -1 validated missense c.1279 p.L427V 1 NULL HMMPfam_LIM;HMMPfam_PET;superfamily_Glucocorticoid receptor-like (DNA-binding domain) - no_errors KRT79 338785 genome.wustl.edu 36 12 51504354 51504354 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 12 51504354 51504354 G T SNP KRT79 NM_175834 human genbank 54_36p -1 validated missense c.915 p.N305K 1 NULL HMMPfam_Filament;superfamily_Prefoldin;superfamily_STAT;superfamily_Tubulin chaperone cofactor A - no_errors LRIG3 121227 genome.wustl.edu 36 12 57560777 57560777 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 12 57560777 57560777 G C SNP LRIG3 NM_153377 human genbank 54_36p -1 provisional missense c.1654 p.L552V 1 NULL - - no_errors PLEK2 26499 genome.wustl.edu 36 14 66931898 66931898 + Silent SNP G G A novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 14 66931898 66931898 G A SNP PLEK2 NM_016445 human genbank 54_36p -1 provisional silent c.363 p.F121 1 NULL "HMMPfam_DEP;HMMPfam_PH;superfamily_""Winged helix"" DNA-binding domain;superfamily_PH domain-like" - no_errors NUMB 8650 genome.wustl.edu 36 14 72813133 72813133 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 14 72813133 72813133 G A SNP NUMB NM_001005743 human genbank 54_36p -1 reviewed missense c.1862 p.A621V 1 NULL HMMPfam_PID;HMMPfam_NumbF;superfamily_PH domain-like - no_errors CDH13 1012 genome.wustl.edu 36 16 81808467 81808467 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 16 81808467 81808467 G T SNP CDH13 NM_001257 human genbank 54_36p 1 reviewed missense c.500 p.R167M 1 HMMPfam_Cadherin HMMPfam_Cadherin;HMMPfam_Cadherin_pro;superfamily_Cadherin-like - no_errors CDH13 1012 genome.wustl.edu 36 16 81808476 81808476 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 16 81808476 81808476 G T SNP CDH13 NM_001257 human genbank 54_36p 1 reviewed missense c.509 p.R170M 1 HMMPfam_Cadherin HMMPfam_Cadherin;HMMPfam_Cadherin_pro;superfamily_Cadherin-like - no_errors RAP1GAP2 23108 genome.wustl.edu 36 17 2876141 2876141 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 17 2876141 2876141 C T SNP GARNL4 NM_015085 human genbank 54_36p 1 validated missense c.1841 p.P614L 1 NULL HMMPfam_Rap_GAP;superfamily_Rap/Ran-GAP (Pfam 02145) - no_errors TP53 7157 genome.wustl.edu 36 17 7518284 7518284 + Missense_Mutation SNP G A A rs28934573 Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 17 7518284 7518284 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.722 p.S241F 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors FARSA 2193 genome.wustl.edu 36 19 12902497 12902497 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 19 12902497 12902497 G A SNP FARSA NM_004461 human genbank 54_36p -1 validated missense c.214 p.R72W 1 NULL "HMMPfam_tRNA-synt_2d;HMMPfam_HTH_11;superfamily_""Winged helix"" DNA-binding domain;superfamily_Class II aaRS and biotin synthetases" - no_errors MFSD9 84804 genome.wustl.edu 36 2 102701787 102701787 + Missense_Mutation SNP G A A novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 2 102701787 102701787 G A SNP MFSD9 NM_032718 human genbank 54_36p -1 validated missense c.949 p.R317W 0.99 NULL - - no_errors PGAP1 80055 genome.wustl.edu 36 2 197489528 197489528 + Silent SNP T T C novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 2 197489528 197489528 T C SNP PGAP1 NM_024989 human genbank 54_36p -1 validated silent c.336 p.A112 1 HMMPfam_PGAP1 HMMPfam_PGAP1;superfamily_alpha/beta-Hydrolases - no_errors FAM117B 150864 genome.wustl.edu 36 2 203338550 203338550 + Nonsense_Mutation SNP A A T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 2 203338550 203338550 A T SNP FAM117B NM_173511 human genbank 54_36p 1 validated nonsense c.856 p.K286* 1 NULL - - no_errors VWA3B 200403 genome.wustl.edu 36 2 98233285 98233285 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 2 98233285 98233285 A G SNP VWA3B NM_144992 human genbank 54_36p 1 provisional missense c.2746 p.N916D 0.95 NULL - - no_errors NCAM2 4685 genome.wustl.edu 36 21 21574817 21574817 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 21 21574817 21574817 G C SNP NCAM2 NM_004540 human genbank 54_36p 1 reviewed missense c.104 p.G35A 1 HMMPfam_I-set HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;HMMPfam_ig;superfamily_Immunoglobulin - no_errors TTC3 7267 genome.wustl.edu 36 21 37418871 37418871 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 21 37418871 37418871 A G SNP TTC3 NM_001001894 human genbank 54_36p 1 validated missense c.1192 p.I398V 0.02 NULL HMMPfam_TPR_1;HMMPfam_zf-C3HC4;superfamily_DEATH domain;HMMPfam_TPR_2;superfamily_Spectrin repeat;superfamily_TPR-like;superfamily_RING/U-box - no_errors CBX7 23492 genome.wustl.edu 36 22 37859983 37859983 + Silent SNP G T T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 22 37859983 37859983 G T SNP CBX7 NM_175709 human genbank 54_36p -1 validated silent c.615 p.A205 0.67 NULL HMMPfam_Chromo;superfamily_Chromo domain-like - no_errors KIAA1644 85352 genome.wustl.edu 36 22 43024013 43024013 + Silent SNP C C T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 22 43024013 43024013 C T SNP KIAA1644 NM_001099294 human genbank 54_36p -1 predicted silent c.153 p.S51 0.89 NULL - - no_errors CADM2 253559 genome.wustl.edu 36 3 85858344 85858344 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 3 85858344 85858344 A G SNP CADM2 NM_153184 human genbank 54_36p 1 validated missense c.23 p.N8S 1 NULL - - no_errors CAMK2D 817 genome.wustl.edu 36 4 114600794 114600794 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 4 114600794 114600794 A C SNP CAMK2D NM_001221 human genbank 54_36p -1 reviewed missense c.1162 p.L388V 1 HMMPfam_CaMKII_AD HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like);HMMPfam_CaMKII_AD - no_errors LRBA 987 genome.wustl.edu 36 4 151612283 151612283 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 4 151612283 151612283 A T SNP LRBA NM_006726 human genbank 54_36p -1 validated missense c.6643 p.W2215R 1 HMMPfam_Beach HMMPfam_Beach;HMMPfam_WD40;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_DUF1088;superfamily_WD40 repeat-like;superfamily_ARM repeat;superfamily_PH domain-like;superfamily_BEACH domain - no_errors PPP2CA 5515 genome.wustl.edu 36 5 133565562 133565562 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 5 133565562 133565562 C G SNP PPP2CA NM_002715 human genbank 54_36p -1 reviewed missense c.362 p.R121T 1 HMMPfam_Metallophos HMMPfam_Metallophos;superfamily_Metallo-dependent phosphatases - no_errors PCDHB9 56127 genome.wustl.edu 36 5 140549022 140549022 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 5 140549022 140549022 G A SNP PCDHB9 NM_019119 human genbank 54_36p 1 reviewed missense c.1946 p.S649N 0.48 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region NNT 23530 genome.wustl.edu 36 5 43691842 43691842 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 5 43691842 43691842 G A SNP NNT NM_012343 human genbank 54_36p 1 reviewed missense c.2203 p.A735T 1 HMMPfam_PNTB HMMPfam_PNTB;HMMPfam_AlaDh_PNT_C;HMMPfam_AlaDh_PNT_N;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_Formate/glycerate dehydrogenase catalytic domain-like;superfamily_DHS-like NAD/FAD-binding domain - no_errors SOBP 55084 genome.wustl.edu 36 6 108061758 108061758 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 6 108061758 108061758 C A SNP SOBP NM_018013 human genbank 54_36p 1 validated missense c.1017 p.N339K 1 NULL - - no_errors MCM9 254394 genome.wustl.edu 36 6 119280502 119280502 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 6 119280502 119280502 G A SNP MCM9 NM_153255 human genbank 54_36p -1 reviewed missense c.827 p.S276L 0.05 NULL HMMPfam_MCM;superfamily_Nucleic acid-binding proteins;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors CYP21A2 1589 genome.wustl.edu 36 6 32114194 32114196 + In_Frame_Del DEL CTG CTG - Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 CTG CTG CTG - CTG CTG Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 6 32114194 32114196 CTG - DEL CYP21A2 NM_000500 human genbank 54_36p 1 reviewed in_frame_del c.16_18 p.L9in_frame_del 0.796:0.973:0.975 NULL - (deletion:cds_exon[32114179,32114380]) no_errors ANKS1A 23294 genome.wustl.edu 36 6 35093620 35093620 + Nonsense_Mutation SNP C C T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 6 35093620 35093620 C T SNP ANKS1A NM_015245 human genbank 54_36p 1 validated nonsense c.1816 p.R606* 1 NULL - - no_errors SLC18A1 6570 genome.wustl.edu 36 8 20082690 20082691 + Frame_Shift_Ins INS - - T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 8 20082690 20082691 - T INS SLC18A1 NM_003053 human genbank 54_36p -1 validated frame_shift_ins c.66_65 p.V23fs 1.000:0.998 NULL - - no_errors RB1CC1 9821 genome.wustl.edu 36 8 53749013 53749013 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 8 53749013 53749013 T C SNP RB1CC1 NM_014781 human genbank 54_36p -1 validated missense c.947 p.D316G 1 NULL superfamily_Prefoldin;superfamily_Ubiquitin-like - no_errors NUP188 23511 genome.wustl.edu 36 9 130770618 130770618 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 9 130770618 130770618 G A SNP NUP188 NM_015354 human genbank 54_36p 1 validated missense c.598 p.V200M 1 NULL superfamily_FAD-linked oxidases C-terminal domain - no_errors KIAA0649 9858 genome.wustl.edu 36 9 137519770 137519770 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1349-01A-01W-0494-09 TCGA-04-1349-11A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx e456f707-f0a0-4624-98bc-e9dfe779182b 697786b0-4757-40a7-9650-8c2f2e1774db 9 137519770 137519770 C T SNP KIAA0649 NM_014811 human genbank 54_36p 1 validated missense c.3593 p.T1198M 0.53 NULL - - no_errors