Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context SLC9A1 6548 broad.mit.edu 36 1 27305134 27305134 + Silent SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 27305134 27305134 SLC9A1 1 C C T 20 FLG2 388698 broad.mit.edu 36 1 150590679 150590679 + Silent SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 150590679 150590679 FLG2 1 G G A 40 PAQR6 79957 broad.mit.edu 36 1 154481219 154481219 + Silent SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 154481219 154481219 PAQR6 1 G G A 43 RCSD1 92241 broad.mit.edu 36 1 165933274 165933274 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 165933274 165933274 RCSD1 1 G G T 35 HMCN1 83872 broad.mit.edu 36 1 184350680 184350680 + Nonsense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 184350680 184350680 HMCN1 1 C C T 27 JMJD4 65094 broad.mit.edu 36 1 225987948 225987948 + Silent SNP C C G novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 225987948 225987948 JMJD4 1 C C G 30 OBSCN 84033 broad.mit.edu 36 1 226466919 226466919 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 226466919 226466919 OBSCN 1 G G A 47 PLD5 200150 broad.mit.edu 36 1 240450028 240450028 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 240450028 240450028 PLD5 1 G G A 40 KIAA1217 56243 broad.mit.edu 36 10 24802856 24802856 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24802856 24802856 KIAA1217 10 G G A 41 ARMC4 55130 broad.mit.edu 36 10 28273346 28273346 + Silent SNP C C A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 28273346 28273346 ARMC4 10 C C A 29 COL17A1 1308 broad.mit.edu 36 10 105809882 105809882 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105809882 105809882 COL17A1 10 C C T 25 DOCK1 1793 broad.mit.edu 36 10 129097358 129097359 + Missense_Mutation DNP CT CT AG novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 129097358 129097359 DOCK1 10 CT CT AG 20 CNTN5 53942 broad.mit.edu 36 11 99600728 99600728 + Nonsense_Mutation SNP C C A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 99600728 99600728 CNTN5 11 C C A 29 TBC1D4 9882 broad.mit.edu 36 13 74767050 74767050 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74767050 74767050 TBC1D4 13 G G A 43 RASA3 22821 broad.mit.edu 36 13 113769356 113769356 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113769356 113769356 RASA3 13 T T G 64 TEP1 7011 broad.mit.edu 36 14 19933904 19933904 + Silent SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 19933904 19933904 TEP1 14 G G A 40 KHNYN 23351 broad.mit.edu 36 14 23970921 23970921 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23970921 23970921 KHNYN 14 C C T 25 AGBL1 123624 broad.mit.edu 36 15 85018599 85018599 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 85018599 85018599 AGBL1 15 G G A 34 ZNF785 146540 broad.mit.edu 36 16 30501512 30501512 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30501512 30501512 ZNF785 16 C C T 27 MYBBP1A 10514 broad.mit.edu 36 17 4400238 4400238 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4400238 4400238 MYBBP1A 17 C C G 19 TP53 7157 broad.mit.edu 36 17 7519275 7519275 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7519275 7519275 TP53 17 G G T 41 uc002igz.2 284071 broad.mit.edu 36 17 40100926 40100926 + Silent SNP T T C novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 40100926 40100926 uc002igz.2 17 T T C 51 THOP1 7064 broad.mit.edu 36 19 2750759 2750759 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2750759 2750759 THOP1 19 A A C 10 MYT1L 23040 broad.mit.edu 36 2 1885923 1885923 + Silent SNP A A G novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 1885923 1885923 MYT1L 2 A A G 8 ANKRD57 65124 broad.mit.edu 36 2 109730229 109730229 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109730229 109730229 ANKRD57 2 G G A 39 TTN 7273 broad.mit.edu 36 2 179148864 179148864 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179148864 179148864 TTN 2 A A G 10 FAM124B 79843 broad.mit.edu 36 2 224974366 224974366 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 224974366 224974366 FAM124B 2 G G A 45 PER2 8864 broad.mit.edu 36 2 238834268 238834268 + Silent SNP A A C novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 238834268 238834268 PER2 2 A A C 13 C20orf118 140711 broad.mit.edu 36 20 34940984 34940984 + Silent SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 34940984 34940984 C20orf118 20 C C T 28 PREX1 57580 broad.mit.edu 36 20 46738641 46738641 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46738641 46738641 PREX1 20 C C T 23 HIRA 7290 broad.mit.edu 36 22 17720961 17720961 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17720961 17720961 HIRA 22 C C A 24 TTLL12 23170 broad.mit.edu 36 22 41900461 41900461 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41900461 41900461 TTLL12 22 A A C 9 SNRK 54861 broad.mit.edu 36 3 43364243 43364243 + Silent SNP C C T rs2036617 byCluster;byFrequency;by2Hit2Allele;byHapMap TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 43364243 43364243 SNRK 3 C C T 19 MON1A 84315 broad.mit.edu 36 3 49924412 49924412 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49924412 49924412 MON1A 3 C C T 19 SUCNR1 56670 broad.mit.edu 36 3 153081999 153081999 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 153081999 153081999 SUCNR1 3 A A T 2 HSD17B11 51170 broad.mit.edu 36 4 88480763 88480763 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88480763 88480763 HSD17B11 4 G G A 44 EXOC3 11336 broad.mit.edu 36 5 507157 507157 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 507157 507157 EXOC3 5 C C A 18 C7 730 broad.mit.edu 36 5 41012639 41012639 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41012639 41012639 C7 5 G G A 48 PCDHA4 56144 broad.mit.edu 36 5 140168448 140168448 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140168448 140168448 PCDHA4 5 C C T 27 GRM6 2916 broad.mit.edu 36 5 178346490 178346490 + Silent SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 178346490 178346490 GRM6 5 G G A 38 SLC44A4 80736 broad.mit.edu 36 6 31939439 31939439 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31939439 31939439 SLC44A4 6 T T C 64 UTRN 7402 broad.mit.edu 36 6 145199306 145199306 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 145199306 145199306 UTRN 6 T T C 52 HECW1 23072 broad.mit.edu 36 7 43556662 43556662 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43556662 43556662 HECW1 7 G G A 44 C7orf65 401335 broad.mit.edu 36 7 47661472 47661472 + Splice_Site_SNP SNP G G C novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 47661472 47661472 C7orf65 7 G G C 44 SLC20A2 6575 broad.mit.edu 36 8 42394594 42394594 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42394594 42394594 SLC20A2 8 C C T 30 OR1L4 254973 broad.mit.edu 36 9 124526336 124526336 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124526336 124526336 OR1L4 9 C C G 28 SHROOM2 357 broad.mit.edu 36 X 9860829 9860829 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 9860829 9860829 SHROOM2 23 C C T 31 WWC3 55841 broad.mit.edu 36 X 10056631 10056631 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10056631 10056631 WWC3 23 C C T 25 DMD 1756 broad.mit.edu 36 X 32292660 32292660 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32292660 32292660 DMD 23 G G A 45 FAM47A 158724 broad.mit.edu 36 X 34058180 34058180 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34058180 34058180 FAM47A 23 G G T 44 AWAT1 158833 broad.mit.edu 36 X 69376745 69376745 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69376745 69376745 AWAT1 23 G G T 34 SASH3 54440 broad.mit.edu 36 X 128754653 128754653 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 128754653 128754653 SASH3 23 C C T 17 ZNF185 7739 broad.mit.edu 36 X 151864628 151864628 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2110-01 TCGA-61-2110-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151864628 151864628 ZNF185 23 C C A 32