Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
HSPG2	3339	broad.mit.edu	36	1	22095357	22095357	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	22095357	22095357	HSPG2	1	A	A	G	10
USP21	27005	broad.mit.edu	36	1	159397442	159397442	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	159397442	159397442	USP21	1	C	C	T	23
RERG	85004	broad.mit.edu	36	12	15153377	15153377	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	15153377	15153377	RERG	12	C	C	T	26
ZNF140	7699	broad.mit.edu	36	12	132169760	132169760	+	Splice_Site_SNP	SNP	A	A	C	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	132169760	132169760	ZNF140	12	A	A	C	7
GPR132	29933	broad.mit.edu	36	14	104589067	104589067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	104589067	104589067	GPR132	14	C	C	T	23
MYH1	4619	broad.mit.edu	36	17	10339040	10339040	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10339040	10339040	MYH1	17	C	C	T	19
SUPT6H	6830	broad.mit.edu	36	17	24030025	24030025	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	24030025	24030025	SUPT6H	17	T	T	G	56
ANKRD13B	124930	broad.mit.edu	36	17	24961842	24961842	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24961842	24961842	ANKRD13B	17	C	C	G	32
FARSA	2193	broad.mit.edu	36	19	12900613	12900613	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	12900613	12900613	FARSA	19	G	G	T	46
LRP1B	53353	broad.mit.edu	36	2	140918674	140918674	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140918674	140918674	LRP1B	2	G	G	A	36
RTP3	83597	broad.mit.edu	36	3	46517046	46517046	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	46517046	46517046	RTP3	3	C	C	T	24
MED12L	116931	broad.mit.edu	36	3	152588602	152588602	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	152588602	152588602	MED12L	3	G	G	T	33
C4orf23	152992	broad.mit.edu	36	4	8528564	8528564	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8528564	8528564	C4orf23	4	C	C	T	23
MAP3K1	4214	broad.mit.edu	36	5	56217522	56217522	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56217522	56217522	MAP3K1	5	C	C	T	31
COL11A2	1302	broad.mit.edu	36	6	33249789	33249789	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33249789	33249789	COL11A2	6	G	G	A	42
WNT2	7472	broad.mit.edu	36	7	116742442	116742442	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	116742442	116742442	WNT2	7	G	G	A	38
PIGA	5277	broad.mit.edu	36	X	15259426	15259426	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15259426	15259426	PIGA	23	C	C	T	17
TP53	7157	broad.mit.edu	36	17	7518288	7518296	+	In_Frame_Del	DEL	TGTTACACA	TGTTACACA	-	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	7518288	7518296	TP53	17	TGTTACACA	TGTTACACA	-	55
ZNF717	100131827	broad.mit.edu	36	3	75869508	75869516	+	In_Frame_Del	DEL	ACATTCATT	-	ACATTCATT	novel	Unknown	TCGA-61-2088-01	TCGA-61-2088-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	75869508	75869516	ZNF717	3	ACATTCATT	-	ACATTCATT	6