Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context HECTD3 79654 broad.mit.edu 36 1 45247932 45247932 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45247932 45247932 HECTD3 1 T T C 60 MAGI3 260425 broad.mit.edu 36 1 114015900 114015900 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 114015900 114015900 MAGI3 1 G G A 41 KPRP 448834 broad.mit.edu 36 1 150999246 150999246 + Silent SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 150999246 150999246 KPRP 1 C C T 28 DHX9 1660 broad.mit.edu 36 1 181079059 181079059 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 181079059 181079059 DHX9 1 T T G 59 OR2L13 284521 broad.mit.edu 36 1 246329995 246329995 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 246329995 246329995 OR2L13 1 G G A 43 PPYR1 5540 broad.mit.edu 36 10 46507280 46507280 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 46507280 46507280 PPYR1 10 G G A 47 C10orf118 55088 broad.mit.edu 36 10 115907399 115907399 + Silent SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 115907399 115907399 C10orf118 10 C C T 28 OR52E4 390081 broad.mit.edu 36 11 5862716 5862716 + Silent SNP T T C novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 5862716 5862716 OR52E4 11 T T C 56 NEU3 10825 broad.mit.edu 36 11 74383296 74383296 + Silent SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 74383296 74383296 NEU3 11 C C T 32 AEBP2 121536 broad.mit.edu 36 12 19484524 19484524 + Silent SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 19484524 19484524 AEBP2 12 G G A 33 FAM70B 348013 broad.mit.edu 36 13 113599140 113599140 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113599140 113599140 FAM70B 13 G G A 43 AHNAK2 113146 broad.mit.edu 36 14 104483894 104483894 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104483894 104483894 AHNAK2 14 A A C 8 VPS18 57617 broad.mit.edu 36 15 38978947 38978947 + Silent SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 38978947 38978947 VPS18 15 C C T 26 ARNT2 9915 broad.mit.edu 36 15 78587555 78587555 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78587555 78587555 ARNT2 15 G G A 39 ZC3H7A 29066 broad.mit.edu 36 16 11765003 11765003 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11765003 11765003 ZC3H7A 16 T T C 51 FBXL19 54620 broad.mit.edu 36 16 30865665 30865665 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30865665 30865665 FBXL19 16 G G A 38 FAM83G 644815 broad.mit.edu 36 17 18815469 18815469 + Silent SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 18815469 18815469 FAM83G 17 C C T 23 UNC45B 146862 broad.mit.edu 36 17 30499563 30499563 + Silent SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 30499563 30499563 UNC45B 17 G G A 39 DDX5 1655 broad.mit.edu 36 17 59929591 59929591 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59929591 59929591 DDX5 17 T T C 49 DSG3 1830 broad.mit.edu 36 18 27309913 27309913 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27309913 27309913 DSG3 18 T T G 59 TPM4 7171 broad.mit.edu 36 19 16039452 16039452 + Silent SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 16039452 16039452 TPM4 19 G G A 33 CCDC85A 114800 broad.mit.edu 36 2 56453098 56453098 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56453098 56453098 CCDC85A 2 G G A 37 TET3 200424 broad.mit.edu 36 2 74182800 74182800 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74182800 74182800 TET3 2 C C T 23 FAM123C 205147 broad.mit.edu 36 2 131238667 131238667 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 131238667 131238667 FAM123C 2 C C T 26 DGKD 8527 broad.mit.edu 36 2 234031776 234031776 + Silent SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 234031776 234031776 DGKD 2 C C T 31 ZNF831 128611 broad.mit.edu 36 20 57215425 57215425 + Nonsense_Mutation SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 57215425 57215425 ZNF831 20 C C T 27 KBTBD8 84541 broad.mit.edu 36 3 67136980 67136980 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67136980 67136980 KBTBD8 3 A A G 3 TNPO1 3842 broad.mit.edu 36 5 72204229 72204229 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72204229 72204229 TNPO1 5 G G A 38 ETF1 2107 broad.mit.edu 36 5 137882296 137882296 + Silent SNP G G T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 137882296 137882296 ETF1 5 G G T 45 PCDHB16 57717 broad.mit.edu 36 5 140544190 140544190 + Silent SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 140544190 140544190 PCDHB16 5 G G A 46 KCTD16 57528 broad.mit.edu 36 5 143833771 143833771 + Silent SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 143833771 143833771 KCTD16 5 G G A 33 ABCC10 89845 broad.mit.edu 36 6 43523456 43523456 + Silent SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 43523456 43523456 ABCC10 6 G G A 40 TBX18 9096 broad.mit.edu 36 6 85529070 85529070 + Silent SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 85529070 85529070 TBX18 6 C C T 27 ANKRD6 22881 broad.mit.edu 36 6 90380262 90380262 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 90380262 90380262 ANKRD6 6 C C T 27 ETV1 2115 broad.mit.edu 36 7 13937754 13937754 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13937754 13937754 ETV1 7 G G A 43 DGKB 1607 broad.mit.edu 36 7 14613624 14613624 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14613624 14613624 DGKB 7 G G C 37 CRCP 27297 broad.mit.edu 36 7 65217335 65217335 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65217335 65217335 CRCP 7 G G A 36 BAZ1B 9031 broad.mit.edu 36 7 72522647 72522647 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72522647 72522647 BAZ1B 7 C C T 27 PRKDC 5591 broad.mit.edu 36 8 48896744 48896744 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48896744 48896744 PRKDC 8 T T C 61 TRPA1 8989 broad.mit.edu 36 8 73134192 73134192 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73134192 73134192 TRPA1 8 T T G 49 KIAA1161 57462 broad.mit.edu 36 9 34361740 34361740 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34361740 34361740 KIAA1161 9 C C T 27 TP53 7157 broad.mit.edu 36 17 7520148 7520157 + Frame_Shift_Del DEL GGCTGGTGCA - - novel Unknown TCGA-61-2101-01 TCGA-61-2101-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 7520148 7520157 TP53 17 GGCTGGTGCA - - 43